Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000925.1

Orthogroup ID

OG0007971

Physical Location & Seq

Genomic Coordinates Reverse (-)

60864 .. 65154

Gene Structure 4291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000925.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2931 bp

atgcttttttcactgaaaaatctagccaaatcttcttctcataggaccaagtcacttggcatcctcaccggcattgattcaacttcaattccattcacccccaccgccgccgccgccgcaacaaccaccactacaacgtgcctgatcccggccaaggacatcgtcctctccttcaagcaatggttcaagtccggcaaccaccacctcctccaccaaatcttccaaatcctcaaagccaccaccgacagcgaccacttcaaccaccaccaccagcactcctcctccgacctcgccctctcgcatctcgacctccacctctccgaggctttggtgctcgaggtcctccgctacggccacgagcacgagcacgacgtcctctcctgcctcaagttcttcgactgggtcggccgccagaacagcttctaccacacgcgcgccaccttcaacgccattttcaagatcctctcgcgcgccaagctcatgtccctcatgctcgacttcctcgccgacttccgcaggcacaagttcgaccacggcgttcggtttcatgacacattggtcatgggctacgccgtctccggcaagcctgaagttgcgttgcagctgttcggcagaatgcgctttcagggactcgacctggatgcttttggctaccatgtgcttttgaatgctctggtggaggagaagtgtttcgacgccgttgaggtcgtggctaatcagatttccatgaggggttttgagaatgaaatcacgcattccgtcatgctcaagcggttctgcaagcagaacttgctggatgaggcggaggggtatttgagaagattagtgactgagggcaaggccaatggctctgcggtgggggttcttgttcgtgcattgtgtcagcataagatgttcgagcgtgctactaagttgatggatgagtttcgggacttgggggcggtttctatggagagtgcttatgctgtgtggattggagaccttgcgcaggctgggaggttagatcaagcattggagtttttacagagcaagaagtcattggaagggtatgttcccgatgtgtttaggtacaacattttgattggtaaacttttgagggaggttagactcgaggaggtttgtgatctcatgttggagatgaaggagcgtgagatatcacccgatacggtcactatgaatgctgcattgtgcttcttttgtaaagtgggaatgctggatatcgcgattgagttgtataattcaaggtctgagtttgggctcacccccaatagcatggcttacaactatttgatcaatactttctgcggggatggcagcgtggacgaagcatatggagtgttgaaatcctctcttgaccaaggttactttccaggtaggaaaacattttctatattggcagatgctttgtgcagagacggaaagcttgataagatgaaggagttggttatttttgctttagagcggaatcttatgccgagtggttccacctatgacaagttcattacaactctttgcaaaactaggagggtagaagacggttatttgatacatgaggaactcaacagaataagtgaagttcgtagagagagtacatacatcaacttgattgaaggtttttgcaagttaaataagggtgatattgccgctagactactgattgaaatgcaagtacatggtcactcaccaactcataagctgttccgagatgtaatttgctctttatgtgatacgggaaatccggtaaatacagaccagcaatttttcgccttattggagatgcagttgtcttgccgggaacctacttgtcgtatatacaacttcttcatctatggagctgggcatgccaaaaggcccgatttggctagtaaagtattagagatgatgcagcgtagtgggattgaacctaatttgagttctgacgttcttatgttgcagagttatttgaagagtgaacgatattcggatgctttgaactacttcaatgatctgcgtcacagaagaaagattaggagaagactttacagtgccatgattactggtatgtgcaaggctaaaaaagcagatattgcacttaacttacttagggaaatgagagaggacggagtggttccgagcgatgactgctatgagtttcttatacaattgctctgctggaataaagaatacgatatagcagtaatcctcattaaggacttagagaaagtcggccgccacattacatcctttattggcaacatacttctgttgcattctttgaaaagtcaagagctgtaccaggcttgggttcgtctaagagaggtgcaaatcgagatctctgataattcaatccttggtctgcttattggtgcattttctggtcgtatttgggtgagccaacagattgagaacttggaagaagtaattgctagctgctttccgctagacgcgtacacatacaatttattacttagatgtttcagtaatagcaacatggaccatgcttgtgcattgttctataggatgtcacagaaagggtatgagcccaatcgatggacttatgaaatcttatccaaggaatttaattgctgttcattgaagtctctattgcgagcttgctgtgggaaatactgtgaggtgagtagagcggaggatctttctctcaccacagctgctatggctgggtttactgttagcgatgatgaagatatgcagctgcaagaagcacactgcatctaccttccctgcaatgccttcttgaagacatacttgcagcagctatccctcacacttcttcatctgggggtgattctgaagggaaaagtaaatctgctgataaattctagaagctggaagctgaagcatgatgatgcaggacaagatgccattggagcagtcaatgaacttattcatatattggcacttgccatgaatagattgctgagcaagcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

976

Amino Acids

111.09

Weight (kDa)

6.73

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71210
fragaria_vesca	FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690
malus_domestica	MD05G1041400.v1.1 MD10G1047800.v1.1
prunus_persica	Prupe.8G057300_v2.0.a1 Prupe.8G057300_v2.0.a1
pyrus_communis	pycom05g03410 pycom10g03380 pycom17g22250
rosa_chinensis	RchiOBHm_Chr5g0055041
rosa_laevigata	RLG00000034959
rosa_multiflora	Rmu_sc0000925.1_g000011
rosa_roxburghii	Rroxscaffold_1G00025450
rosa_rugosa	Rorug05G0290400
rosa_samantha	Rh5AG360300 Rh5BG371300 Rh5CG393600 Rh5DG385100
rosa_wichuraiana	Rw5G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	557
AatII	GACGTC	1 cut(s)	375
Acc16I	TGCGCA	1 cut(s)	987
AccB7I	CCANNNNNTGG	1 cut(s)	2529
AccBSI	CCGCTC	2 cut(s)	1462, 2624
AccII	CGCG	6 cut(s)	433, 435, 469, 471, 1223, 2426
AclWI	GGATC	3 cut(s)	139, 454, 2637
AcoI	YGGCCR	4 cut(s)	150, 352, 406, 2206
AcsI	RAATTY	2 cut(s)	2555, 2815
AcuI	CTGAAG	3 cut(s)	609, 2810, 2855
AcyI	GRCGYC	2 cut(s)	372, 696
AfaI	GTAC	5 cut(s)	1070, 1591, 1671, 2273, 2429
AfiI	CCNNNNNNNGG	7 cut(s)	148, 154, 322, 988, 2188, 2281, 2529
AflIII	ACRYGT	1 cut(s)	2424
AjnI	CCWGG	3 cut(s)	636, 1369, 2274
AjuI	GAANNNNNNNTTGG	2 cut(s)	1350, 1382
Alw21I	GWGCWC	3 cut(s)	336, 363, 369
Alw26I	GTCTC	4 cut(s)	580, 972, 1407, 2583
AlwI	GGATC	3 cut(s)	139, 454, 2637
Ama87I	CYCGRG	2 cut(s)	335, 1109
AoxI	GGCC	6 cut(s)	150, 352, 406, 840, 1850, 2206
ApoI	RAATTY	2 cut(s)	2555, 2815
Asp700I	GAANNNNTTC	4 cut(s)	419, 689, 1976, 2883
AspLEI	GCGC	6 cut(s)	435, 437, 471, 473, 621, 988
AspS9I	GGNCC	4 cut(s)	45, 340, 1851, 2473
AsuC2I	CCSGG	2 cut(s)	149, 1793
AsuNHI	GCTAGC	1 cut(s)	2405
AvaI	CYCGRG	2 cut(s)	335, 1109
AvaII	GGWCC	3 cut(s)	45, 340, 2473
BanII	GRGCYC	2 cut(s)	1260, 2523
BauI	CACGAG	2 cut(s)	356, 362
BbsI	GAAGAC	3 cut(s)	1539, 2020, 2744
Bbv12I	GWGCWC	3 cut(s)	336, 363, 369
BccI	CCATC	3 cut(s)	910, 1304, 2523
BceAI	ACGGC	4 cut(s)	367, 550, 557, 683
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	3 cut(s)	638, 1371, 2276
BclI	TGATCA	1 cut(s)	1290
BcnI	CCSGG	2 cut(s)	149, 1793
BcoDI	GTCTC	4 cut(s)	580, 972, 1407, 2583
BfaI	CTAG	7 cut(s)	23, 1521, 1647, 1863, 2406, 2420, 2820
BfmI	CTRYAG	1 cut(s)	2494
BglII	AGATCT	1 cut(s)	2310
BlpI	GCTNAGC	1 cut(s)	2918
Bme1390I	CCNGG	5 cut(s)	149, 638, 1371, 1793, 2276
Bme18I	GGWCC	3 cut(s)	45, 340, 2473
BmeT110I	CYCGRG	2 cut(s)	335, 1109
BmgT120I	GGNCC	4 cut(s)	45, 340, 1851, 2473
BmiI	GGNNCC	3 cut(s)	1483, 1797, 2109
BmrFI	CCNGG	5 cut(s)	149, 638, 1371, 1793, 2276
BmrI	ACTGGG	1 cut(s)	409
BmtI	GCTAGC	1 cut(s)	2409
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	3 cut(s)	1539, 2020, 2744
Bpu1102I	GCTNAGC	1 cut(s)	2918
BpuEI	CTTGAG	2 cut(s)	371, 752
BpuMI	CCSGG	2 cut(s)	149, 1793
Bsa29I	ATCGAT	1 cut(s)	2527
BsaHI	GRCGYC	2 cut(s)	372, 696
BsaI	GGTCTC	1 cut(s)	972
BsaJI	CCNNGG	6 cut(s)	153, 321, 532, 1357, 2329, 2550
BsaWI	WCCGGW	1 cut(s)	1738
Bsc4I	CCNNNNNNNGG	7 cut(s)	148, 154, 322, 988, 2188, 2281, 2529
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	404, 2041
Bse3DI	GCAATG	2 cut(s)	185, 2731
BseBI	CCWGG	3 cut(s)	638, 1371, 2276
BseCI	ATCGAT	1 cut(s)	2527
BseDI	CCNNGG	6 cut(s)	153, 321, 532, 1357, 2329, 2550
BseGI	GGATG	8 cut(s)	60, 646, 802, 925, 1315, 1969, 2219, 2505
BseLI	CCNNNNNNNGG	7 cut(s)	148, 154, 322, 988, 2188, 2281, 2529
BseMI	GCAATG	2 cut(s)	185, 2731
BseMII	CTCAG	3 cut(s)	822, 1239, 2909
BseNI	ACTGG	2 cut(s)	404, 2041
BsePI	GCGCGC	2 cut(s)	433, 469
BseRI	GAGGAG	5 cut(s)	197, 268, 271, 695, 1127
BseX3I	CGGCCG	2 cut(s)	406, 2206
BseYI	CCCAGC	3 cut(s)	992, 1835, 2657
BsgI	GTGCAG	1 cut(s)	1429
Bsh1236I	CGCG	6 cut(s)	433, 435, 469, 471, 1223, 2426
Bsh1285I	CGRYCG	2 cut(s)	409, 2209
BshFI	GGCC	6 cut(s)	152, 354, 408, 842, 1852, 2208
BshVI	ATCGAT	1 cut(s)	2527
BsiEI	CGRYCG	2 cut(s)	409, 2209
BsiHKAI	GWGCWC	3 cut(s)	336, 363, 369
BsiHKCI	CYCGRG	2 cut(s)	335, 1109
BsiSI	CCGG	6 cut(s)	69, 149, 192, 579, 1739, 1792
BslFI	GGGAC	3 cut(s)	469, 642, 944
BslI	CCNNNNNNNGG	7 cut(s)	148, 154, 322, 988, 2188, 2281, 2529
BsmAI	GTCTC	4 cut(s)	580, 972, 1407, 2583
BsmBI	CGTCTC	2 cut(s)	580, 1407
BsmFI	GGGAC	3 cut(s)	469, 642, 944
BsmI	GAATGC	6 cut(s)	621, 673, 754, 1183, 1215, 2248
BsnI	GGCC	6 cut(s)	152, 354, 408, 842, 1852, 2208
Bso31I	GGTCTC	1 cut(s)	972
BsoBI	CYCGRG	2 cut(s)	335, 1109
Bsp1286I	GDGCHC	5 cut(s)	336, 363, 369, 1260, 2523
Bsp143I	GATC	8 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310, 2629
Bsp1720I	GCTNAGC	1 cut(s)	2918
Bsp68I	TCGCGA	1 cut(s)	1223
BspANI	GGCC	6 cut(s)	152, 354, 408, 842, 1852, 2208
BspCNI	CTCAG	3 cut(s)	823, 1240, 2910
BspDI	ATCGAT	1 cut(s)	2527
BspFNI	CGCG	6 cut(s)	433, 435, 469, 471, 1223, 2426
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	3 cut(s)	1483, 1797, 2109
BspOI	GCTAGC	1 cut(s)	2409
BspPI	GGATC	3 cut(s)	139, 454, 2637
BspTNI	GGTCTC	1 cut(s)	972
BsrBI	CCGCTC	2 cut(s)	1462, 2624
BsrDI	GCAATG	2 cut(s)	185, 2731
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	404, 2041
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	6 cut(s)	153, 321, 532, 1357, 2329, 2550
BssHII	GCGCGC	2 cut(s)	433, 469
BssMI	GATC	8 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310, 2629
BssNI	GRCGYC	2 cut(s)	372, 696
BssSI	CACGAG	2 cut(s)	356, 362
BssT1I	CCWWGG	4 cut(s)	153, 1357, 2329, 2550
Bst2BI	CACGAG	2 cut(s)	356, 362
Bst2UI	CCWGG	3 cut(s)	638, 1371, 2276
Bst4CI	ACNGT	5 cut(s)	1168, 1538, 2024, 2609, 2668
Bst6I	CTCTTC	1 cut(s)	1940
BstACI	GRCGYC	2 cut(s)	372, 696
BstAPI	GCANNNNNTGC	2 cut(s)	790, 2066
BstDEI	CTNAG	8 cut(s)	831, 909, 1248, 2081, 2194, 2291, 2447, 2918
BstDSI	CCRYGG	1 cut(s)	532
BstENI	CCTNNNNNAGG	3 cut(s)	320, 986, 2186
BstF5I	GGATG	8 cut(s)	60, 646, 802, 925, 1315, 1969, 2219, 2505
BstFNI	CGCG	6 cut(s)	433, 435, 469, 471, 1223, 2426
BstHHI	GCGC	6 cut(s)	435, 437, 471, 473, 621, 988
BstKTI	GATC	8 cut(s)	147, 462, 1006, 1126, 1293, 1987, 2313, 2632
BstMAI	GTCTC	4 cut(s)	580, 972, 1407, 2583
BstMBI	GATC	8 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310, 2629
BstMCI	CGRYCG	2 cut(s)	409, 2209
BstNI	CCWGG	3 cut(s)	638, 1371, 2276
BstNSI	RCATGY	1 cut(s)	1844
BstSCI	CCNGG	5 cut(s)	147, 636, 1369, 1791, 2274
BstSFI	CTRYAG	1 cut(s)	2494
BstUI	CGCG	6 cut(s)	433, 435, 469, 471, 1223, 2426
BstV2I	GAAGAC	3 cut(s)	1539, 2020, 2744
BstX2I	RGATCY	3 cut(s)	459, 2310, 2629
BstXI	CCANNNNNNTGG	1 cut(s)	1273
BstYI	RGATCY	3 cut(s)	459, 2310, 2629
BstZI	CGGCCG	2 cut(s)	406, 2206
Bsu15I	ATCGAT	1 cut(s)	2527
BsuRI	GGCC	6 cut(s)	152, 354, 408, 842, 1852, 2208
BsuTUI	ATCGAT	1 cut(s)	2527
BtgI	CCRYGG	1 cut(s)	532
BtgZI	GCGATG	2 cut(s)	2130, 2688
BtsCI	GGATG	8 cut(s)	60, 646, 802, 925, 1315, 1969, 2219, 2505
BtsI	GCAGTG	1 cut(s)	2704
BtsIMutI	CAGTG	3 cut(s)	11, 2029, 2704
BtuMI	TCGCGA	1 cut(s)	1223
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	6 cut(s)	435, 437, 471, 473, 621, 988
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	45, 340, 1851, 2473
ClaI	ATCGAT	1 cut(s)	2527
CseI	GACGC	3 cut(s)	704, 1979, 2432
Csp6I	GTAC	5 cut(s)	1069, 1590, 1670, 2272, 2428
CviQI	GTAC	5 cut(s)	1069, 1590, 1670, 2272, 2428
DdeI	CTNAG	8 cut(s)	831, 909, 1248, 2081, 2194, 2291, 2447, 2918
DpnI	GATC	8 cut(s)	146, 461, 1005, 1125, 1292, 1986, 2312, 2631
DpnII	GATC	8 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310, 2629
DrdI	GACNNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	557
EaeI	YGGCCR	4 cut(s)	150, 352, 406, 2206
EagI	CGGCCG	2 cut(s)	406, 2206
Eam1104I	CTCTTC	1 cut(s)	1940
EarI	CTCTTC	1 cut(s)	1940
EciI	GGCGGA	1 cut(s)	818
EclXI	CGGCCG	2 cut(s)	406, 2206
Eco130I	CCWWGG	4 cut(s)	153, 1357, 2329, 2550
Eco24I	GRGCYC	2 cut(s)	1260, 2523
Eco31I	GGTCTC	1 cut(s)	972
Eco32I	GATATC	2 cut(s)	1155, 1219
Eco47I	GGWCC	3 cut(s)	45, 340, 2473
Eco52I	CGGCCG	2 cut(s)	406, 2206
Eco57I	CTGAAG	3 cut(s)	609, 2810, 2855
Eco88I	CYCGRG	2 cut(s)	335, 1109
EcoNI	CCTNNNNNAGG	3 cut(s)	320, 986, 2186
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	3 cut(s)	636, 1369, 2274
EcoRV	GATATC	2 cut(s)	1155, 1219
EcoT14I	CCWWGG	4 cut(s)	153, 1357, 2329, 2550
EcoT38I	GRGCYC	2 cut(s)	1260, 2523
ErhI	CCWWGG	4 cut(s)	153, 1357, 2329, 2550
Esp3I	CGTCTC	2 cut(s)	580, 1407
FalI	AAGNNNNNCTT	4 cut(s)	773, 805, 2729, 2761
FaqI	GGGAC	3 cut(s)	469, 642, 944
FauI	CCCGC	1 cut(s)	1298
FauNDI	CATATG	1 cut(s)	1330
FbaI	TGATCA	1 cut(s)	1290
FokI	GGATG	8 cut(s)	47, 653, 809, 932, 1322, 1976, 2206, 2512
FriOI	GRGCYC	2 cut(s)	1260, 2523
FspBI	CTAG	7 cut(s)	23, 1521, 1647, 1863, 2406, 2420, 2820
FspI	TGCGCA	1 cut(s)	987
GlaI	GCGC	6 cut(s)	434, 436, 470, 472, 620, 987
GsaI	CCCAGC	3 cut(s)	996, 1839, 2661
HaeIII	GGCC	6 cut(s)	152, 354, 408, 842, 1852, 2208
HapII	CCGG	6 cut(s)	69, 149, 192, 579, 1739, 1792
HgaI	GACGC	3 cut(s)	704, 1979, 2432
HhaI	GCGC	6 cut(s)	435, 437, 471, 473, 621, 988
Hin1I	GRCGYC	2 cut(s)	372, 696
Hin6I	GCGC	6 cut(s)	433, 435, 469, 471, 619, 986
HinP1I	GCGC	6 cut(s)	433, 435, 469, 471, 619, 986
HindIII	AAGCTT	1 cut(s)	1421
HinfI	GANTC	5 cut(s)	77, 630, 1107, 1465, 2785
HpaII	CCGG	6 cut(s)	69, 149, 192, 579, 1739, 1792
Hpy166II	GTNNAC	5 cut(s)	1088, 1321, 1952, 2430, 2664
Hpy8I	GTNNAC	5 cut(s)	1088, 1321, 1952, 2430, 2664
Hpy99I	CGWCG	2 cut(s)	374, 698
HpyAV	CCTTC	9 cut(s)	181, 451, 1037, 1135, 1429, 1604, 2726, 2740, 2785
HpyCH4III	ACNGT	5 cut(s)	1168, 1538, 2024, 2609, 2668
HpyCH4IV	ACGT	3 cut(s)	137, 372, 1920
HpyF3I	CTNAG	8 cut(s)	831, 909, 1248, 2081, 2194, 2291, 2447, 2918
HpySE526I	ACGT	3 cut(s)	137, 372, 1920
Hsp92I	GRCGYC	2 cut(s)	372, 696
HspAI	GCGC	6 cut(s)	433, 435, 469, 471, 619, 986
Ksp22I	TGATCA	1 cut(s)	1290
Kzo9I	GATC	8 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310, 2629
LmnI	GCTCC	3 cut(s)	1144, 1832, 2867
MaeI	CTAG	7 cut(s)	23, 1521, 1647, 1863, 2406, 2420, 2820
MaeII	ACGT	3 cut(s)	137, 372, 1920
MaeIII	GTNAC	7 cut(s)	51, 826, 1168, 1361, 1676, 1991, 2502
MalI	GATC	8 cut(s)	146, 461, 1005, 1125, 1292, 1986, 2312, 2631
MbiI	CCGCTC	2 cut(s)	1462, 2624
MboI	GATC	8 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310, 2629
MfeI	CAATTG	1 cut(s)	2141
MflI	RGATCY	3 cut(s)	459, 2310, 2629
MhlI	GDGCHC	5 cut(s)	336, 363, 369, 1260, 2523
MluI	ACGCGT	1 cut(s)	2424
MlyI	GAGTC	2 cut(s)	624, 1101
MmeI	TCCRAC	2 cut(s)	309, 1113
MroXI	GAANNNNTTC	4 cut(s)	419, 689, 1976, 2883
MseI	TTAA	4 cut(s)	1625, 2073, 2187, 2559
MslI	CAYNNNNRTG	2 cut(s)	2481, 2844
MspA1I	CMGCKG	3 cut(s)	604, 2648, 2692
MspI	CCGG	6 cut(s)	69, 149, 192, 579, 1739, 1792
MspR9I	CCNGG	5 cut(s)	149, 638, 1371, 1793, 2276
MunI	CAATTG	1 cut(s)	2141
Mva1269I	GAATGC	6 cut(s)	621, 673, 754, 1183, 1215, 2248
MvaI	CCWGG	3 cut(s)	638, 1371, 2276
MvnI	CGCG	6 cut(s)	433, 435, 469, 471, 1223, 2426
NciI	CCSGG	2 cut(s)	149, 1793
NdeI	CATATG	1 cut(s)	1330
NdeII	GATC	8 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310, 2629
NheI	GCTAGC	1 cut(s)	2405
NlaIV	GGNNCC	3 cut(s)	1483, 1797, 2109
NmeAIII	GCCGAG	1 cut(s)	1500
NmuCI	GTSAC	6 cut(s)	51, 826, 1168, 1676, 1991, 2502
NruI	TCGCGA	1 cut(s)	1223
NsbI	TGCGCA	1 cut(s)	987
NspI	RCATGY	1 cut(s)	1844
PaeI	GCATGC	1 cut(s)	1844
PaeR7I	CTCGAG	2 cut(s)	335, 1109
PagI	TCATGA	1 cut(s)	547
PauI	GCGCGC	2 cut(s)	433, 469
PcsI	WCGNNNNNNNCGW	2 cut(s)	369, 534
PctI	GAATGC	6 cut(s)	621, 673, 754, 1183, 1215, 2248
PdmI	GAANNNNTTC	4 cut(s)	419, 689, 1976, 2883
PfeI	GAWTC	3 cut(s)	77, 1465, 2785
PflFI	GACNNNGTC	3 cut(s)	49, 161, 401
PflMI	CCANNNNNTGG	1 cut(s)	2529
PleI	GAGTC	2 cut(s)	624, 1101
PpsI	GAGTC	2 cut(s)	624, 1101
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	3 cut(s)	636, 1369, 2274
PspFI	CCCAGC	3 cut(s)	992, 1835, 2657
PspGI	CCWGG	3 cut(s)	636, 1369, 2274
PspN4I	GGNNCC	3 cut(s)	1483, 1797, 2109
PspPI	GGNCC	4 cut(s)	45, 340, 1851, 2473
PspPPI	RGGWCCY	1 cut(s)	340
PspXI	VCTCGAGB	2 cut(s)	335, 1109
PsrI	GAACNNNNNNTAC	2 cut(s)	407, 439
PsuI	RGATCY	3 cut(s)	459, 2310, 2629
PsyI	GACNNNGTC	3 cut(s)	49, 161, 401
PteI	GCGCGC	2 cut(s)	433, 469
PvuII	CAGCTG	3 cut(s)	604, 2648, 2692
RruI	TCGCGA	1 cut(s)	1223
RsaI	GTAC	5 cut(s)	1070, 1591, 1671, 2273, 2429
RsaNI	GTAC	5 cut(s)	1069, 1590, 1670, 2272, 2428
RseI	CAYNNNNRTG	2 cut(s)	2481, 2844
SaqAI	TTAA	4 cut(s)	1625, 2073, 2187, 2559
Sau3AI	GATC	8 cut(s)	144, 459, 1003, 1123, 1290, 1984, 2310, 2629
Sau96I	GGNCC	4 cut(s)	45, 340, 1851, 2473
SchI	GAGTC	2 cut(s)	624, 1101
ScrFI	CCNGG	5 cut(s)	149, 638, 1371, 1793, 2276
SduI	GDGCHC	5 cut(s)	336, 363, 369, 1260, 2523
SfcI	CTRYAG	1 cut(s)	2494
Sfr274I	CTCGAG	2 cut(s)	335, 1109
SinI	GGWCC	3 cut(s)	45, 340, 2473
SlaI	CTCGAG	2 cut(s)	335, 1109
SmiMI	CAYNNNNRTG	2 cut(s)	2481, 2844
SmlI	CTYRAG	4 cut(s)	335, 386, 767, 1109
SmoI	CTYRAG	4 cut(s)	335, 386, 767, 1109
SphI	GCATGC	1 cut(s)	1844
SspMI	CTAG	7 cut(s)	23, 1521, 1647, 1863, 2406, 2420, 2820
StyD4I	CCNGG	5 cut(s)	147, 636, 1369, 1791, 2274
StyI	CCWWGG	4 cut(s)	153, 1357, 2329, 2550
TaaI	ACNGT	5 cut(s)	1168, 1538, 2024, 2609, 2668
TaiI	ACGT	3 cut(s)	140, 375, 1923
TatI	WGTACW	2 cut(s)	1589, 1669
TauI	GCSGC	7 cut(s)	110, 113, 116, 119, 411, 1646, 2211
TfiI	GAWTC	3 cut(s)	77, 1465, 2785
Tru1I	TTAA	4 cut(s)	1625, 2073, 2187, 2559
Tru9I	TTAA	4 cut(s)	1625, 2073, 2187, 2559
TscAI	CASTG	3 cut(s)	18, 2029, 2711
TseFI	GTSAC	6 cut(s)	51, 826, 1168, 1676, 1991, 2502
Tsp45I	GTSAC	6 cut(s)	51, 826, 1168, 1676, 1991, 2502
TspGWI	ACGGA	3 cut(s)	748, 1431, 2115
TspRI	CASTG	3 cut(s)	18, 2029, 2711
Tth111I	GACNNNGTC	3 cut(s)	49, 161, 401
Van91I	CCANNNNNTGG	1 cut(s)	2529
VpaK11BI	GGWCC	3 cut(s)	45, 340, 2473
XagI	CCTNNNNNAGG	3 cut(s)	320, 986, 2186
XapI	RAATTY	2 cut(s)	2555, 2815
XbaI	TCTAGA	1 cut(s)	2819
XceI	RCATGY	1 cut(s)	1844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2650
XhoI	CTCGAG	2 cut(s)	335, 1109
XmnI	GAANNNNTTC	4 cut(s)	419, 689, 1976, 2883
XspI	CTAG	7 cut(s)	23, 1521, 1647, 1863, 2406, 2420, 2820
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.