Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007971

Physical Location & Seq

Genomic Coordinates Forward (+)

51844670 .. 51850040

Gene Structure 5371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG393600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGCTTTTTTCACTGAAAAATCTAGCCAAATCTTCTTCTCATAGGACCAAGTCACTTGGCATCCTCACCGGCATTGATTCAACTTCAATTCCATTCACCACCACCGCCGCCGCCGCAACAACCACCACTACAACGTGCCTGATCCCGGCCAAGGACATCGTCCTCTCCTTCAAGCAATGGTTCAAGTCCGGCAACCGCCTCCTCCTCCACCAAATCTTCCAAATCCTCAAAGCCACCTCCGACAGCGACCGCTTCAACCACCACCACCAGCACTCCTCCGCCGACCTCGCCCTCTCGCATCTCGACCTCCACCTCTCCGAGGCTTTAGTGCTCGAGGTGCTCCGCTACGGCCACGAGCACGAGCACGACGTCCTCTCCTGCCTCAAGTTCTTCGACTGGGTCGGCCGCCAGAACCGCTTCTACCACACGCGCGCCACCTTCAACGCCATTTTCAAGATCCTCTCACGCGCCAAGCTCATGTCCCTCATGCTCGATTTCCTCGCCAACTTCCGCAGGCACAAGTTCGACGACCACGGCGTTCGGTTTCATGATACATTGGTCATGGGCTACGCCGTCTCCGGCAAGCCTGAAGTTGCGTTGCAGCTGTTCGGCAGAATGCGCTTTCAGGGACTCGACTTGGATGCTTTTGGCTACCATGTGCTTTTGAATGCTCTGGTGGAGGAGAAGTGTTTCGACGCCGTCGAGGTCGTAGCTAATCAGATTTCCATGAGGGGTTTCGAGAATGAAATCACGCATTCCGTCATGCTCAAGCGGTTCTGCAAGCAGAACTTGCTGGATGAGGCGGAGGGGTATTTGAGAAGATTAGTGACTGAGGGCAAGGCCAATGGCTCTGCGGTGGGGGTTCTTGTTCGTGCATTGTGTCAGCATAAGATGTTCGAGCGTGCTACTAAGTTGATGGATGAGTTTCGGGACTTGGGGGCGGTTTCTATGGAGAGTGCTTATGCTGTGTGGATTGGAGACCTTGCGCAGGCTGGGAGGTTAGATCAAGCATTGGAGTTTTTACAGAGCAAGAAGTCATTGGAAGGGTATGTTCCCGATGTCTTTAGGTACAACATTTTGATTGGTAAACTTTTGAGGGAGGTTAGACTCGAGGAGGTTTGTGATCTCATGTTGGAGATGAAGGAGCGTGAGATATCACCCGATACGGTCACTATGAATGCTGCATTGTGCTTCTTTTGTAAAGTGGGAATGCTGGATATCGCGATTGAGTTGTATAATTCAAGGTCTGAGTTTGGGCTCACCCCCAATAGCATGGCTTACAACTACTTGATCAATACTTTCTGCGGGGATGGCAGCGTTGACGAAGCATATGGAGTGTTGAAATCCTCTCTTGACCAAGGTTACTTTCCAGGTAGGAAAACATTTTCCATATTGGCAGATGCTTTGTGCAGAGACGGAAAGCTTGATAAGATGAAGGAGTTGGTTGTTTTTGCTTTAGAGCGGAATCTTATGCCGAGTGGTTCCACCTATGACAAGTTCATTACAACTCTTTGCAAAACTAGGAGGGTAGAAGACGGTTATTTGATACATGAGGAACTTAACAGAATAAGTGAAGTTCGTAGAGAGAGTACATACATCAACTTGATTGAAGGTTTTTGCAAGTTAAATAAGGGTGATATTGCCGCTAGACTTCTGATTGAAATGCAAGTACATGGTCACTCACCAACTCATAAGCTGTTCCGACATGTAATTTGCTCTTTATGTGATACGGGAAATCCGGTAAATACAGACCAGCAATTTTTCACCTTATTGGAGATGCAGTTGTCTTGCCGGGAACCTACTTGTCGTATATACAACTTCTTCATCTATGGAGCTGGGCATGCCAAAAGGCCTGATTTGGCTAGTAAAGTATTAGAGATGATGCAGCGTAGTGGGATTGAACCTAATTTGAGTTCTGATGTTCTTATGTTGCAGAGTTATTTGAAGAGTGAACGATATTCGGATGCTTTGAACTACTTCAATGATCTGCGTCACAGAAGAAAGATCAGGAGAAGACTTTACAGTGCCATGATTACTGGTATGTGCAAGGCCAAAAAAGCAGTTATTGCACTTAACTTACTTAGGGAAATGAGAGAGGACGGAGTGGTTCCGAGCGATGACTGCTATGAGTTTCTTATACAATTGCTCTGCTGGAATAAAGAATACGATATAGCAGTAATCCTCATTAAGGACTTAGAGAAAGTCGGCCGCCACATTACATCCTTTATTGGCAACATACTTCTGTTGCATTCTTTGAAAAGTCAAGAGCTATACCAGGCTTGGGTTCGTCTAAGAGAGGTGCAAATCGAGATCTCTGATAATTCAATCCTTGGTCTGCTTATTGGTGCATTTTCTGGTCGTATTTGGGTGAGCCAACAGATTGAGAACTTGGAAGAAGTAATTGCTAGCTGCTTTCCGCTAGACTTGTACACATACAATTTATTACTTAGATGTTTCAGTAATAGCAACATGGACCATGCTTGTGCATTGTTCTATAGGATGTCACAGAAAGGGTATGAGCCCAATCGATGGACTTATGAAATCTTAGTACAAGGTTTTCTTAAGCATGGGAGGACAGACGAGGCAAACAGATGGCTAAAAGCTATGTACGTGAAAGGTTTTAGTCCAAACAAGCAAACGATGCGATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

884

Amino Acids

101.36

Weight (kDa)

8.08

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	352 - 393	5.2e-08	PPR repeat family
PPR_2	PF13041	387 - 435	2.1e-10	PPR repeat family
PPR_1	PF12854	419 - 448	5.6e-06	PPR repeat
PPR_2	PF13041	422 - 471	9.2e-08	PPR repeat family
PPR_2	PF13041	674 - 717	4.2e-07	PPR repeat family
PPR_2	PF13041	808 - 855	2.6e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71210
fragaria_vesca	FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690
malus_domestica	MD05G1041400.v1.1 MD10G1047800.v1.1
prunus_persica	Prupe.8G057300_v2.0.a1 Prupe.8G057300_v2.0.a1
pyrus_communis	pycom05g03410 pycom10g03380 pycom17g22250
rosa_chinensis	RchiOBHm_Chr5g0055041
rosa_laevigata	RLG00000034959
rosa_multiflora	Rmu_sc0000925.1_g000011
rosa_roxburghii	Rroxscaffold_1G00025450
rosa_rugosa	Rorug05G0290400
rosa_samantha	Rh5AG360300 Rh5BG371300 Rh5CG393600 Rh5DG385100
rosa_wichuraiana	Rw5G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
Acc16I	TGCGCA	1 cut(s)	987
AccB7I	CCANNNNNTGG	1 cut(s)	2529
AccBSI	CCGCTC	1 cut(s)	1462
AccII	CGCG	4 cut(s)	430, 432, 468, 1223
AclWI	GGATC	2 cut(s)	136, 451
AcoI	YGGCCR	4 cut(s)	147, 349, 403, 2206
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	2 cut(s)	369, 696
AfaI	GTAC	6 cut(s)	1070, 1591, 1671, 2429, 2550, 2609
AfiI	CCNNNNNNNGG	7 cut(s)	145, 151, 319, 988, 2188, 2281, 2529
AflII	CTTAAG	1 cut(s)	2561
AflIII	ACRYGT	1 cut(s)	1705
AjnI	CCWGG	2 cut(s)	1369, 2274
AjuI	GAANNNNNNNTTGG	2 cut(s)	1350, 1382
AluBI	AGCT	9 cut(s)	475, 604, 713, 1423, 1696, 1835, 2269, 2409, 2603
AluI	AGCT	9 cut(s)	475, 604, 713, 1423, 1696, 1835, 2269, 2409, 2603
Alw21I	GWGCWC	4 cut(s)	333, 342, 360, 366
Alw26I	GTCTC	3 cut(s)	580, 972, 1407
AlwI	GGATC	2 cut(s)	136, 451
Ama87I	CYCGRG	2 cut(s)	332, 1109
AoxI	GGCC	7 cut(s)	147, 349, 403, 840, 1850, 2049, 2206
ApeKI	GCWGC	5 cut(s)	601, 1181, 1314, 1885, 2409
ArsI	GACNNNNNNTTYG	2 cut(s)	1695, 1727
Asp700I	GAANNNNTTC	3 cut(s)	416, 689, 1976
AspLEI	GCGC	5 cut(s)	432, 434, 470, 621, 988
AspS9I	GGNCC	2 cut(s)	45, 2473
AsuC2I	CCSGG	2 cut(s)	146, 1793
AsuHPI	GGTGA	8 cut(s)	58, 88, 1149, 1252, 1646, 1674, 1756, 2380
AsuNHI	GCTAGC	1 cut(s)	2405
AvaI	CYCGRG	2 cut(s)	332, 1109
AvaII	GGWCC	2 cut(s)	45, 2473
BaeI	ACNNNNGTAYC	2 cut(s)	543, 576
BanII	GRGCYC	2 cut(s)	1260, 2523
BauI	CACGAG	2 cut(s)	353, 359
BbsI	GAAGAC	2 cut(s)	1539, 2020
Bbv12I	GWGCWC	4 cut(s)	333, 342, 360, 366
BbvI	GCAGC	5 cut(s)	613, 1168, 1326, 1897, 2396
BccI	CCATC	4 cut(s)	910, 1304, 2523, 2586
BceAI	ACGGC	4 cut(s)	364, 550, 557, 683
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	2 cut(s)	1371, 2276
BclI	TGATCA	1 cut(s)	1290
BcnI	CCSGG	2 cut(s)	146, 1793
BcoDI	GTCTC	3 cut(s)	580, 972, 1407
BfaI	CTAG	6 cut(s)	23, 1521, 1647, 1863, 2406, 2420
BfmI	CTRYAG	1 cut(s)	2494
BfrI	CTTAAG	1 cut(s)	2561
BglII	AGATCT	1 cut(s)	2310
Bme1390I	CCNGG	4 cut(s)	146, 1371, 1793, 2276
Bme18I	GGWCC	2 cut(s)	45, 2473
BmeT110I	CYCGRG	2 cut(s)	332, 1109
BmgT120I	GGNCC	2 cut(s)	45, 2473
BmiI	GGNNCC	3 cut(s)	1483, 1797, 2109
BmrFI	CCNGG	4 cut(s)	146, 1371, 1793, 2276
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	8 cut(s)	69, 307, 631, 1390, 1767, 1872, 1954, 2631
BmtI	GCTAGC	1 cut(s)	2409
BmuI	ACTGGG	1 cut(s)	406
BpiI	GAAGAC	2 cut(s)	1539, 2020
BpuEI	CTTGAG	2 cut(s)	368, 752
BpuMI	CCSGG	2 cut(s)	146, 1793
Bsa29I	ATCGAT	1 cut(s)	2527
BsaAI	YACGTR	1 cut(s)	2611
BsaHI	GRCGYC	2 cut(s)	369, 696
BsaI	GGTCTC	1 cut(s)	972
BsaJI	CCNNGG	5 cut(s)	150, 318, 532, 1357, 2329
BsaWI	WCCGGW	1 cut(s)	1738
Bsc4I	CCNNNNNNNGG	7 cut(s)	145, 151, 319, 988, 2188, 2281, 2529
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	401, 2041
Bse3DI	GCAATG	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	1371, 2276
BseCI	ATCGAT	1 cut(s)	2527
BseDI	CCNNGG	5 cut(s)	150, 318, 532, 1357, 2329
BseGI	GGATG	8 cut(s)	60, 646, 802, 925, 1315, 1969, 2219, 2505
BseLI	CCNNNNNNNGG	7 cut(s)	145, 151, 319, 988, 2188, 2281, 2529
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	822, 1239
BseNI	ACTGG	2 cut(s)	401, 2041
BsePI	GCGCGC	1 cut(s)	430
BseRI	GAGGAG	5 cut(s)	191, 194, 265, 695, 1127
BseX3I	CGGCCG	2 cut(s)	403, 2206
BseXI	GCAGC	5 cut(s)	613, 1168, 1326, 1897, 2396
BseYI	CCCAGC	2 cut(s)	992, 1835
BsgI	GTGCAG	1 cut(s)	1429
Bsh1236I	CGCG	4 cut(s)	430, 432, 468, 1223
Bsh1285I	CGRYCG	3 cut(s)	250, 406, 2209
BshFI	GGCC	7 cut(s)	149, 351, 405, 842, 1852, 2051, 2208
BshVI	ATCGAT	1 cut(s)	2527
BsiEI	CGRYCG	3 cut(s)	250, 406, 2209
BsiHKAI	GWGCWC	4 cut(s)	333, 342, 360, 366
BsiHKCI	CYCGRG	2 cut(s)	332, 1109
BsiSI	CCGG	6 cut(s)	69, 146, 189, 579, 1739, 1792
BslFI	GGGAC	3 cut(s)	466, 642, 944
BslI	CCNNNNNNNGG	7 cut(s)	145, 151, 319, 988, 2188, 2281, 2529
BsmAI	GTCTC	3 cut(s)	580, 972, 1407
BsmBI	CGTCTC	2 cut(s)	580, 1407
BsmFI	GGGAC	3 cut(s)	466, 642, 944
BsmI	GAATGC	6 cut(s)	621, 673, 754, 1183, 1215, 2248
BsnI	GGCC	7 cut(s)	149, 351, 405, 842, 1852, 2051, 2208
Bso31I	GGTCTC	1 cut(s)	972
BsoBI	CYCGRG	2 cut(s)	332, 1109
Bsp1286I	GDGCHC	6 cut(s)	333, 342, 360, 366, 1260, 2523
Bsp1407I	TGTACA	1 cut(s)	2427
Bsp143I	GATC	8 cut(s)	141, 456, 1003, 1123, 1290, 1984, 2004, 2310
Bsp68I	TCGCGA	1 cut(s)	1223
BspANI	GGCC	7 cut(s)	149, 351, 405, 842, 1852, 2051, 2208
BspCNI	CTCAG	2 cut(s)	823, 1240
BspDI	ATCGAT	1 cut(s)	2527
BspFNI	CGCG	4 cut(s)	430, 432, 468, 1223
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	3 cut(s)	1483, 1797, 2109
BspOI	GCTAGC	1 cut(s)	2409
BspPI	GGATC	2 cut(s)	136, 451
BspTI	CTTAAG	1 cut(s)	2561
BspTNI	GGTCTC	1 cut(s)	972
BsrBI	CCGCTC	1 cut(s)	1462
BsrDI	GCAATG	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	2427
BsrI	ACTGG	2 cut(s)	401, 2041
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	5 cut(s)	150, 318, 532, 1357, 2329
BssHII	GCGCGC	1 cut(s)	430
BssMI	GATC	8 cut(s)	141, 456, 1003, 1123, 1290, 1984, 2004, 2310
BssNI	GRCGYC	2 cut(s)	369, 696
BssSI	CACGAG	2 cut(s)	353, 359
BssT1I	CCWWGG	3 cut(s)	150, 1357, 2329
Bst2BI	CACGAG	2 cut(s)	353, 359
Bst2UI	CCWGG	2 cut(s)	1371, 2276
Bst4CI	ACNGT	3 cut(s)	1168, 1538, 2024
Bst6I	CTCTTC	1 cut(s)	1940
BstACI	GRCGYC	2 cut(s)	369, 696
BstAFI	CTTAAG	1 cut(s)	2561
BstAPI	GCANNNNNTGC	3 cut(s)	790, 2066, 2641
BstAUI	TGTACA	1 cut(s)	2427
BstBAI	YACGTR	1 cut(s)	2611
BstC8I	GCNNGC	8 cut(s)	432, 515, 584, 782, 903, 990, 1842, 2407
BstDEI	CTNAG	8 cut(s)	831, 909, 1248, 2081, 2194, 2291, 2447, 2545
BstDSI	CCRYGG	1 cut(s)	532
BstENI	CCTNNNNNAGG	3 cut(s)	317, 986, 2186
BstF5I	GGATG	8 cut(s)	60, 646, 802, 925, 1315, 1969, 2219, 2505
BstFNI	CGCG	4 cut(s)	430, 432, 468, 1223
BstHHI	GCGC	5 cut(s)	432, 434, 470, 621, 988
BstKTI	GATC	8 cut(s)	144, 459, 1006, 1126, 1293, 1987, 2007, 2313
BstMAI	GTCTC	3 cut(s)	580, 972, 1407
BstMBI	GATC	8 cut(s)	141, 456, 1003, 1123, 1290, 1984, 2004, 2310
BstMCI	CGRYCG	3 cut(s)	250, 406, 2209
BstNI	CCWGG	2 cut(s)	1371, 2276
BstNSI	RCATGY	2 cut(s)	1709, 1844
BstSCI	CCNGG	4 cut(s)	144, 1369, 1791, 2274
BstSFI	CTRYAG	1 cut(s)	2494
BstUI	CGCG	4 cut(s)	430, 432, 468, 1223
BstV1I	GCAGC	5 cut(s)	613, 1168, 1326, 1897, 2396
BstV2I	GAAGAC	2 cut(s)	1539, 2020
BstX2I	RGATCY	2 cut(s)	456, 2310
BstXI	CCANNNNNNTGG	1 cut(s)	1273
BstYI	RGATCY	2 cut(s)	456, 2310
BstZI	CGGCCG	2 cut(s)	403, 2206
Bsu15I	ATCGAT	1 cut(s)	2527
BsuRI	GGCC	7 cut(s)	149, 351, 405, 842, 1852, 2051, 2208
BsuTUI	ATCGAT	1 cut(s)	2527
BtgI	CCRYGG	1 cut(s)	532
BtgZI	GCGATG	1 cut(s)	2130
BtsCI	GGATG	8 cut(s)	60, 646, 802, 925, 1315, 1969, 2219, 2505
BtsIMutI	CAGTG	2 cut(s)	11, 2029
BtuMI	TCGCGA	1 cut(s)	1223
Cac8I	GCNNGC	8 cut(s)	432, 515, 584, 782, 903, 990, 1842, 2407
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	5 cut(s)	432, 434, 470, 621, 988
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	45, 2473
ClaI	ATCGAT	1 cut(s)	2527
CseI	GACGC	2 cut(s)	704, 1979
Csp6I	GTAC	6 cut(s)	1069, 1590, 1670, 2428, 2549, 2608
CviQI	GTAC	6 cut(s)	1069, 1590, 1670, 2428, 2549, 2608
DdeI	CTNAG	8 cut(s)	831, 909, 1248, 2081, 2194, 2291, 2447, 2545
DpnI	GATC	8 cut(s)	143, 458, 1005, 1125, 1292, 1986, 2006, 2312
DpnII	GATC	8 cut(s)	141, 456, 1003, 1123, 1290, 1984, 2004, 2310
EaeI	YGGCCR	4 cut(s)	147, 349, 403, 2206
EagI	CGGCCG	2 cut(s)	403, 2206
Eam1104I	CTCTTC	1 cut(s)	1940
EarI	CTCTTC	1 cut(s)	1940
EciI	GGCGGA	2 cut(s)	268, 818
EclXI	CGGCCG	2 cut(s)	403, 2206
Eco130I	CCWWGG	3 cut(s)	150, 1357, 2329
Eco147I	AGGCCT	1 cut(s)	1852
Eco24I	GRGCYC	2 cut(s)	1260, 2523
Eco31I	GGTCTC	1 cut(s)	972
Eco32I	GATATC	2 cut(s)	1155, 1219
Eco47I	GGWCC	2 cut(s)	45, 2473
Eco52I	CGGCCG	2 cut(s)	403, 2206
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	2 cut(s)	332, 1109
EcoNI	CCTNNNNNAGG	3 cut(s)	317, 986, 2186
EcoRII	CCWGG	2 cut(s)	1369, 2274
EcoRV	GATATC	2 cut(s)	1155, 1219
EcoT14I	CCWWGG	3 cut(s)	150, 1357, 2329
EcoT38I	GRGCYC	2 cut(s)	1260, 2523
ErhI	CCWWGG	3 cut(s)	150, 1357, 2329
Esp3I	CGTCTC	2 cut(s)	580, 1407
FalI	AAGNNNNNCTT	4 cut(s)	773, 805, 2544, 2576
FaqI	GGGAC	3 cut(s)	466, 642, 944
FauI	CCCGC	1 cut(s)	1298
FauNDI	CATATG	1 cut(s)	1330
FbaI	TGATCA	1 cut(s)	1290
FokI	GGATG	8 cut(s)	47, 653, 809, 932, 1322, 1976, 2206, 2512
FriOI	GRGCYC	2 cut(s)	1260, 2523
FspBI	CTAG	6 cut(s)	23, 1521, 1647, 1863, 2406, 2420
FspI	TGCGCA	1 cut(s)	987
GlaI	GCGC	5 cut(s)	431, 433, 469, 620, 987
GsaI	CCCAGC	2 cut(s)	996, 1839
HaeIII	GGCC	7 cut(s)	149, 351, 405, 842, 1852, 2051, 2208
HapII	CCGG	6 cut(s)	69, 146, 189, 579, 1739, 1792
HgaI	GACGC	2 cut(s)	704, 1979
HhaI	GCGC	5 cut(s)	432, 434, 470, 621, 988
Hin1I	GRCGYC	2 cut(s)	369, 696
Hin6I	GCGC	5 cut(s)	430, 432, 468, 619, 986
HinP1I	GCGC	5 cut(s)	430, 432, 468, 619, 986
HincII	GTYRAC	1 cut(s)	1321
HindII	GTYRAC	1 cut(s)	1321
HindIII	AAGCTT	1 cut(s)	1421
HinfI	GANTC	4 cut(s)	77, 630, 1107, 1465
HpaII	CCGG	6 cut(s)	69, 146, 189, 579, 1739, 1792
HphI	GGTGA	8 cut(s)	58, 88, 1149, 1252, 1646, 1674, 1756, 2380
Hpy166II	GTNNAC	4 cut(s)	1088, 1321, 1952, 2430
Hpy8I	GTNNAC	4 cut(s)	1088, 1321, 1952, 2430
Hpy99I	CGWCG	4 cut(s)	371, 530, 698, 704
HpyAV	CCTTC	6 cut(s)	178, 448, 1037, 1135, 1429, 1604
HpyCH4III	ACNGT	3 cut(s)	1168, 1538, 2024
HpyCH4IV	ACGT	3 cut(s)	134, 369, 2610
HpyF3I	CTNAG	8 cut(s)	831, 909, 1248, 2081, 2194, 2291, 2447, 2545
HpySE526I	ACGT	3 cut(s)	134, 369, 2610
Hsp92I	GRCGYC	2 cut(s)	369, 696
HspAI	GCGC	5 cut(s)	430, 432, 468, 619, 986
Ksp22I	TGATCA	1 cut(s)	1290
Kzo9I	GATC	8 cut(s)	141, 456, 1003, 1123, 1290, 1984, 2004, 2310
LmnI	GCTCC	3 cut(s)	345, 1144, 1832
Lsp1109I	GCAGC	5 cut(s)	613, 1168, 1326, 1897, 2396
LweI	GCATC	8 cut(s)	69, 307, 631, 1390, 1767, 1872, 1954, 2631
MaeI	CTAG	6 cut(s)	23, 1521, 1647, 1863, 2406, 2420
MaeII	ACGT	3 cut(s)	134, 369, 2610
MaeIII	GTNAC	7 cut(s)	51, 826, 1168, 1361, 1676, 1991, 2502
MalI	GATC	8 cut(s)	143, 458, 1005, 1125, 1292, 1986, 2006, 2312
MbiI	CCGCTC	1 cut(s)	1462
MboI	GATC	8 cut(s)	141, 456, 1003, 1123, 1290, 1984, 2004, 2310
MfeI	CAATTG	1 cut(s)	2141
MflI	RGATCY	2 cut(s)	456, 2310
MhlI	GDGCHC	6 cut(s)	333, 342, 360, 366, 1260, 2523
MluCI	AATT	9 cut(s)	87, 1237, 1710, 1757, 1906, 2141, 2320, 2400, 2437
MlyI	GAGTC	2 cut(s)	624, 1101
MmeI	TCCRAC	3 cut(s)	264, 1113, 1726
MroXI	GAANNNNTTC	3 cut(s)	416, 689, 1976
MseI	TTAA	6 cut(s)	1560, 1625, 2073, 2187, 2562, 2653
MslI	CAYNNNNRTG	1 cut(s)	2481
MspA1I	CMGCKG	1 cut(s)	604
MspCI	CTTAAG	1 cut(s)	2561
MspI	CCGG	6 cut(s)	69, 146, 189, 579, 1739, 1792
MspR9I	CCNGG	4 cut(s)	146, 1371, 1793, 2276
MunI	CAATTG	1 cut(s)	2141
Mva1269I	GAATGC	6 cut(s)	621, 673, 754, 1183, 1215, 2248
MvaI	CCWGG	2 cut(s)	1371, 2276
MvnI	CGCG	4 cut(s)	430, 432, 468, 1223
NciI	CCSGG	2 cut(s)	146, 1793
NdeI	CATATG	1 cut(s)	1330
NdeII	GATC	8 cut(s)	141, 456, 1003, 1123, 1290, 1984, 2004, 2310
NheI	GCTAGC	1 cut(s)	2405
NlaIV	GGNNCC	3 cut(s)	1483, 1797, 2109
NmeAIII	GCCGAG	1 cut(s)	1500
NmuCI	GTSAC	6 cut(s)	51, 826, 1168, 1676, 1991, 2502
NruI	TCGCGA	1 cut(s)	1223
NsbI	TGCGCA	1 cut(s)	987
NspI	RCATGY	2 cut(s)	1709, 1844
PaeI	GCATGC	1 cut(s)	1844
PaeR7I	CTCGAG	2 cut(s)	332, 1109
PagI	TCATGA	1 cut(s)	547
PauI	GCGCGC	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	1852
PciI	ACATGT	1 cut(s)	1705
PcsI	WCGNNNNNNNCGW	3 cut(s)	366, 534, 699
PctI	GAATGC	6 cut(s)	621, 673, 754, 1183, 1215, 2248
PdmI	GAANNNNTTC	3 cut(s)	416, 689, 1976
PfeI	GAWTC	2 cut(s)	77, 1465
PflFI	GACNNNGTC	4 cut(s)	49, 158, 398, 698
PflMI	CCANNNNNTGG	1 cut(s)	2529
PleI	GAGTC	2 cut(s)	624, 1101
PpsI	GAGTC	2 cut(s)	624, 1101
Ppu21I	YACGTR	1 cut(s)	2611
PscI	ACATGT	1 cut(s)	1705
Psp6I	CCWGG	2 cut(s)	1369, 2274
PspFI	CCCAGC	2 cut(s)	992, 1835
PspGI	CCWGG	2 cut(s)	1369, 2274
PspN4I	GGNNCC	3 cut(s)	1483, 1797, 2109
PspPI	GGNCC	2 cut(s)	45, 2473
PspXI	VCTCGAGB	2 cut(s)	332, 1109
PsrI	GAACNNNNNNTAC	2 cut(s)	404, 436
PsuI	RGATCY	2 cut(s)	456, 2310
PsyI	GACNNNGTC	4 cut(s)	49, 158, 398, 698
PteI	GCGCGC	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	604
RruI	TCGCGA	1 cut(s)	1223
RsaI	GTAC	6 cut(s)	1070, 1591, 1671, 2429, 2550, 2609
RsaNI	GTAC	6 cut(s)	1069, 1590, 1670, 2428, 2549, 2608
RseI	CAYNNNNRTG	1 cut(s)	2481
SaqAI	TTAA	6 cut(s)	1560, 1625, 2073, 2187, 2562, 2653
Sau3AI	GATC	8 cut(s)	141, 456, 1003, 1123, 1290, 1984, 2004, 2310
Sau96I	GGNCC	2 cut(s)	45, 2473
SchI	GAGTC	2 cut(s)	624, 1101
ScrFI	CCNGG	4 cut(s)	146, 1371, 1793, 2276
SduI	GDGCHC	6 cut(s)	333, 342, 360, 366, 1260, 2523
SfaNI	GCATC	8 cut(s)	69, 307, 631, 1390, 1767, 1872, 1954, 2631
SfcI	CTRYAG	1 cut(s)	2494
Sfr274I	CTCGAG	2 cut(s)	332, 1109
SinI	GGWCC	2 cut(s)	45, 2473
SlaI	CTCGAG	2 cut(s)	332, 1109
SmiMI	CAYNNNNRTG	1 cut(s)	2481
SmlI	CTYRAG	5 cut(s)	332, 383, 767, 1109, 2561
SmoI	CTYRAG	5 cut(s)	332, 383, 767, 1109, 2561
SphI	GCATGC	1 cut(s)	1844
Sse9I	AATT	9 cut(s)	87, 1237, 1710, 1757, 1906, 2141, 2320, 2400, 2437
SseBI	AGGCCT	1 cut(s)	1852
SspMI	CTAG	6 cut(s)	23, 1521, 1647, 1863, 2406, 2420
StuI	AGGCCT	1 cut(s)	1852
StyD4I	CCNGG	4 cut(s)	144, 1369, 1791, 2274
StyI	CCWWGG	3 cut(s)	150, 1357, 2329
TaaI	ACNGT	3 cut(s)	1168, 1538, 2024
TaiI	ACGT	3 cut(s)	137, 372, 2613
TasI	AATT	9 cut(s)	87, 1237, 1710, 1757, 1906, 2141, 2320, 2400, 2437
TatI	WGTACW	4 cut(s)	1589, 1669, 2427, 2548
TauI	GCSGC	6 cut(s)	110, 113, 116, 408, 1646, 2211
TfiI	GAWTC	2 cut(s)	77, 1465
Tru1I	TTAA	6 cut(s)	1560, 1625, 2073, 2187, 2562, 2653
Tru9I	TTAA	6 cut(s)	1560, 1625, 2073, 2187, 2562, 2653
TscAI	CASTG	2 cut(s)	18, 2029
TseFI	GTSAC	6 cut(s)	51, 826, 1168, 1676, 1991, 2502
TseI	GCWGC	5 cut(s)	601, 1181, 1314, 1885, 2409
Tsp45I	GTSAC	6 cut(s)	51, 826, 1168, 1676, 1991, 2502
TspDTI	ATGAA	8 cut(s)	536, 759, 1154, 1190, 1448, 1489, 1813, 2553
TspGWI	ACGGA	3 cut(s)	748, 1431, 2115
TspRI	CASTG	2 cut(s)	18, 2029
Tth111I	GACNNNGTC	4 cut(s)	49, 158, 398, 698
Van91I	CCANNNNNTGG	1 cut(s)	2529
Vha464I	CTTAAG	1 cut(s)	2561
VpaK11BI	GGWCC	2 cut(s)	45, 2473
XagI	CCTNNNNNAGG	3 cut(s)	317, 986, 2186
XceI	RCATGY	2 cut(s)	1709, 1844
XhoI	CTCGAG	2 cut(s)	332, 1109
XmnI	GAANNNNTTC	3 cut(s)	416, 689, 1976
XspI	CTAG	6 cut(s)	23, 1521, 1647, 1863, 2406, 2420
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.