Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007971

Physical Location & Seq

Genomic Coordinates Forward (+)

59270833 .. 59276973

Gene Structure 6141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG385100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGCTTTTTTCACTGAAAAATCTAGCCAAATCTTCTTCTCATAGGACCAAGTCACTTGGCATCCTCACCGGCATTGATTCAACTTCAATTCCATTCACCACCGCCGCCGCCGCCGCAACAACCACCACTACAACGTGCCTGATCCCGGCCAAGGACATCGTCCTCTCCTTCAAGCAATGGTTCAAGTCCGGCAACCGCCTCCTCCTCCACCAAATCTTCCAAATCCTCAAAGCCACCTCCGACAGCGACCACTTCAACCACCAGCAGCAGCACTCCTCCTCCGACCTCGCCCTCTCGCATCTCGACCTCCACCTCTCCGAGGCTTTGGTGCTCGAGGTCCTCCGCTACGGCCACGAGCACGAGCACGACGTCCTCTCCTGCCTCAAGTTCTTCGACTGGGTCGGCCGCCAGAACAGCTTCTACCACACGCGCGCCACCTTCAACGCCATTTTCAAGATCCTCTCGCGCGCCAAGCTCATGTCCCTCATGCTCGACTTCCTCGCCGACTTCCGCAGGCACAAGTTCGACCACGGCGTTCGGTTTCATGACACATTGGTCATGGGCTACGCCGTCTCCGGCAAGCCTGAAGTTGCGTTGCAGCTGTTCGGCAGAATGCGCTTTAAGGGGCTCGACTTGGATGCTTTTGGCTACCATGTGCTTTTGAATGCTCTGGTGGAGGAGAAGTGTTTCGACGCCGTTGAGGTCGTGGCTAATCAGATTTCCATGAGGGGTTTCGAGAATGAAATCACGCATTCCGTCATGCTCAAGAGGTTCTGCAAGCAGAACTTGCTGGATGAGGCGGAGGGGTATTTGAGAAGAGTAGTGACTGAGGGCAAGGCCAATGGCTCTGCGGTGGGGGTTCTTGTTCGTGCATTGTGTCAGCATAAGATGTTCGAGCGTGCGACTAAGTTGATGGATGAGTTTCGGGACTTGGGGGTGGTTTCTATGGAGAGTGCTTATGCTGTGTGGATTGGAGACCTTGCGCAGGCTGGGAGGTTAGATCAAGCATTGGAGTTTTTACAGAGCAAGAAGTCATTGGAAGGGTATGTTCCCGACGTGTTTAGGTACAACATTTTGATTGGCAAACTTTTGAGGGAGGTTAGACTCGAGGAGGTTTGTGATCTCATGTTGGAGATGAAGGAGCGTGAGATATCACCCGATACGGTCACTATGAATGCTGCATTGTGCTTCTTTTGTAAAGTGGGAATGCTGGATATCGCGATTGAGTTGTATAATTCAAGGTCTGAGTTTGGGCTCACCCCCAATAGCATGGCTTACAACTATTTGATCAATACTTTCTGCGGGGATGGCAGCGTGGACGAAGCATATGGAGTGTTGAAATCCTCTCTTGACCAAGGTTACTTTCCAGGTAGGAAAACATTTTCTATATTGGCAGATGCTTTGTGCAGAGACGGAAAGCTTGATAAGATGAAGGAGTTCGTTATTTTTGCTTTAGAGCGGAATCTTATGCCGAGTGGTTCCACCTATGACAAGTTCATTACAACTCTTTGCAAAACTAGGAGGGTAGAAGACGGTTATTTGATACATGAGGAACTTAACAGAATAAGTGAAGTTCGTAGAGAGAGTACATACATCAACTTGATTGAAGGTTTTTGCAAGTTAAATAAGGGTGATATTGCCGCTAGACTTCTGATTGAAATGCAAGTACATGGTCACTCACCAACTCATAAGCTGTTCCGAGATGTAATTTGCTCTTTATGTGATACGGGAAATCCGGTAAATACAGACCAGCAATTTTTCGCCTTATTGGAGATGCAGTTGTCTTGCCGGGAACCTACTTGTCGTATATACAACTTCTTCATCTATGGAGCTGGGCATGCCAAAAGGCCCGATTTGGCTAGTAAAGTATTAGAGATGATGCAGCGTAGTGGGATTGAACCTAATTTGAGTTCTGACGTTCTTATGTTGCAGAGTTATTTGAAGAGTGAACGATATTCGGATGCTTTGAACTACTTCAATGATCTGCGTCACAGAAGAAAGATTAGGAGAAGACTTTACAGTGCCATGATTACTGGTATGTGCAAGGCTAAAAAAGCAGATATTGCACTTAACTTACTTAGGGAAATGAGAGAAGACGGAGTGGTTCCGAGCGATGACTGCTATGAGTTTCTTATACAATTGCTCTGCTGGAATAAAGAATACGATTTAGCAGTAATCCTCATTAAGGACTTAGAGAAAGTCGGCCGCCACATTACATCCTTTATTGGCAACATACTTCTGTTGCATTCTTTGAAAAGTCAAGAGCTGTACCAGGCTTGGGTTCGTCTAAGAGAGGTGCAAATCGAGATCTCTGATAATTCAATCCTTGGTCTGCTTATTGGTGCATTTTCTGGTCGTATTTGGGTGAGCCAACAGATTGAGAACTTGGAAGAAGTAATTGCTAGCTGCTTTCCGCTAGACGCGTACACATACAATTTATTACTTAGATGTTTCAGTAATAGCAACATGGACCATGCTTGTGCATTGTTCTATAGGATGTCACAGAAAGGGTATGAGCCCAATCGATGGACTTATGAAATCTTAGTACAAGGTTTTCTTAAGCATGGGAGGACAGACGAGGCAAACAGATGGCTAAAAGCTATGTACGTGAAAGGTTTTAGTCCAAACAAGCAAACGATGCGATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

883

Amino Acids

101.11

Weight (kDa)

7.54

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	351 - 393	3.3e-08	PPR repeat family
PPR_2	PF13041	386 - 434	2.2e-10	PPR repeat family
PPR_1	PF12854	418 - 447	5.6e-06	PPR repeat
PPR_2	PF13041	421 - 470	9.2e-08	PPR repeat family
PPR_2	PF13041	673 - 716	4.8e-08	PPR repeat family
PPR_2	PF13041	807 - 854	1.7e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71210
fragaria_vesca	FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690
malus_domestica	MD05G1041400.v1.1 MD10G1047800.v1.1
prunus_persica	Prupe.8G057300_v2.0.a1 Prupe.8G057300_v2.0.a1
pyrus_communis	pycom05g03410 pycom10g03380 pycom17g22250
rosa_chinensis	RchiOBHm_Chr5g0055041
rosa_laevigata	RLG00000034959
rosa_multiflora	Rmu_sc0000925.1_g000011
rosa_roxburghii	Rroxscaffold_1G00025450
rosa_rugosa	Rorug05G0290400
rosa_samantha	Rh5AG360300 Rh5BG371300 Rh5CG393600 Rh5DG385100
rosa_wichuraiana	Rw5G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AatII	GACGTC	1 cut(s)	372
Acc16I	TGCGCA	1 cut(s)	984
AccB7I	CCANNNNNTGG	1 cut(s)	2526
AccBSI	CCGCTC	1 cut(s)	1459
AccII	CGCG	6 cut(s)	430, 432, 466, 468, 1220, 2423
AclWI	GGATC	2 cut(s)	136, 451
AcoI	YGGCCR	4 cut(s)	147, 349, 403, 2203
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	2 cut(s)	369, 693
AfaI	GTAC	7 cut(s)	1067, 1588, 1668, 2270, 2426, 2547, 2606
AfiI	CCNNNNNNNGG	7 cut(s)	145, 151, 319, 985, 2185, 2278, 2526
AflII	CTTAAG	1 cut(s)	2558
AflIII	ACRYGT	2 cut(s)	1056, 2421
AjiI	CACGTC	1 cut(s)	1057
AjnI	CCWGG	2 cut(s)	1366, 2271
AjuI	GAANNNNNNNTTGG	2 cut(s)	1347, 1379
AluBI	AGCT	9 cut(s)	417, 475, 601, 1420, 1693, 1832, 2266, 2406, 2600
AluI	AGCT	9 cut(s)	417, 475, 601, 1420, 1693, 1832, 2266, 2406, 2600
Alw21I	GWGCWC	3 cut(s)	333, 360, 366
Alw26I	GTCTC	3 cut(s)	577, 969, 1404
AlwI	GGATC	2 cut(s)	136, 451
Ama87I	CYCGRG	2 cut(s)	332, 1106
AoxI	GGCC	6 cut(s)	147, 349, 403, 837, 1847, 2203
ApeKI	GCWGC	7 cut(s)	265, 268, 598, 1178, 1311, 1882, 2406
Asp700I	GAANNNNTTC	4 cut(s)	416, 686, 1436, 1973
AspLEI	GCGC	6 cut(s)	432, 434, 468, 470, 618, 985
AspS9I	GGNCC	4 cut(s)	45, 337, 1848, 2470
AsuC2I	CCSGG	2 cut(s)	146, 1790
AsuHPI	GGTGA	7 cut(s)	58, 88, 1146, 1249, 1643, 1671, 2377
AsuNHI	GCTAGC	1 cut(s)	2402
AvaI	CYCGRG	2 cut(s)	332, 1106
AvaII	GGWCC	3 cut(s)	45, 337, 2470
BanII	GRGCYC	3 cut(s)	630, 1257, 2520
BauI	CACGAG	2 cut(s)	353, 359
BbsI	GAAGAC	3 cut(s)	1536, 2017, 2100
Bbv12I	GWGCWC	3 cut(s)	333, 360, 366
BbvI	GCAGC	7 cut(s)	277, 280, 610, 1165, 1323, 1894, 2393
BccI	CCATC	4 cut(s)	907, 1301, 2520, 2583
BceAI	ACGGC	4 cut(s)	364, 547, 554, 680
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	2 cut(s)	1368, 2273
BclI	TGATCA	1 cut(s)	1287
BcnI	CCSGG	2 cut(s)	146, 1790
BcoDI	GTCTC	3 cut(s)	577, 969, 1404
BfaI	CTAG	6 cut(s)	23, 1518, 1644, 1860, 2403, 2417
BfmI	CTRYAG	1 cut(s)	2491
BfrI	CTTAAG	1 cut(s)	2558
BglII	AGATCT	1 cut(s)	2307
Bme1390I	CCNGG	4 cut(s)	146, 1368, 1790, 2273
Bme18I	GGWCC	3 cut(s)	45, 337, 2470
BmeT110I	CYCGRG	2 cut(s)	332, 1106
BmgBI	CACGTC	1 cut(s)	1057
BmgT120I	GGNCC	4 cut(s)	45, 337, 1848, 2470
BmiI	GGNNCC	3 cut(s)	1480, 1794, 2106
BmrFI	CCNGG	4 cut(s)	146, 1368, 1790, 2273
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	8 cut(s)	69, 307, 628, 1387, 1764, 1869, 1951, 2628
BmtI	GCTAGC	1 cut(s)	2406
BmuI	ACTGGG	1 cut(s)	406
BpiI	GAAGAC	3 cut(s)	1536, 2017, 2100
BpuEI	CTTGAG	2 cut(s)	368, 749
BpuMI	CCSGG	2 cut(s)	146, 1790
Bsa29I	ATCGAT	1 cut(s)	2524
BsaAI	YACGTR	1 cut(s)	2608
BsaHI	GRCGYC	2 cut(s)	369, 693
BsaI	GGTCTC	1 cut(s)	969
BsaJI	CCNNGG	5 cut(s)	150, 318, 529, 1354, 2326
BsaWI	WCCGGW	1 cut(s)	1735
Bsc4I	CCNNNNNNNGG	7 cut(s)	145, 151, 319, 985, 2185, 2278, 2526
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	401, 2038
Bse3DI	GCAATG	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	1368, 2273
BseCI	ATCGAT	1 cut(s)	2524
BseDI	CCNNGG	5 cut(s)	150, 318, 529, 1354, 2326
BseGI	GGATG	8 cut(s)	60, 643, 799, 922, 1312, 1966, 2216, 2502
BseLI	CCNNNNNNNGG	7 cut(s)	145, 151, 319, 985, 2185, 2278, 2526
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	819, 1236
BseNI	ACTGG	2 cut(s)	401, 2038
BsePI	GCGCGC	2 cut(s)	430, 466
BseRI	GAGGAG	6 cut(s)	191, 194, 265, 268, 692, 1124
BseX3I	CGGCCG	2 cut(s)	403, 2203
BseXI	GCAGC	7 cut(s)	277, 280, 610, 1165, 1323, 1894, 2393
BseYI	CCCAGC	2 cut(s)	989, 1832
BsgI	GTGCAG	1 cut(s)	1426
Bsh1236I	CGCG	6 cut(s)	430, 432, 466, 468, 1220, 2423
Bsh1285I	CGRYCG	2 cut(s)	406, 2206
BshFI	GGCC	6 cut(s)	149, 351, 405, 839, 1849, 2205
BshVI	ATCGAT	1 cut(s)	2524
BsiEI	CGRYCG	2 cut(s)	406, 2206
BsiHKAI	GWGCWC	3 cut(s)	333, 360, 366
BsiHKCI	CYCGRG	2 cut(s)	332, 1106
BsiSI	CCGG	6 cut(s)	69, 146, 189, 576, 1736, 1789
BslFI	GGGAC	2 cut(s)	466, 941
BslI	CCNNNNNNNGG	7 cut(s)	145, 151, 319, 985, 2185, 2278, 2526
BsmAI	GTCTC	3 cut(s)	577, 969, 1404
BsmBI	CGTCTC	2 cut(s)	577, 1404
BsmFI	GGGAC	2 cut(s)	466, 941
BsmI	GAATGC	6 cut(s)	618, 670, 751, 1180, 1212, 2245
BsnI	GGCC	6 cut(s)	149, 351, 405, 839, 1849, 2205
Bso31I	GGTCTC	1 cut(s)	969
BsoBI	CYCGRG	2 cut(s)	332, 1106
Bsp1286I	GDGCHC	6 cut(s)	333, 360, 366, 630, 1257, 2520
Bsp143I	GATC	7 cut(s)	141, 456, 1000, 1120, 1287, 1981, 2307
Bsp68I	TCGCGA	1 cut(s)	1220
BspANI	GGCC	6 cut(s)	149, 351, 405, 839, 1849, 2205
BspCNI	CTCAG	2 cut(s)	820, 1237
BspDI	ATCGAT	1 cut(s)	2524
BspFNI	CGCG	6 cut(s)	430, 432, 466, 468, 1220, 2423
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	3 cut(s)	1480, 1794, 2106
BspOI	GCTAGC	1 cut(s)	2406
BspPI	GGATC	2 cut(s)	136, 451
BspTI	CTTAAG	1 cut(s)	2558
BspTNI	GGTCTC	1 cut(s)	969
BsrBI	CCGCTC	1 cut(s)	1459
BsrDI	GCAATG	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	401, 2038
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	5 cut(s)	150, 318, 529, 1354, 2326
BssHII	GCGCGC	2 cut(s)	430, 466
BssMI	GATC	7 cut(s)	141, 456, 1000, 1120, 1287, 1981, 2307
BssNI	GRCGYC	2 cut(s)	369, 693
BssSI	CACGAG	2 cut(s)	353, 359
BssT1I	CCWWGG	3 cut(s)	150, 1354, 2326
Bst2BI	CACGAG	2 cut(s)	353, 359
Bst2UI	CCWGG	2 cut(s)	1368, 2273
Bst4CI	ACNGT	3 cut(s)	1165, 1535, 2021
Bst6I	CTCTTC	2 cut(s)	811, 1937
BstACI	GRCGYC	2 cut(s)	369, 693
BstAFI	CTTAAG	1 cut(s)	2558
BstAPI	GCANNNNNTGC	3 cut(s)	787, 2063, 2638
BstBAI	YACGTR	1 cut(s)	2608
BstC8I	GCNNGC	9 cut(s)	432, 468, 515, 581, 779, 900, 987, 1839, 2404
BstDEI	CTNAG	8 cut(s)	828, 906, 1245, 2078, 2191, 2288, 2444, 2542
BstDSI	CCRYGG	1 cut(s)	529
BstENI	CCTNNNNNAGG	3 cut(s)	317, 983, 2183
BstF5I	GGATG	8 cut(s)	60, 643, 799, 922, 1312, 1966, 2216, 2502
BstFNI	CGCG	6 cut(s)	430, 432, 466, 468, 1220, 2423
BstHHI	GCGC	6 cut(s)	432, 434, 468, 470, 618, 985
BstKTI	GATC	7 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310
BstMAI	GTCTC	3 cut(s)	577, 969, 1404
BstMBI	GATC	7 cut(s)	141, 456, 1000, 1120, 1287, 1981, 2307
BstMCI	CGRYCG	2 cut(s)	406, 2206
BstNI	CCWGG	2 cut(s)	1368, 2273
BstNSI	RCATGY	1 cut(s)	1841
BstSCI	CCNGG	4 cut(s)	144, 1366, 1788, 2271
BstSFI	CTRYAG	1 cut(s)	2491
BstUI	CGCG	6 cut(s)	430, 432, 466, 468, 1220, 2423
BstV1I	GCAGC	7 cut(s)	277, 280, 610, 1165, 1323, 1894, 2393
BstV2I	GAAGAC	3 cut(s)	1536, 2017, 2100
BstX2I	RGATCY	2 cut(s)	456, 2307
BstXI	CCANNNNNNTGG	1 cut(s)	1270
BstYI	RGATCY	2 cut(s)	456, 2307
BstZI	CGGCCG	2 cut(s)	403, 2203
Bsu15I	ATCGAT	1 cut(s)	2524
BsuRI	GGCC	6 cut(s)	149, 351, 405, 839, 1849, 2205
BsuTUI	ATCGAT	1 cut(s)	2524
BtgI	CCRYGG	1 cut(s)	529
BtgZI	GCGATG	1 cut(s)	2127
BtrI	CACGTC	1 cut(s)	1057
BtsCI	GGATG	8 cut(s)	60, 643, 799, 922, 1312, 1966, 2216, 2502
BtsIMutI	CAGTG	2 cut(s)	11, 2026
BtuMI	TCGCGA	1 cut(s)	1220
Cac8I	GCNNGC	9 cut(s)	432, 468, 515, 581, 779, 900, 987, 1839, 2404
CciI	TCATGA	1 cut(s)	544
CfoI	GCGC	6 cut(s)	432, 434, 468, 470, 618, 985
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	45, 337, 1848, 2470
ClaI	ATCGAT	1 cut(s)	2524
CseI	GACGC	3 cut(s)	701, 1976, 2429
Csp6I	GTAC	7 cut(s)	1066, 1587, 1667, 2269, 2425, 2546, 2605
CviQI	GTAC	7 cut(s)	1066, 1587, 1667, 2269, 2425, 2546, 2605
DdeI	CTNAG	8 cut(s)	828, 906, 1245, 2078, 2191, 2288, 2444, 2542
DpnI	GATC	7 cut(s)	143, 458, 1002, 1122, 1289, 1983, 2309
DpnII	GATC	7 cut(s)	141, 456, 1000, 1120, 1287, 1981, 2307
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	4 cut(s)	147, 349, 403, 2203
EagI	CGGCCG	2 cut(s)	403, 2203
Eam1104I	CTCTTC	2 cut(s)	811, 1937
EarI	CTCTTC	2 cut(s)	811, 1937
EciI	GGCGGA	1 cut(s)	815
EclXI	CGGCCG	2 cut(s)	403, 2203
Eco130I	CCWWGG	3 cut(s)	150, 1354, 2326
Eco24I	GRGCYC	3 cut(s)	630, 1257, 2520
Eco31I	GGTCTC	1 cut(s)	969
Eco32I	GATATC	2 cut(s)	1152, 1216
Eco47I	GGWCC	3 cut(s)	45, 337, 2470
Eco52I	CGGCCG	2 cut(s)	403, 2203
Eco57I	CTGAAG	1 cut(s)	606
Eco88I	CYCGRG	2 cut(s)	332, 1106
EcoNI	CCTNNNNNAGG	3 cut(s)	317, 983, 2183
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	1366, 2271
EcoRV	GATATC	2 cut(s)	1152, 1216
EcoT14I	CCWWGG	3 cut(s)	150, 1354, 2326
EcoT38I	GRGCYC	3 cut(s)	630, 1257, 2520
ErhI	CCWWGG	3 cut(s)	150, 1354, 2326
Esp3I	CGTCTC	2 cut(s)	577, 1404
FalI	AAGNNNNNCTT	4 cut(s)	770, 802, 2541, 2573
FaqI	GGGAC	2 cut(s)	466, 941
FauI	CCCGC	1 cut(s)	1295
FauNDI	CATATG	1 cut(s)	1327
FbaI	TGATCA	1 cut(s)	1287
FokI	GGATG	8 cut(s)	47, 650, 806, 929, 1319, 1973, 2203, 2509
FriOI	GRGCYC	3 cut(s)	630, 1257, 2520
FspBI	CTAG	6 cut(s)	23, 1518, 1644, 1860, 2403, 2417
FspI	TGCGCA	1 cut(s)	984
GlaI	GCGC	6 cut(s)	431, 433, 467, 469, 617, 984
GsaI	CCCAGC	2 cut(s)	993, 1836
HaeIII	GGCC	6 cut(s)	149, 351, 405, 839, 1849, 2205
HapII	CCGG	6 cut(s)	69, 146, 189, 576, 1736, 1789
HgaI	GACGC	3 cut(s)	701, 1976, 2429
HhaI	GCGC	6 cut(s)	432, 434, 468, 470, 618, 985
Hin1I	GRCGYC	2 cut(s)	369, 693
Hin6I	GCGC	6 cut(s)	430, 432, 466, 468, 616, 983
HinP1I	GCGC	6 cut(s)	430, 432, 466, 468, 616, 983
HindIII	AAGCTT	1 cut(s)	1418
HinfI	GANTC	3 cut(s)	77, 1104, 1462
HpaII	CCGG	6 cut(s)	69, 146, 189, 576, 1736, 1789
HphI	GGTGA	7 cut(s)	58, 88, 1146, 1249, 1643, 1671, 2377
Hpy166II	GTNNAC	3 cut(s)	1318, 1949, 2427
Hpy8I	GTNNAC	3 cut(s)	1318, 1949, 2427
Hpy99I	CGWCG	3 cut(s)	371, 695, 1058
HpyAV	CCTTC	6 cut(s)	178, 448, 1034, 1132, 1426, 1601
HpyCH4III	ACNGT	3 cut(s)	1165, 1535, 2021
HpyCH4IV	ACGT	5 cut(s)	134, 369, 1056, 1917, 2607
HpyF3I	CTNAG	8 cut(s)	828, 906, 1245, 2078, 2191, 2288, 2444, 2542
HpySE526I	ACGT	5 cut(s)	134, 369, 1056, 1917, 2607
Hsp92I	GRCGYC	2 cut(s)	369, 693
HspAI	GCGC	6 cut(s)	430, 432, 466, 468, 616, 983
Ksp22I	TGATCA	1 cut(s)	1287
Kzo9I	GATC	7 cut(s)	141, 456, 1000, 1120, 1287, 1981, 2307
LmnI	GCTCC	2 cut(s)	1141, 1829
Lsp1109I	GCAGC	7 cut(s)	277, 280, 610, 1165, 1323, 1894, 2393
LweI	GCATC	8 cut(s)	69, 307, 628, 1387, 1764, 1869, 1951, 2628
MaeI	CTAG	6 cut(s)	23, 1518, 1644, 1860, 2403, 2417
MaeII	ACGT	5 cut(s)	134, 369, 1056, 1917, 2607
MaeIII	GTNAC	7 cut(s)	51, 823, 1165, 1358, 1673, 1988, 2499
MalI	GATC	7 cut(s)	143, 458, 1002, 1122, 1289, 1983, 2309
MbiI	CCGCTC	1 cut(s)	1459
MboI	GATC	7 cut(s)	141, 456, 1000, 1120, 1287, 1981, 2307
MfeI	CAATTG	1 cut(s)	2138
MflI	RGATCY	2 cut(s)	456, 2307
MhlI	GDGCHC	6 cut(s)	333, 360, 366, 630, 1257, 2520
MluCI	AATT	9 cut(s)	87, 1234, 1707, 1754, 1903, 2138, 2317, 2397, 2434
MluI	ACGCGT	1 cut(s)	2421
MlyI	GAGTC	1 cut(s)	1098
MmeI	TCCRAC	3 cut(s)	264, 306, 1110
MroXI	GAANNNNTTC	4 cut(s)	416, 686, 1436, 1973
MseI	TTAA	7 cut(s)	621, 1557, 1622, 2070, 2184, 2559, 2650
MslI	CAYNNNNRTG	1 cut(s)	2478
MspA1I	CMGCKG	1 cut(s)	601
MspCI	CTTAAG	1 cut(s)	2558
MspI	CCGG	6 cut(s)	69, 146, 189, 576, 1736, 1789
MspR9I	CCNGG	4 cut(s)	146, 1368, 1790, 2273
MunI	CAATTG	1 cut(s)	2138
Mva1269I	GAATGC	6 cut(s)	618, 670, 751, 1180, 1212, 2245
MvaI	CCWGG	2 cut(s)	1368, 2273
MvnI	CGCG	6 cut(s)	430, 432, 466, 468, 1220, 2423
NciI	CCSGG	2 cut(s)	146, 1790
NdeI	CATATG	1 cut(s)	1327
NdeII	GATC	7 cut(s)	141, 456, 1000, 1120, 1287, 1981, 2307
NheI	GCTAGC	1 cut(s)	2402
NlaIV	GGNNCC	3 cut(s)	1480, 1794, 2106
NmeAIII	GCCGAG	1 cut(s)	1497
NmuCI	GTSAC	6 cut(s)	51, 823, 1165, 1673, 1988, 2499
NruI	TCGCGA	1 cut(s)	1220
NsbI	TGCGCA	1 cut(s)	984
NspI	RCATGY	1 cut(s)	1841
PaeI	GCATGC	1 cut(s)	1841
PaeR7I	CTCGAG	2 cut(s)	332, 1106
PagI	TCATGA	1 cut(s)	544
PauI	GCGCGC	2 cut(s)	430, 466
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 531
PctI	GAATGC	6 cut(s)	618, 670, 751, 1180, 1212, 2245
PdmI	GAANNNNTTC	4 cut(s)	416, 686, 1436, 1973
PfeI	GAWTC	2 cut(s)	77, 1462
PflFI	GACNNNGTC	3 cut(s)	49, 158, 398
PflMI	CCANNNNNTGG	1 cut(s)	2526
PleI	GAGTC	1 cut(s)	1098
PpsI	GAGTC	1 cut(s)	1098
Ppu21I	YACGTR	1 cut(s)	2608
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	2 cut(s)	1366, 2271
PspFI	CCCAGC	2 cut(s)	989, 1832
PspGI	CCWGG	2 cut(s)	1366, 2271
PspN4I	GGNNCC	3 cut(s)	1480, 1794, 2106
PspPI	GGNCC	4 cut(s)	45, 337, 1848, 2470
PspPPI	RGGWCCY	1 cut(s)	337
PspXI	VCTCGAGB	2 cut(s)	332, 1106
PsrI	GAACNNNNNNTAC	2 cut(s)	404, 436
PsuI	RGATCY	2 cut(s)	456, 2307
PsyI	GACNNNGTC	3 cut(s)	49, 158, 398
PteI	GCGCGC	2 cut(s)	430, 466
PvuII	CAGCTG	1 cut(s)	601
RruI	TCGCGA	1 cut(s)	1220
RsaI	GTAC	7 cut(s)	1067, 1588, 1668, 2270, 2426, 2547, 2606
RsaNI	GTAC	7 cut(s)	1066, 1587, 1667, 2269, 2425, 2546, 2605
RseI	CAYNNNNRTG	1 cut(s)	2478
SaqAI	TTAA	7 cut(s)	621, 1557, 1622, 2070, 2184, 2559, 2650
Sau3AI	GATC	7 cut(s)	141, 456, 1000, 1120, 1287, 1981, 2307
Sau96I	GGNCC	4 cut(s)	45, 337, 1848, 2470
SchI	GAGTC	1 cut(s)	1098
ScrFI	CCNGG	4 cut(s)	146, 1368, 1790, 2273
SduI	GDGCHC	6 cut(s)	333, 360, 366, 630, 1257, 2520
SfaNI	GCATC	8 cut(s)	69, 307, 628, 1387, 1764, 1869, 1951, 2628
SfcI	CTRYAG	1 cut(s)	2491
Sfr274I	CTCGAG	2 cut(s)	332, 1106
SinI	GGWCC	3 cut(s)	45, 337, 2470
SlaI	CTCGAG	2 cut(s)	332, 1106
SmiMI	CAYNNNNRTG	1 cut(s)	2478
SmlI	CTYRAG	5 cut(s)	332, 383, 764, 1106, 2558
SmoI	CTYRAG	5 cut(s)	332, 383, 764, 1106, 2558
SphI	GCATGC	1 cut(s)	1841
Sse9I	AATT	9 cut(s)	87, 1234, 1707, 1754, 1903, 2138, 2317, 2397, 2434
SspMI	CTAG	6 cut(s)	23, 1518, 1644, 1860, 2403, 2417
StyD4I	CCNGG	4 cut(s)	144, 1366, 1788, 2271
StyI	CCWWGG	3 cut(s)	150, 1354, 2326
TaaI	ACNGT	3 cut(s)	1165, 1535, 2021
TaiI	ACGT	5 cut(s)	137, 372, 1059, 1920, 2610
TasI	AATT	9 cut(s)	87, 1234, 1707, 1754, 1903, 2138, 2317, 2397, 2434
TatI	WGTACW	3 cut(s)	1586, 1666, 2545
TauI	GCSGC	7 cut(s)	107, 110, 113, 116, 408, 1643, 2208
TfiI	GAWTC	2 cut(s)	77, 1462
Tru1I	TTAA	7 cut(s)	621, 1557, 1622, 2070, 2184, 2559, 2650
Tru9I	TTAA	7 cut(s)	621, 1557, 1622, 2070, 2184, 2559, 2650
TscAI	CASTG	2 cut(s)	18, 2026
TseFI	GTSAC	6 cut(s)	51, 823, 1165, 1673, 1988, 2499
TseI	GCWGC	7 cut(s)	265, 268, 598, 1178, 1311, 1882, 2406
Tsp45I	GTSAC	6 cut(s)	51, 823, 1165, 1673, 1988, 2499
TspDTI	ATGAA	8 cut(s)	533, 756, 1151, 1187, 1445, 1486, 1810, 2550
TspGWI	ACGGA	3 cut(s)	745, 1428, 2112
TspRI	CASTG	2 cut(s)	18, 2026
Tth111I	GACNNNGTC	3 cut(s)	49, 158, 398
Van91I	CCANNNNNTGG	1 cut(s)	2526
Vha464I	CTTAAG	1 cut(s)	2558
VpaK11BI	GGWCC	3 cut(s)	45, 337, 2470
XagI	CCTNNNNNAGG	3 cut(s)	317, 983, 2183
XceI	RCATGY	1 cut(s)	1841
XhoI	CTCGAG	2 cut(s)	332, 1106
XmnI	GAANNNNTTC	4 cut(s)	416, 686, 1436, 1973
XspI	CTAG	6 cut(s)	23, 1518, 1644, 1860, 2403, 2417
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.