Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007971

Physical Location & Seq

Genomic Coordinates Forward (+)

60621504 .. 60624146

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG360300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

ATGCTTTTTTCACTGAAAAATCTAGCCAAATCTTCTTCTCATAGGACCAAGTCACTTGGCATCCTCACCGGCATTGATTCAACTTCAATTCCATTCACCACCGCCGCAACAACCACCACTACAACGTGCCTGATCCCGGCCAAGGACATCGTCCTCTCCTTCAAGCAATGGTTCAAGTCCGGCAACCGCCTCCTCCTCCACCAAATCTTCCAAATCCTCAAAGCCACCTCCGACAGCGACCACTTCAACCACCAGCAGCAGCACTCCTCCTCCGACCTCGCCCTCTCGCATCTCGACCTCCACCTCTCCGAGGCTTTGGTGCTCGAGGTCCTCCGCTACGGCCACGAGCACGAGCACGACGTCCTCTCCTGCCTCAAGTTCTTCGACTGGGTCGGCCGCCAGAACAGCTTCTACCACACGCGCGCCACCTTCAACGCCATTTTCAAGATCCTCTCACGCGCCAAGCTCATGTCCCTCATGCTCGACTTCCTCGCCGACTTCCGCAGGCACAAGTTCGACCACGGCGTTCGGTTTCATGATACATTGGTCATGGGCTACGCCGTCTCCGGCAAGCCTGAAGTTGCGTTGCAGCTGTTCGGCAGAATGCGCTTTCAGGGACTCGACTTGGATGCTTTTGGCTACCATGTGCTTTTGAATGCTCTGGTGGAGGAGAAGTGTTTCGACGCCGTTGAGGTCGTGGCTAATCAGATTTCCATGAGGGGTTTTGAGAATGAAATCACGCATTCCGTCATGCTCAAGCGGTTCTGCAAGCAGAACTTGCTGGATGAGGCGGAGGGGTATTTGAGAAGATTAGTGACTGAGGGCAAGGCCAATGGCTCTGCGGTGGGGGTTCTTGTTCGTGCATTGTGTCACCATAAGATGTTCGAGCGTGCTACTAAGTTGATGGATGAGTTTCGGGACTTGGGGGCGGTTTCTATGGAGAGTGCTTATGCTGTGTGGATTGGAGACCTTGCGCAGGCTGGGAGGTTAGATCAAGCATTGGAGTTTTTACAGAGCAAGAAGTCATTGGAAGGGTATGTTCCCGATGTCTTTAGGTACAACATTTTGATTGGTAAACTTTTGAGGGAGGTTAGACTCGAGGAGGTTTGTGATCTCATGTTGGAGATGAAGGAGCGTGAGATATCACCCGATACGGTCACTATGAATGCTGCATTGTGCTTCTTTTGTAAAGTGGGAATGCTGGATATCGCGATTGAGTTGTATAATTCAAGGTCTGAGTTTGGGCTCACCCCCAATAGCATGGCTTACAACTATTTGATCAATACTTTCTGCGGGGATGGCAGCGTTGACGAAGCATATGGAGTGTTGAAATCCTCTCTTGACCAAGGTTACTTTCCAGGTAGGAAAACATTTTCTATATTGGCAGATGCTTTGTGCAGAGAGGGAAAGCTTGATAAGATGAAGGAGTTGGTTATTTTTGCTTTAGAGCGGAATCTTATGCCGAGTGGTTCCACCTATGACAAGTTCATTACAACTCTTTGCAAAACTAGGAGGGTAGAAGACGGTTATTTGATACATGAGGAACTTAACAGAATAAGTGAAGTTCGTAGAGAGAGTACATACATCAACTTGATTGAAGGTTTTTGCAAGTTAAATAAGGGTGATATTGCCGCTAGACTTCTGATTGAAATGCAAGTACATGGTCACTCACCAACTCATAAGCTGTTCCGAGATGTAATTTGCTCTTTATGTGATACTGGAAATCCGGTAAATACAGACCAGCAATTTTTCACCTTATTGGAGATGCAGTTGTCTTGCCGGGAACCTACTTGTCGTATATACAACTTCTTCATCTATGGAGCTGGGCATGCCAAAAGGCCCGATTTGGCTAGTAAAGTATTAGAGATGATGCAGCGTAGTGGGATTGAACCTAATTTGAGTTCTGATGTTCTTATGTTGCAGAGTTATTTGAAGAGTGAACGATATTCGGATGCTTTGAACTACTTCAATGATCTGCGTCACAGAAGAAAGATCAGGAGAAGACTTTACAGTGCCATGATTACTGGTATGTGCAAGGCTAAAAAAGCAGATATTGCACTTAACTTACTTAGGGAAATGAGAGAGGACGGAGTGGTTCCGAGCGATGACTGCTATGAGTTTCTTATACAATTGCTCTGCTGGAATAAAGAATACGATATAGCAGTAATCCTCATTAAGGACTTAGAGAAAGTCGGCCGCCACATTACATCCTTTATTGGCAACATACTTCTGTTGCATTCTTTGAAAAGTCAAGAGCTGTACCAGGCTTGGGTTCGTCTAAGAGAGGTGCAAATCGAGATCTCTGATAATTCAATCCTTGGTCTGCTTATTGGTGCATTTTCAGGTCGTATTTGGGTGAGCCAACAGATTGAGAACTTGGAAGAAGTAATTGCTAGCTGCTTTCCGCTAGACGTGTACACATACAATTTATTACTTAGATGTTTCAGTAATAGCAACATGGACCATGCTTGTGCATTGTTCTATAGGATGTCACAGAAAGGGTATGAGCCCAATCGATGGACTTATGAAATCTTAGTACAAGGTTTTCTTAAGCATGGGAGGACAGACGAGGCAAACAGATGGCTAAAAGCTATGTACGTGAAAGGTTTTAGTCCAAACAAGCAAACGATGCGATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

880

Amino Acids

100.93

Weight (kDa)

7.33

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	348 - 390	3.3e-08	PPR repeat family
PPR_2	PF13041	383 - 431	2.2e-10	PPR repeat family
PPR_1	PF12854	415 - 444	5.6e-06	PPR repeat
PPR_2	PF13041	418 - 467	9.2e-08	PPR repeat family
PPR_2	PF13041	670 - 713	5.3e-08	PPR repeat family
PPR_2	PF13041	804 - 851	4.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71210
fragaria_vesca	FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690 FvH4_3g29690
malus_domestica	MD05G1041400.v1.1 MD10G1047800.v1.1
prunus_persica	Prupe.8G057300_v2.0.a1 Prupe.8G057300_v2.0.a1
pyrus_communis	pycom05g03410 pycom10g03380 pycom17g22250
rosa_chinensis	RchiOBHm_Chr5g0055041
rosa_laevigata	RLG00000034959
rosa_multiflora	Rmu_sc0000925.1_g000011
rosa_roxburghii	Rroxscaffold_1G00025450
rosa_rugosa	Rorug05G0290400
rosa_samantha	Rh5AG360300 Rh5BG371300 Rh5CG393600 Rh5DG385100
rosa_wichuraiana	Rw5G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
Acc16I	TGCGCA	1 cut(s)	975
AccB7I	CCANNNNNTGG	1 cut(s)	2517
AccBSI	CCGCTC	1 cut(s)	1450
AccII	CGCG	4 cut(s)	421, 423, 459, 1211
AclWI	GGATC	2 cut(s)	127, 442
AcoI	YGGCCR	4 cut(s)	138, 340, 394, 2194
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	2 cut(s)	360, 684
AfaI	GTAC	7 cut(s)	1058, 1579, 1659, 2261, 2417, 2538, 2597
AfiI	CCNNNNNNNGG	7 cut(s)	136, 142, 310, 976, 2176, 2269, 2517
AflII	CTTAAG	1 cut(s)	2549
AflIII	ACRYGT	1 cut(s)	2412
AjiI	CACGTC	1 cut(s)	2413
AjnI	CCWGG	2 cut(s)	1357, 2262
AjuI	GAANNNNNNNTTGG	2 cut(s)	1338, 1370
AluBI	AGCT	9 cut(s)	408, 466, 592, 1411, 1684, 1823, 2257, 2397, 2591
AluI	AGCT	9 cut(s)	408, 466, 592, 1411, 1684, 1823, 2257, 2397, 2591
Alw21I	GWGCWC	3 cut(s)	324, 351, 357
Alw26I	GTCTC	2 cut(s)	568, 960
AlwI	GGATC	2 cut(s)	127, 442
Ama87I	CYCGRG	2 cut(s)	323, 1097
AoxI	GGCC	6 cut(s)	138, 340, 394, 828, 1838, 2194
ApeKI	GCWGC	7 cut(s)	256, 259, 589, 1169, 1302, 1873, 2397
Asp700I	GAANNNNTTC	3 cut(s)	407, 677, 1964
AspLEI	GCGC	5 cut(s)	423, 425, 461, 609, 976
AspS9I	GGNCC	4 cut(s)	45, 328, 1839, 2461
AsuC2I	CCSGG	2 cut(s)	137, 1781
AsuHPI	GGTGA	9 cut(s)	58, 88, 863, 1137, 1240, 1634, 1662, 1744, 2368
AsuNHI	GCTAGC	1 cut(s)	2393
AvaI	CYCGRG	2 cut(s)	323, 1097
AvaII	GGWCC	3 cut(s)	45, 328, 2461
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BanII	GRGCYC	2 cut(s)	1248, 2511
BauI	CACGAG	2 cut(s)	344, 350
BbsI	GAAGAC	2 cut(s)	1527, 2008
Bbv12I	GWGCWC	3 cut(s)	324, 351, 357
BbvI	GCAGC	7 cut(s)	268, 271, 601, 1156, 1314, 1885, 2384
BccI	CCATC	4 cut(s)	898, 1292, 2511, 2574
BceAI	ACGGC	4 cut(s)	355, 538, 545, 671
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BciT130I	CCWGG	2 cut(s)	1359, 2264
BclI	TGATCA	1 cut(s)	1278
BcnI	CCSGG	2 cut(s)	137, 1781
BcoDI	GTCTC	2 cut(s)	568, 960
BfaI	CTAG	6 cut(s)	23, 1509, 1635, 1851, 2394, 2408
BfmI	CTRYAG	1 cut(s)	2482
BfrI	CTTAAG	1 cut(s)	2549
BglII	AGATCT	1 cut(s)	2298
Bme1390I	CCNGG	4 cut(s)	137, 1359, 1781, 2264
Bme18I	GGWCC	3 cut(s)	45, 328, 2461
BmeT110I	CYCGRG	2 cut(s)	323, 1097
BmgBI	CACGTC	1 cut(s)	2413
BmgT120I	GGNCC	4 cut(s)	45, 328, 1839, 2461
BmiI	GGNNCC	3 cut(s)	1471, 1785, 2097
BmrFI	CCNGG	4 cut(s)	137, 1359, 1781, 2264
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	8 cut(s)	69, 298, 619, 1378, 1755, 1860, 1942, 2619
BmtI	GCTAGC	1 cut(s)	2397
BmuI	ACTGGG	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	1527, 2008
BpuEI	CTTGAG	2 cut(s)	359, 740
BpuMI	CCSGG	2 cut(s)	137, 1781
Bsa29I	ATCGAT	1 cut(s)	2515
BsaAI	YACGTR	1 cut(s)	2599
BsaHI	GRCGYC	2 cut(s)	360, 684
BsaI	GGTCTC	1 cut(s)	960
BsaJI	CCNNGG	5 cut(s)	141, 309, 520, 1345, 2317
BsaWI	WCCGGW	1 cut(s)	1726
Bsc4I	CCNNNNNNNGG	7 cut(s)	136, 142, 310, 976, 2176, 2269, 2517
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	3 cut(s)	392, 1723, 2029
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	1359, 2264
BseCI	ATCGAT	1 cut(s)	2515
BseDI	CCNNGG	5 cut(s)	141, 309, 520, 1345, 2317
BseGI	GGATG	8 cut(s)	60, 634, 790, 913, 1303, 1957, 2207, 2493
BseLI	CCNNNNNNNGG	7 cut(s)	136, 142, 310, 976, 2176, 2269, 2517
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	810, 1227
BseNI	ACTGG	3 cut(s)	392, 1723, 2029
BsePI	GCGCGC	1 cut(s)	421
BseRI	GAGGAG	6 cut(s)	182, 185, 256, 259, 683, 1115
BseX3I	CGGCCG	2 cut(s)	394, 2194
BseXI	GCAGC	7 cut(s)	268, 271, 601, 1156, 1314, 1885, 2384
BseYI	CCCAGC	2 cut(s)	980, 1823
BsgI	GTGCAG	1 cut(s)	1417
Bsh1236I	CGCG	4 cut(s)	421, 423, 459, 1211
Bsh1285I	CGRYCG	2 cut(s)	397, 2197
BshFI	GGCC	6 cut(s)	140, 342, 396, 830, 1840, 2196
BshVI	ATCGAT	1 cut(s)	2515
BsiEI	CGRYCG	2 cut(s)	397, 2197
BsiHKAI	GWGCWC	3 cut(s)	324, 351, 357
BsiHKCI	CYCGRG	2 cut(s)	323, 1097
BsiSI	CCGG	6 cut(s)	69, 137, 180, 567, 1727, 1780
BslFI	GGGAC	3 cut(s)	457, 630, 932
BslI	CCNNNNNNNGG	7 cut(s)	136, 142, 310, 976, 2176, 2269, 2517
BsmAI	GTCTC	2 cut(s)	568, 960
BsmBI	CGTCTC	1 cut(s)	568
BsmFI	GGGAC	3 cut(s)	457, 630, 932
BsmI	GAATGC	6 cut(s)	609, 661, 742, 1171, 1203, 2236
BsnI	GGCC	6 cut(s)	140, 342, 396, 830, 1840, 2196
Bso31I	GGTCTC	1 cut(s)	960
BsoBI	CYCGRG	2 cut(s)	323, 1097
Bsp1286I	GDGCHC	5 cut(s)	324, 351, 357, 1248, 2511
Bsp1407I	TGTACA	1 cut(s)	2415
Bsp143I	GATC	8 cut(s)	132, 447, 991, 1111, 1278, 1972, 1992, 2298
Bsp68I	TCGCGA	1 cut(s)	1211
BspANI	GGCC	6 cut(s)	140, 342, 396, 830, 1840, 2196
BspCNI	CTCAG	2 cut(s)	811, 1228
BspDI	ATCGAT	1 cut(s)	2515
BspFNI	CGCG	4 cut(s)	421, 423, 459, 1211
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	3 cut(s)	1471, 1785, 2097
BspOI	GCTAGC	1 cut(s)	2397
BspPI	GGATC	2 cut(s)	127, 442
BspTI	CTTAAG	1 cut(s)	2549
BspTNI	GGTCTC	1 cut(s)	960
BsrBI	CCGCTC	1 cut(s)	1450
BsrDI	GCAATG	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	2415
BsrI	ACTGG	3 cut(s)	392, 1723, 2029
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	5 cut(s)	141, 309, 520, 1345, 2317
BssHII	GCGCGC	1 cut(s)	421
BssMI	GATC	8 cut(s)	132, 447, 991, 1111, 1278, 1972, 1992, 2298
BssNI	GRCGYC	2 cut(s)	360, 684
BssSI	CACGAG	2 cut(s)	344, 350
BssT1I	CCWWGG	3 cut(s)	141, 1345, 2317
Bst2BI	CACGAG	2 cut(s)	344, 350
Bst2UI	CCWGG	2 cut(s)	1359, 2264
Bst4CI	ACNGT	3 cut(s)	1156, 1526, 2012
Bst6I	CTCTTC	1 cut(s)	1928
BstACI	GRCGYC	2 cut(s)	360, 684
BstAFI	CTTAAG	1 cut(s)	2549
BstAPI	GCANNNNNTGC	3 cut(s)	778, 2054, 2629
BstAUI	TGTACA	1 cut(s)	2415
BstBAI	YACGTR	1 cut(s)	2599
BstC8I	GCNNGC	8 cut(s)	423, 506, 572, 770, 891, 978, 1830, 2395
BstDEI	CTNAG	8 cut(s)	819, 897, 1236, 2069, 2182, 2279, 2435, 2533
BstDSI	CCRYGG	1 cut(s)	520
BstENI	CCTNNNNNAGG	3 cut(s)	308, 974, 2174
BstF5I	GGATG	8 cut(s)	60, 634, 790, 913, 1303, 1957, 2207, 2493
BstFNI	CGCG	4 cut(s)	421, 423, 459, 1211
BstHHI	GCGC	5 cut(s)	423, 425, 461, 609, 976
BstKTI	GATC	8 cut(s)	135, 450, 994, 1114, 1281, 1975, 1995, 2301
BstMAI	GTCTC	2 cut(s)	568, 960
BstMBI	GATC	8 cut(s)	132, 447, 991, 1111, 1278, 1972, 1992, 2298
BstMCI	CGRYCG	2 cut(s)	397, 2197
BstMWI	GCNNNNNNNGC	9 cut(s)	405, 606, 778, 1299, 1829, 2045, 2054, 2109, 2629
BstNI	CCWGG	2 cut(s)	1359, 2264
BstNSI	RCATGY	1 cut(s)	1832
BstSCI	CCNGG	4 cut(s)	135, 1357, 1779, 2262
BstSFI	CTRYAG	1 cut(s)	2482
BstUI	CGCG	4 cut(s)	421, 423, 459, 1211
BstV1I	GCAGC	7 cut(s)	268, 271, 601, 1156, 1314, 1885, 2384
BstV2I	GAAGAC	2 cut(s)	1527, 2008
BstX2I	RGATCY	2 cut(s)	447, 2298
BstXI	CCANNNNNNTGG	1 cut(s)	1261
BstYI	RGATCY	2 cut(s)	447, 2298
BstZI	CGGCCG	2 cut(s)	394, 2194
Bsu15I	ATCGAT	1 cut(s)	2515
BsuRI	GGCC	6 cut(s)	140, 342, 396, 830, 1840, 2196
BsuTUI	ATCGAT	1 cut(s)	2515
BtgI	CCRYGG	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	2118
BtrI	CACGTC	1 cut(s)	2413
BtsCI	GGATG	8 cut(s)	60, 634, 790, 913, 1303, 1957, 2207, 2493
BtsIMutI	CAGTG	2 cut(s)	11, 2017
BtuMI	TCGCGA	1 cut(s)	1211
Cac8I	GCNNGC	8 cut(s)	423, 506, 572, 770, 891, 978, 1830, 2395
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	5 cut(s)	423, 425, 461, 609, 976
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	45, 328, 1839, 2461
ClaI	ATCGAT	1 cut(s)	2515
CseI	GACGC	2 cut(s)	692, 1967
Csp6I	GTAC	7 cut(s)	1057, 1578, 1658, 2260, 2416, 2537, 2596
CviQI	GTAC	7 cut(s)	1057, 1578, 1658, 2260, 2416, 2537, 2596
DdeI	CTNAG	8 cut(s)	819, 897, 1236, 2069, 2182, 2279, 2435, 2533
DpnI	GATC	8 cut(s)	134, 449, 993, 1113, 1280, 1974, 1994, 2300
DpnII	GATC	8 cut(s)	132, 447, 991, 1111, 1278, 1972, 1992, 2298
EaeI	YGGCCR	4 cut(s)	138, 340, 394, 2194
EagI	CGGCCG	2 cut(s)	394, 2194
Eam1104I	CTCTTC	1 cut(s)	1928
EarI	CTCTTC	1 cut(s)	1928
EciI	GGCGGA	1 cut(s)	806
EclXI	CGGCCG	2 cut(s)	394, 2194
Eco130I	CCWWGG	3 cut(s)	141, 1345, 2317
Eco24I	GRGCYC	2 cut(s)	1248, 2511
Eco31I	GGTCTC	1 cut(s)	960
Eco32I	GATATC	2 cut(s)	1143, 1207
Eco47I	GGWCC	3 cut(s)	45, 328, 2461
Eco52I	CGGCCG	2 cut(s)	394, 2194
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	2 cut(s)	323, 1097
EcoNI	CCTNNNNNAGG	3 cut(s)	308, 974, 2174
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	1357, 2262
EcoRV	GATATC	2 cut(s)	1143, 1207
EcoT14I	CCWWGG	3 cut(s)	141, 1345, 2317
EcoT38I	GRGCYC	2 cut(s)	1248, 2511
ErhI	CCWWGG	3 cut(s)	141, 1345, 2317
Esp3I	CGTCTC	1 cut(s)	568
FalI	AAGNNNNNCTT	4 cut(s)	761, 793, 2532, 2564
FaqI	GGGAC	3 cut(s)	457, 630, 932
FauI	CCCGC	1 cut(s)	1286
FauNDI	CATATG	1 cut(s)	1318
FbaI	TGATCA	1 cut(s)	1278
FokI	GGATG	8 cut(s)	47, 641, 797, 920, 1310, 1964, 2194, 2500
FriOI	GRGCYC	2 cut(s)	1248, 2511
FspBI	CTAG	6 cut(s)	23, 1509, 1635, 1851, 2394, 2408
FspI	TGCGCA	1 cut(s)	975
GlaI	GCGC	5 cut(s)	422, 424, 460, 608, 975
GsaI	CCCAGC	2 cut(s)	984, 1827
HaeIII	GGCC	6 cut(s)	140, 342, 396, 830, 1840, 2196
HapII	CCGG	6 cut(s)	69, 137, 180, 567, 1727, 1780
HgaI	GACGC	2 cut(s)	692, 1967
HhaI	GCGC	5 cut(s)	423, 425, 461, 609, 976
Hin1I	GRCGYC	2 cut(s)	360, 684
Hin6I	GCGC	5 cut(s)	421, 423, 459, 607, 974
HinP1I	GCGC	5 cut(s)	421, 423, 459, 607, 974
HincII	GTYRAC	1 cut(s)	1309
HindII	GTYRAC	1 cut(s)	1309
HindIII	AAGCTT	1 cut(s)	1409
HinfI	GANTC	4 cut(s)	77, 618, 1095, 1453
HpaII	CCGG	6 cut(s)	69, 137, 180, 567, 1727, 1780
HphI	GGTGA	9 cut(s)	58, 88, 863, 1137, 1240, 1634, 1662, 1744, 2368
Hpy166II	GTNNAC	5 cut(s)	1076, 1309, 1940, 2416, 2418
Hpy8I	GTNNAC	5 cut(s)	1076, 1309, 1940, 2416, 2418
Hpy99I	CGWCG	2 cut(s)	362, 686
HpyAV	CCTTC	6 cut(s)	169, 439, 1025, 1123, 1417, 1592
HpyCH4III	ACNGT	3 cut(s)	1156, 1526, 2012
HpyCH4IV	ACGT	4 cut(s)	125, 360, 2412, 2598
HpyF10VI	GCNNNNNNNGC	9 cut(s)	405, 606, 778, 1299, 1829, 2045, 2054, 2109, 2629
HpyF3I	CTNAG	8 cut(s)	819, 897, 1236, 2069, 2182, 2279, 2435, 2533
HpySE526I	ACGT	4 cut(s)	125, 360, 2412, 2598
Hsp92I	GRCGYC	2 cut(s)	360, 684
HspAI	GCGC	5 cut(s)	421, 423, 459, 607, 974
Ksp22I	TGATCA	1 cut(s)	1278
Kzo9I	GATC	8 cut(s)	132, 447, 991, 1111, 1278, 1972, 1992, 2298
LmnI	GCTCC	2 cut(s)	1132, 1820
Lsp1109I	GCAGC	7 cut(s)	268, 271, 601, 1156, 1314, 1885, 2384
LweI	GCATC	8 cut(s)	69, 298, 619, 1378, 1755, 1860, 1942, 2619
MaeI	CTAG	6 cut(s)	23, 1509, 1635, 1851, 2394, 2408
MaeII	ACGT	4 cut(s)	125, 360, 2412, 2598
MaeIII	GTNAC	8 cut(s)	51, 814, 869, 1156, 1349, 1664, 1979, 2490
MalI	GATC	8 cut(s)	134, 449, 993, 1113, 1280, 1974, 1994, 2300
MbiI	CCGCTC	1 cut(s)	1450
MboI	GATC	8 cut(s)	132, 447, 991, 1111, 1278, 1972, 1992, 2298
MfeI	CAATTG	1 cut(s)	2129
MflI	RGATCY	2 cut(s)	447, 2298
MhlI	GDGCHC	5 cut(s)	324, 351, 357, 1248, 2511
MluCI	AATT	9 cut(s)	87, 1225, 1698, 1745, 1894, 2129, 2308, 2388, 2425
MlyI	GAGTC	2 cut(s)	612, 1089
MmeI	TCCRAC	3 cut(s)	255, 297, 1101
MroXI	GAANNNNTTC	3 cut(s)	407, 677, 1964
MseI	TTAA	6 cut(s)	1548, 1613, 2061, 2175, 2550, 2641
MslI	CAYNNNNRTG	1 cut(s)	2469
MspA1I	CMGCKG	1 cut(s)	592
MspCI	CTTAAG	1 cut(s)	2549
MspI	CCGG	6 cut(s)	69, 137, 180, 567, 1727, 1780
MspR9I	CCNGG	4 cut(s)	137, 1359, 1781, 2264
MunI	CAATTG	1 cut(s)	2129
Mva1269I	GAATGC	6 cut(s)	609, 661, 742, 1171, 1203, 2236
MvaI	CCWGG	2 cut(s)	1359, 2264
MvnI	CGCG	4 cut(s)	421, 423, 459, 1211
MwoI	GCNNNNNNNGC	9 cut(s)	405, 606, 778, 1299, 1829, 2045, 2054, 2109, 2629
NciI	CCSGG	2 cut(s)	137, 1781
NdeI	CATATG	1 cut(s)	1318
NdeII	GATC	8 cut(s)	132, 447, 991, 1111, 1278, 1972, 1992, 2298
NheI	GCTAGC	1 cut(s)	2393
NlaIV	GGNNCC	3 cut(s)	1471, 1785, 2097
NmeAIII	GCCGAG	1 cut(s)	1488
NmuCI	GTSAC	7 cut(s)	51, 814, 869, 1156, 1664, 1979, 2490
NruI	TCGCGA	1 cut(s)	1211
NsbI	TGCGCA	1 cut(s)	975
NspI	RCATGY	1 cut(s)	1832
PaeI	GCATGC	1 cut(s)	1832
PaeR7I	CTCGAG	2 cut(s)	323, 1097
PagI	TCATGA	1 cut(s)	535
PauI	GCGCGC	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 522
PctI	GAATGC	6 cut(s)	609, 661, 742, 1171, 1203, 2236
PdmI	GAANNNNTTC	3 cut(s)	407, 677, 1964
PfeI	GAWTC	2 cut(s)	77, 1453
PflFI	GACNNNGTC	3 cut(s)	49, 149, 389
PflMI	CCANNNNNTGG	1 cut(s)	2517
PleI	GAGTC	2 cut(s)	612, 1089
PpsI	GAGTC	2 cut(s)	612, 1089
Ppu21I	YACGTR	1 cut(s)	2599
PpuMI	RGGWCCY	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	1357, 2262
PspFI	CCCAGC	2 cut(s)	980, 1823
PspGI	CCWGG	2 cut(s)	1357, 2262
PspN4I	GGNNCC	3 cut(s)	1471, 1785, 2097
PspPI	GGNCC	4 cut(s)	45, 328, 1839, 2461
PspPPI	RGGWCCY	1 cut(s)	328
PspXI	VCTCGAGB	2 cut(s)	323, 1097
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
PsuI	RGATCY	2 cut(s)	447, 2298
PsyI	GACNNNGTC	3 cut(s)	49, 149, 389
PteI	GCGCGC	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	592
RruI	TCGCGA	1 cut(s)	1211
RsaI	GTAC	7 cut(s)	1058, 1579, 1659, 2261, 2417, 2538, 2597
RsaNI	GTAC	7 cut(s)	1057, 1578, 1658, 2260, 2416, 2537, 2596
RseI	CAYNNNNRTG	1 cut(s)	2469
SaqAI	TTAA	6 cut(s)	1548, 1613, 2061, 2175, 2550, 2641
Sau3AI	GATC	8 cut(s)	132, 447, 991, 1111, 1278, 1972, 1992, 2298
Sau96I	GGNCC	4 cut(s)	45, 328, 1839, 2461
SchI	GAGTC	2 cut(s)	612, 1089
ScrFI	CCNGG	4 cut(s)	137, 1359, 1781, 2264
SduI	GDGCHC	5 cut(s)	324, 351, 357, 1248, 2511
SfaNI	GCATC	8 cut(s)	69, 298, 619, 1378, 1755, 1860, 1942, 2619
SfcI	CTRYAG	1 cut(s)	2482
Sfr274I	CTCGAG	2 cut(s)	323, 1097
SinI	GGWCC	3 cut(s)	45, 328, 2461
SlaI	CTCGAG	2 cut(s)	323, 1097
SmiMI	CAYNNNNRTG	1 cut(s)	2469
SmlI	CTYRAG	5 cut(s)	323, 374, 755, 1097, 2549
SmoI	CTYRAG	5 cut(s)	323, 374, 755, 1097, 2549
SphI	GCATGC	1 cut(s)	1832
Sse9I	AATT	9 cut(s)	87, 1225, 1698, 1745, 1894, 2129, 2308, 2388, 2425
SspMI	CTAG	6 cut(s)	23, 1509, 1635, 1851, 2394, 2408
StyD4I	CCNGG	4 cut(s)	135, 1357, 1779, 2262
StyI	CCWWGG	3 cut(s)	141, 1345, 2317
TaaI	ACNGT	3 cut(s)	1156, 1526, 2012
TaiI	ACGT	4 cut(s)	128, 363, 2415, 2601
TasI	AATT	9 cut(s)	87, 1225, 1698, 1745, 1894, 2129, 2308, 2388, 2425
TatI	WGTACW	4 cut(s)	1577, 1657, 2415, 2536
TauI	GCSGC	4 cut(s)	107, 399, 1634, 2199
TfiI	GAWTC	2 cut(s)	77, 1453
Tru1I	TTAA	6 cut(s)	1548, 1613, 2061, 2175, 2550, 2641
Tru9I	TTAA	6 cut(s)	1548, 1613, 2061, 2175, 2550, 2641
TscAI	CASTG	2 cut(s)	18, 2017
TseFI	GTSAC	7 cut(s)	51, 814, 869, 1156, 1664, 1979, 2490
TseI	GCWGC	7 cut(s)	256, 259, 589, 1169, 1302, 1873, 2397
Tsp45I	GTSAC	7 cut(s)	51, 814, 869, 1156, 1664, 1979, 2490
TspDTI	ATGAA	8 cut(s)	524, 747, 1142, 1178, 1436, 1477, 1801, 2541
TspGWI	ACGGA	2 cut(s)	736, 2103
TspRI	CASTG	2 cut(s)	18, 2017
Tth111I	GACNNNGTC	3 cut(s)	49, 149, 389
Van91I	CCANNNNNTGG	1 cut(s)	2517
Vha464I	CTTAAG	1 cut(s)	2549
VpaK11BI	GGWCC	3 cut(s)	45, 328, 2461
XagI	CCTNNNNNAGG	3 cut(s)	308, 974, 2174
XceI	RCATGY	1 cut(s)	1832
XhoI	CTCGAG	2 cut(s)	323, 1097
XmnI	GAANNNNTTC	3 cut(s)	407, 677, 1964
XspI	CTAG	6 cut(s)	23, 1509, 1635, 1851, 2394, 2408
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.