Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007971

Physical Location & Seq

Genomic Coordinates Reverse (-)

20695093 .. 20695473

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAACTTTCAGCTTCCTCAAGGTCCTCCGCTACGGTAGCAACGACCATGATGTCCTCTCCTGCCTCAAGTTCTTCGATTGGGCCGGCCGCCAGCCCGACTTCCACCACACCCGCGCCACCTTTAACGCCATCTTCAAGATCATTTCCAAGGCCAAACTCATGTCTCTCATGCTCGGCTTCCTCTGCACCTACCGCAATCAAACACTCATGACTCAACAGTGTTGCTCACTATGGCTAGACAGCGTAGCTCGCGTCGAGATCTGGAGGCTGGAAATGGTTGTTGAAACGAAGAAGAACGTCGGACAGTTAATGAACGGACGGAGCTGGGAGAATTCGAGATCGAGGTCGAAAAGAGTCAGGATTTGGAGGCCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

127

Amino Acids

14.95

Weight (kDa)

10.04

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71210
fragaria_vesca	FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690
malus_domestica	MD05G1041400.v1.1 MD10G1047800.v1.1
prunus_persica	Prupe.8G057300_v2.0.a1 Prupe.8G057300_v2.0.a1
pyrus_communis	pycom05g03410 pycom10g03380 pycom17g22250
rosa_chinensis	RchiOBHm_Chr5g0055041
rosa_laevigata	RLG00000034959
rosa_multiflora	Rmu_sc0000925.1_g000011
rosa_roxburghii	Rroxscaffold_1G00025450
rosa_rugosa	Rorug05G0290400
rosa_samantha	Rh5AG360300 Rh5BG371300 Rh5CG393600 Rh5DG385100
rosa_wichuraiana	Rw5G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AccII	CGCG	2 cut(s)	117, 255
AciI	CCGC	4 cut(s)	31, 91, 115, 196
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	139, 287
AluBI	AGCT	3 cut(s)	15, 251, 327
AluI	AGCT	3 cut(s)	15, 251, 327
Alw26I	GTCTC	1 cut(s)	171
AoxI	GGCC	4 cut(s)	84, 88, 153, 371
ApoI	RAATTY	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	25, 84
AvaII	GGWCC	1 cut(s)	25
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	239
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 84
BpmI	CTGGAG	1 cut(s)	286
BpuEI	CTTGAG	2 cut(s)	5, 53
BsaJI	CCNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	172
Bsh1236I	CGCG	2 cut(s)	117, 255
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	4 cut(s)	86, 90, 155, 373
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	4 cut(s)	86, 90, 155, 373
Bsp143I	GATC	3 cut(s)	141, 261, 341
BspACI	CCGC	4 cut(s)	31, 91, 115, 196
BspANI	GGCC	4 cut(s)	86, 90, 155, 373
BspFNI	CGCG	2 cut(s)	117, 255
BspHI	TCATGA	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	141, 261, 341
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	38, 222, 309
BstC8I	GCNNGC	3 cut(s)	88, 95, 253
BstFNI	CGCG	2 cut(s)	117, 255
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	3 cut(s)	144, 264, 344
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	141, 261, 341
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 186, 195, 252
BstUI	CGCG	2 cut(s)	117, 255
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	4 cut(s)	86, 90, 155, 373
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	88, 95, 253
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	25, 84
CseI	GACGC	1 cut(s)	244
CviAII	CATG	4 cut(s)	50, 163, 172, 211
DpnI	GATC	3 cut(s)	143, 263, 343
DpnII	GATC	3 cut(s)	141, 261, 341
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	53, 166, 175, 214
FaiI	YATR	5 cut(s)	51, 164, 173, 212, 235
FatI	CATG	4 cut(s)	49, 162, 171, 210
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	91
FseI	GGCCGGCC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	91
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	4 cut(s)	86, 90, 155, 373
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	53, 166, 175, 214
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	214, 357
HpaII	CCGG	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	6 cut(s)	139, 211, 259, 265, 339, 361
Hpy99I	CGWCG	2 cut(s)	260, 305
HpyCH4III	ACNGT	3 cut(s)	38, 222, 309
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 186, 195, 252
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	53, 166, 175, 214
HspAI	GCGC	1 cut(s)	117
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	141, 261, 341
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	76, 100, 107, 250, 257, 313, 346
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	300
MalI	GATC	3 cut(s)	143, 263, 343
MboI	GATC	3 cut(s)	141, 261, 341
MboII	GAAGA	4 cut(s)	67, 127, 304, 307
MflI	RGATCY	1 cut(s)	261
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	2 cut(s)	208, 366
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	8 cut(s)	29, 38, 68, 77, 194, 261, 339, 363
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	2 cut(s)	126, 311
MspI	CCGG	1 cut(s)	87
MvnI	CGCG	2 cut(s)	117, 255
MwoI	GCNNNNNNNGC	4 cut(s)	39, 186, 195, 252
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	3 cut(s)	141, 261, 341
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	53, 166, 175, 214
NmeAIII	GCCGAG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	2 cut(s)	208, 365
PpsI	GAGTC	2 cut(s)	208, 365
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	25, 84
PspPPI	RGGWCCY	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	261
RigI	GGCCGGCC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	126, 311
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	3 cut(s)	141, 261, 341
Sau96I	GGNCC	2 cut(s)	25, 84
SchI	GAGTC	2 cut(s)	208, 366
SetI	ASST	8 cut(s)	17, 27, 125, 194, 253, 303, 329, 350
SinI	GGWCC	1 cut(s)	25
SmlI	CTYRAG	2 cut(s)	20, 68
SmoI	CTYRAG	2 cut(s)	20, 68
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	4 cut(s)	31, 91, 115, 196
SspMI	CTAG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	38, 222, 309
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	5 cut(s)	78, 258, 338, 344, 350
TasI	AATT	1 cut(s)	334
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	126, 311
Tru9I	TTAA	2 cut(s)	126, 311
TscAI	CASTG	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	2 cut(s)	333, 337
TspRI	CASTG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	334
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.