Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

22084076 .. 22085581

Gene Structure 1506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTTCGTTATTTAAGGACCAATCAAAGCTGTCGCAGTACCGGGATAGAAGGTTTCCGGGGTCACAAGAGGAGTTTGAACAAGCACTCTTGGCATCAACAACTGTTTACATTGGGAATATGTCCTTCTACACGACAGAAGAGCAAGTTTACGAGCTCTTCTCTCGCGCCGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACCAAAACCCCTTGTGGTTTTTGTTTTGTCCTATACTATTCTCGAGAGGATACTGAGGATGCTGTAAAGTATATTAGCGGGACTATTCTTGATGATCGCCCTATTCGTGTGGATTTTGATTGGGGATTTCAAGAGGGAAGGCAATGGGGTCGTGGGCGAAGTGGTGGACAGGTGCGCGATGAGTATCGTACTGATTATGATCCTGATATCCTTTTGATTAGTTTGGAATGTCTGGAAAAGCTTTCTTTAGTATGGTTTATAAATTATAGTGTTGCTTGTTCCTCTGAGATTAAAAGTGGTGCCAAGCTTTTATTTTTCTTGCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

180

Amino Acids

20.74

Weight (kDa)

4.93

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	1.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	509
AccII	CGCG	2 cut(s)	168, 387
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	404
AfaI	GTAC	2 cut(s)	41, 400
AgsI	TTSAA	2 cut(s)	80, 341
AluBI	AGCT	4 cut(s)	31, 157, 451, 517
AluI	AGCT	4 cut(s)	31, 157, 451, 517
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	170, 387
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	2 cut(s)	44, 60
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	44, 60
BfaI	CTAG	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	44, 60
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	44, 60
BmsI	GCATC	2 cut(s)	104, 259
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpuMI	CCSGG	2 cut(s)	44, 60
BsaBI	GATNNNNATC	2 cut(s)	393, 408
BsaJI	CCNNGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	393, 408
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	2 cut(s)	393, 408
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	255, 486
BseRI	GAGGAG	1 cut(s)	86
Bsh1236I	CGCG	2 cut(s)	168, 387
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	43, 59, 171
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	304, 409
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	256, 487
BspFNI	CGCG	2 cut(s)	168, 387
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	2 cut(s)	135, 164
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	304, 409
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	135, 164
BstDEI	CTNAG	2 cut(s)	264, 495
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	2 cut(s)	168, 387
BstHHI	GCGC	2 cut(s)	170, 387
BstKTI	GATC	2 cut(s)	307, 412
BstMBI	GATC	2 cut(s)	304, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	42, 58
BstUI	CGCG	2 cut(s)	168, 387
BsuI	GTATCC	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	274
CfoI	GCGC	2 cut(s)	170, 387
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	40, 399
CviJI	RGCY	6 cut(s)	5, 31, 157, 198, 451, 517
CviKI_1	RGCY	6 cut(s)	5, 31, 157, 198, 451, 517
CviQI	GTAC	2 cut(s)	40, 399
DdeI	CTNAG	2 cut(s)	264, 495
DpnI	GATC	2 cut(s)	306, 411
DpnII	GATC	2 cut(s)	304, 409
Eam1104I	CTCTTC	2 cut(s)	135, 164
EarI	CTCTTC	2 cut(s)	135, 164
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	159
FaiI	YATR	8 cut(s)	122, 194, 244, 282, 408, 463, 470, 477
FaqI	GGGAC	1 cut(s)	304
FauI	CCCGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	538
GlaI	GCGC	2 cut(s)	169, 386
HapII	CCGG	3 cut(s)	43, 59, 171
HhaI	GCGC	2 cut(s)	170, 387
Hin6I	GCGC	2 cut(s)	168, 385
HinP1I	GCGC	2 cut(s)	168, 385
HindIII	AAGCTT	2 cut(s)	449, 515
HpaII	CCGG	3 cut(s)	43, 59, 171
Hpy166II	GTNNAC	3 cut(s)	109, 151, 377
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	6 cut(s)	252, 254, 299, 341, 413, 443
Hpy8I	GTNNAC	3 cut(s)	109, 151, 377
HpyAV	CCTTC	3 cut(s)	45, 136, 342
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	264, 495
HspAI	GCGC	2 cut(s)	168, 385
Kzo9I	GATC	2 cut(s)	304, 409
LguI	GCTCTTC	2 cut(s)	135, 164
LpnPI	CCDG	6 cut(s)	56, 72, 184, 365, 426, 428
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	2 cut(s)	306, 411
MboI	GATC	2 cut(s)	304, 409
MboII	GAAGA	3 cut(s)	151, 152, 196
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	177, 189, 472
MnlI	CCTC	5 cut(s)	64, 250, 259, 337, 502
MseI	TTAA	3 cut(s)	15, 180, 501
MspI	CCGG	3 cut(s)	43, 59, 171
MspR9I	CCNGG	2 cut(s)	44, 60
MvnI	CGCG	2 cut(s)	168, 387
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	2 cut(s)	44, 60
NdeII	GATC	2 cut(s)	304, 409
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	252
PciSI	GCTCTTC	2 cut(s)	135, 164
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	2 cut(s)	41, 400
RsaNI	GTAC	2 cut(s)	40, 399
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	2 cut(s)	135, 164
SaqAI	TTAA	3 cut(s)	15, 180, 501
Sau3AI	GATC	2 cut(s)	304, 409
Sau96I	GGNCC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	44, 60
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	33, 56, 159, 384, 453, 519
SfaNI	GCATC	2 cut(s)	104, 259
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	177, 189, 472
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	1 cut(s)	538
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	42, 58
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	177, 189, 472
Tru1I	TTAA	3 cut(s)	15, 180, 501
Tru9I	TTAA	3 cut(s)	15, 180, 501
TseFI	GTSAC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	19
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.