pycom17g24500

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
22803529 .. 22805196
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1668 bp
ATGATGGGTTACTTTGATTATGCCTTGCTGTTTTACTTTAAGATGCTGAGTTCTGGAGTTTCACCTGACAAGTACACTTTTCTGAGTGTAATTAAAGCTTGTGGTGGTGTGAATAATGTAAGATTGGGCAAAGCTGTCTATGATACTATCCAGTTTATGGGTTATGGAGTTGATATATTTTTGGGCAGCTCTTTGATTCGACTGTATGTGGACAATGGTTGTATTCAGGACGCATGGAGCTTGTTTGTGAAAATGCCTGTCAAAGATTGTGTTTTATGGAATGTTATGCTTCATGGTTATGTTAAAAATGGAGAGTTAAATAATTCTGTTAGAATGTTCTTGGAAATGAGAAGTAGTGACGTTAAGCCAAATGCAGTGACGTTCGCTTGCATTTTGTCTCTTTGTGCTTCAGAAGCTATGATTGGTTTTGGTACTCAACTCCATGGGCTTGTTGTTGCATGTGGGTTGGAGTCGGATTCTCCAGTAGCTAATACATTGTTAGCAATGTATTCTAAATGCCAATGCTTCTCTGATGCCCGCAAGTTGTTTGATATGATGCCTCGCACTGATTTAGTGACATGGAATGGAATGATATCTGGTTATATACAAAGTGGGTTTATGCTTGAGGCTTCACGTTTGTTTCAGGACATGATATCTACAAGTGTCAAACCTGATTCGATCACATTTGCAAGTTTTTTACCTTCGGTTGCTGAACTAGGTAGCCTCAAGCAAGGTAAGGAAATTCACGGTTACATTGTAAGGCACTGCGTGCCTTTGGATGTGTTTTTGCAATGTGCACTTATTGATGTATACTTCAAGTGCAGGAATGTGGACATGGCACGTAAAATTTTCAGCAAAAGCACCAGAACGGATGTTGTCATCTGCACAGCTATGATTTCAGGGTTTGTTCTCAATGGGATGAATTGTGATGCATTGGAAATTTTTAGAAGGTTACTTAAAGAGAAAATGAGACCGAATTCTCTAACACTGGCAAGTGTTCTGCCAGCTTGTGCTGGTCTGGCTGCTCTGAAATTTGGAAAAGAATTGCATGGAAACATCCTTAAGCATGGGCTTGATGCAAGGTGTTATGTGGGTAGTGCCCTTACAGACATGTATGCAAAATCTGGAAGGCTCGATCTTGCTCATCGAGTTTTTCAAAGACTGTCTGAAAGGGATGCTGTTTGTTGGAACTCGATGATAACAAGCTATTCCCAGAATGGCAAACCGGAAGAGGCGATAGATCTATTTCGTCAAATGGGGACGGAAGGTGCCAAGTATGACTGTGTTAGCATTTCAGCTGTGCTTTCTGCTTGTGCAAACTTACCAGCACTTCATTATGGGAAAGAGATCGATCGTTTCATGATTAGAAGTGCATTTAGTTCCGATCTATTTGCTGAGAGTGCACTGATAGACATGTATGCCAAATGTGGAAACTTAGATCTTGCTTGCCGTGTGTTTGACATGATGGAAGAGAAGAATGAAGTTTCCTGGAACAGCATCATTTCTGCTTATGGGAATCATGGTCGCCTTAAGGAATCTCTTGTTCTGTTTCATGAAATGTTGAGTAAAGGGATCGATTGCCTGATCATGTCACCTTTCTTGGTATCTTATCTGCTTGTGGCCATGCAGGCGCAGTTGATGATGGAATTCTCTACTTCCGTTGTATGA

Protein Analysis

556

Amino Acids

61.68

Weight (kDa)

7.07

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 89 - 136 9.9e-11 PPR repeat family
PPR PF01535 91 - 120 8e-06 PPR repeat
PPR_2 PF13041 190 - 232 2.8e-09 PPR repeat family
PPR PF01535 192 - 219 1.3e-06 PPR repeat
PPR_2 PF13041 392 - 440 1.5e-10 PPR repeat family
PPR PF01535 394 - 423 4.5e-09 PPR repeat
PPR_2 PF13041 493 - 526 3.4e-07 PPR repeat family
PPR PF01535 495 - 525 1.3e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1268
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 810
AciI CCGC 1 cut(s) 538
AclWI GGATC 1 cut(s) 1580
AcoI YGGCCR 1 cut(s) 1620
AcsI RAATTY 6 cut(s) 741, 846, 939, 976, 1031, 1646
AcuI CTGAAG 1 cut(s) 393
AdeI CACNNNGTG 1 cut(s) 769
AfaI GTAC 2 cut(s) 74, 433
AfiI CCNNNNNNNGG 1 cut(s) 157
AflII CTTAAG 2 cut(s) 1061, 1529
AflIII ACRYGT 2 cut(s) 1110, 1413
AgsI TTSAA 2 cut(s) 817, 1157
AjnI CCWGG 1 cut(s) 1487
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
Alw21I GWGCWC 2 cut(s) 799, 1405
Alw26I GTCTC 2 cut(s) 402, 964
Alw44I GTGCAC 2 cut(s) 795, 1401
AlwI GGATC 1 cut(s) 1580
AoxI GGCC 1 cut(s) 1620
ApaLI GTGCAC 2 cut(s) 795, 1401
ApeKI GCWGC 2 cut(s) 186, 1022
ApoI RAATTY 6 cut(s) 741, 846, 939, 976, 1031, 1646
AspLEI GCGC 1 cut(s) 1633
AsuHPI GGTGA 2 cut(s) 54, 1584
BaeGI GKGCMC 3 cut(s) 799, 1102, 1405
BalI TGGCCA 1 cut(s) 1622
BanI GGYRCC 1 cut(s) 1268
Bbv12I GWGCWC 2 cut(s) 799, 1405
BbvI GCAGC 2 cut(s) 198, 1009
BccI CCATC 2 cut(s) 1459, 1636
BceAI ACGGC 1 cut(s) 1434
BcgI CGANNNNNNTGC 2 cut(s) 1373, 1407
BciT130I CCWGG 1 cut(s) 1489
BclI TGATCA 1 cut(s) 1584
BcoDI GTCTC 2 cut(s) 402, 964
BfaI CTAG 1 cut(s) 716
BfrI CTTAAG 2 cut(s) 1061, 1529
BglI GCCNNNNNGGC 1 cut(s) 1628
BglII AGATCT 2 cut(s) 1240, 1438
BisI GCNGC 2 cut(s) 187, 1023
BlsI GCNGC 2 cut(s) 188, 1024
Bme1390I CCNGG 1 cut(s) 1489
BmiI GGNNCC 1 cut(s) 1270
BmrFI CCNGG 1 cut(s) 1489
BmsI GCATC 7 cut(s) 33, 523, 546, 919, 1066, 1165, 1506
BpmI CTGGAG 2 cut(s) 75, 465
BpuEI CTTGAG 2 cut(s) 644, 710
Bsa29I ATCGAT 2 cut(s) 1350, 1575
BsaAI YACGTR 1 cut(s) 842
BsaI GGTCTC 1 cut(s) 964
BsaJI CCNNGG 1 cut(s) 442
BsaWI WCCGGW 1 cut(s) 1225
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 151, 482, 993
Bse3DI GCAATG 2 cut(s) 510, 797
BseBI CCWGG 1 cut(s) 1489
BseCI ATCGAT 2 cut(s) 1350, 1575
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 5 cut(s) 784, 877, 924, 1056, 1180
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 2 cut(s) 510, 797
BseMII CTCAG 3 cut(s) 38, 74, 1386
BseNI ACTGG 3 cut(s) 151, 482, 993
BseSI GKGCMC 3 cut(s) 799, 1102, 1405
BseXI GCAGC 2 cut(s) 198, 1009
BsgI GTGCAG 2 cut(s) 841, 868
Bsh1285I CGRYCG 1 cut(s) 1354
BshFI GGCC 1 cut(s) 1622
BshNI GGYRCC 1 cut(s) 1268
BshVI ATCGAT 2 cut(s) 1350, 1575
BsiEI CGRYCG 1 cut(s) 1354
BsiHKAI GWGCWC 2 cut(s) 799, 1405
BsiSI CCGG 1 cut(s) 1226
BslFI GGGAC 1 cut(s) 1273
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 2 cut(s) 402, 964
BsmFI GGGAC 1 cut(s) 1273
BsnI GGCC 1 cut(s) 1622
Bso31I GGTCTC 1 cut(s) 964
Bsp1286I GDGCHC 3 cut(s) 799, 1102, 1405
Bsp143I GATC 9 cut(s) 678, 1135, 1240, 1347, 1351, 1384, 1438, 1572, 1584
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 1 cut(s) 538
BspANI GGCC 1 cut(s) 1622
BspCNI CTCAG 3 cut(s) 39, 75, 1387
BspDI ATCGAT 2 cut(s) 1350, 1575
BspHI TCATGA 2 cut(s) 1359, 1552
BspLI GGNNCC 1 cut(s) 1270
BspPI GGATC 1 cut(s) 1580
BspT107I GGYRCC 1 cut(s) 1268
BspTI CTTAAG 2 cut(s) 1061, 1529
BspTNI GGTCTC 1 cut(s) 964
BsrDI GCAATG 2 cut(s) 510, 797
BsrI ACTGG 3 cut(s) 151, 482, 993
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 9 cut(s) 678, 1135, 1240, 1347, 1351, 1384, 1438, 1572, 1584
BssNAI GTATAC 1 cut(s) 811
BssT1I CCWWGG 1 cut(s) 442
Bst1107I GTATAC 1 cut(s) 811
Bst2UI CCWGG 1 cut(s) 1489
Bst4CI ACNGT 4 cut(s) 204, 749, 1164, 1283
Bst6I CTCTTC 2 cut(s) 1224, 1464
BstAFI CTTAAG 2 cut(s) 1061, 1529
BstAPI GCANNNNNTGC 1 cut(s) 769
BstBAI YACGTR 1 cut(s) 842
BstC8I GCNNGC 6 cut(s) 388, 538, 770, 1005, 1447, 1629
BstDEI CTNAG 4 cut(s) 47, 83, 1395, 1435
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 5 cut(s) 784, 877, 924, 1056, 1180
BstHHI GCGC 1 cut(s) 1633
BstKTI GATC 9 cut(s) 681, 1138, 1243, 1350, 1354, 1387, 1441, 1575, 1587
BstMAI GTCTC 2 cut(s) 402, 964
BstMBI GATC 9 cut(s) 678, 1135, 1240, 1347, 1351, 1384, 1438, 1572, 1584
BstMCI CGRYCG 1 cut(s) 1354
BstMWI GCNNNNNNNGC 5 cut(s) 413, 769, 1019, 1400, 1628
BstNI CCWGG 1 cut(s) 1489
BstNSI RCATGY 3 cut(s) 462, 1114, 1417
BstSCI CCNGG 1 cut(s) 1487
BstSLI GKGCMC 3 cut(s) 799, 1102, 1405
BstV1I GCAGC 2 cut(s) 198, 1009
BstX2I RGATCY 2 cut(s) 1240, 1438
BstYI RGATCY 2 cut(s) 1240, 1438
BstZ17I GTATAC 1 cut(s) 811
Bsu15I ATCGAT 2 cut(s) 1350, 1575
BsuRI GGCC 1 cut(s) 1622
BsuTUI ATCGAT 2 cut(s) 1350, 1575
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 5 cut(s) 784, 877, 924, 1056, 1180
BtsI GCAGTG 2 cut(s) 381, 763
BtsIMutI CAGTG 5 cut(s) 381, 564, 763, 986, 1403
Cac8I GCNNGC 6 cut(s) 388, 538, 770, 1005, 1447, 1629
CciI TCATGA 2 cut(s) 1359, 1552
CfoI GCGC 1 cut(s) 1633
ClaI ATCGAT 2 cut(s) 1350, 1575
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 73, 432
CviQI GTAC 2 cut(s) 73, 432
DdeI CTNAG 4 cut(s) 47, 83, 1395, 1435
DpnI GATC 9 cut(s) 680, 1137, 1242, 1349, 1353, 1386, 1440, 1574, 1586
DpnII GATC 9 cut(s) 678, 1135, 1240, 1347, 1351, 1384, 1438, 1572, 1584
DraIII CACNNNGTG 1 cut(s) 769
EaeI YGGCCR 1 cut(s) 1620
Eam1104I CTCTTC 2 cut(s) 1224, 1464
EarI CTCTTC 2 cut(s) 1224, 1464
Eco130I CCWWGG 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 964
Eco32I GATATC 2 cut(s) 594, 654
Eco57I CTGAAG 1 cut(s) 393
EcoRI GAATTC 2 cut(s) 976, 1646
EcoRII CCWGG 1 cut(s) 1487
EcoRV GATATC 2 cut(s) 594, 654
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 934
ErhI CCWWGG 1 cut(s) 442
FaqI GGGAC 1 cut(s) 1273
FauI CCCGC 1 cut(s) 545
FbaI TGATCA 1 cut(s) 1584
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 2 cut(s) 187, 1023
FokI GGATG 5 cut(s) 791, 884, 931, 1043, 1187
Fsp4HI GCNGC 2 cut(s) 187, 1023
FspBI CTAG 1 cut(s) 716
GlaI GCGC 1 cut(s) 1632
GluI GCNGC 2 cut(s) 187, 1023
GsuI CTGGAG 2 cut(s) 75, 465
HaeIII GGCC 1 cut(s) 1622
HapII CCGG 1 cut(s) 1226
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 1633
Hin6I GCGC 1 cut(s) 1631
HinP1I GCGC 1 cut(s) 1631
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 6 cut(s) 196, 470, 476, 674, 1516, 1535
HpaII CCGG 1 cut(s) 1226
HphI GGTGA 2 cut(s) 54, 1584
Hpy166II GTNNAC 6 cut(s) 75, 211, 797, 811, 832, 1403
Hpy188I TCNGA 7 cut(s) 84, 412, 475, 532, 1029, 1168, 1384
Hpy188III TCNNGA 6 cut(s) 54, 227, 644, 1125, 1360, 1553
Hpy8I GTNNAC 6 cut(s) 75, 211, 797, 811, 832, 1403
HpyAV CCTTC 4 cut(s) 711, 942, 1122, 1259
HpyCH4III ACNGT 4 cut(s) 204, 749, 1164, 1283
HpyCH4IV ACGT 4 cut(s) 360, 380, 634, 841
HpyF10VI GCNNNNNNNGC 5 cut(s) 413, 769, 1019, 1400, 1628
HpyF3I CTNAG 4 cut(s) 47, 83, 1395, 1435
HpySE526I ACGT 4 cut(s) 360, 380, 634, 841
HspAI GCGC 1 cut(s) 1631
Ksp22I TGATCA 1 cut(s) 1584
Kzo9I GATC 9 cut(s) 678, 1135, 1240, 1347, 1351, 1384, 1438, 1572, 1584
LmnI GCTCC 1 cut(s) 237
Lsp1109I GCAGC 2 cut(s) 198, 1009
LweI GCATC 7 cut(s) 33, 523, 546, 919, 1066, 1165, 1506
MaeI CTAG 1 cut(s) 716
MaeII ACGT 4 cut(s) 360, 380, 634, 841
MaeIII GTNAC 7 cut(s) 8, 356, 376, 574, 749, 951, 1590
MalI GATC 9 cut(s) 680, 1137, 1242, 1349, 1353, 1386, 1440, 1574, 1586
MboI GATC 9 cut(s) 678, 1135, 1240, 1347, 1351, 1384, 1438, 1572, 1584
MboII GAAGA 3 cut(s) 1241, 1481, 1486
MflI RGATCY 2 cut(s) 1240, 1438
MhlI GDGCHC 3 cut(s) 799, 1102, 1405
MlsI TGGCCA 1 cut(s) 1622
MluNI TGGCCA 1 cut(s) 1622
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 3 cut(s) 447, 453, 1166
MnlI CCTC 4 cut(s) 570, 619, 734, 1225
Mox20I TGGCCA 1 cut(s) 1622
Mph1103I ATGCAT 1 cut(s) 934
MscI TGGCCA 1 cut(s) 1622
MseI TTAA 8 cut(s) 39, 93, 303, 317, 363, 957, 1062, 1530
MslI CAYNNNNRTG 2 cut(s) 297, 890
Msp20I TGGCCA 1 cut(s) 1622
MspA1I CMGCKG 1 cut(s) 1298
MspCI CTTAAG 2 cut(s) 1061, 1529
MspI CCGG 1 cut(s) 1226
MspR9I CCNGG 1 cut(s) 1489
MvaI CCWGG 1 cut(s) 1489
MwoI GCNNNNNNNGC 5 cut(s) 413, 769, 1019, 1400, 1628
NcoI CCATGG 1 cut(s) 442
NdeII GATC 9 cut(s) 678, 1135, 1240, 1347, 1351, 1384, 1438, 1572, 1584
NlaIV GGNNCC 1 cut(s) 1270
NmuCI GTSAC 4 cut(s) 356, 376, 574, 1590
NsiI ATGCAT 1 cut(s) 934
NspI RCATGY 3 cut(s) 462, 1114, 1417
PagI TCATGA 2 cut(s) 1359, 1552
PciI ACATGT 2 cut(s) 1110, 1413
PfeI GAWTC 5 cut(s) 196, 476, 674, 1516, 1535
PflMI CCANNNNNTGG 1 cut(s) 157
PfoI TCCNGGA 1 cut(s) 1487
PkrI GCNGC 2 cut(s) 188, 1024
Ple19I CGATCG 1 cut(s) 1354
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
Ppu21I YACGTR 1 cut(s) 842
PscI ACATGT 2 cut(s) 1110, 1413
Psp6I CCWGG 1 cut(s) 1487
PspGI CCWGG 1 cut(s) 1487
PspN4I GGNNCC 1 cut(s) 1270
PsuI RGATCY 2 cut(s) 1240, 1438
PvuI CGATCG 1 cut(s) 1354
PvuII CAGCTG 1 cut(s) 1298
RsaI GTAC 2 cut(s) 74, 433
RsaNI GTAC 2 cut(s) 73, 432
RseI CAYNNNNRTG 2 cut(s) 297, 890
SaqAI TTAA 8 cut(s) 39, 93, 303, 317, 363, 957, 1062, 1530
SatI GCNGC 2 cut(s) 187, 1023
Sau3AI GATC 9 cut(s) 678, 1135, 1240, 1347, 1351, 1384, 1438, 1572, 1584
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 1489
SduI GDGCHC 3 cut(s) 799, 1102, 1405
SfaNI GCATC 7 cut(s) 33, 523, 546, 919, 1066, 1165, 1506
SmiMI CAYNNNNRTG 2 cut(s) 297, 890
SmlI CTYRAG 4 cut(s) 623, 725, 1061, 1529
SmoI CTYRAG 4 cut(s) 623, 725, 1061, 1529
SsiI CCGC 1 cut(s) 538
SspMI CTAG 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 1487
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 4 cut(s) 204, 749, 1164, 1283
TaiI ACGT 4 cut(s) 363, 383, 637, 844
TaqI TCGA 7 cut(s) 199, 677, 1134, 1147, 1193, 1350, 1575
TaqII GACCGA 1 cut(s) 988
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 5 cut(s) 196, 476, 674, 1516, 1535
Tru1I TTAA 8 cut(s) 39, 93, 303, 317, 363, 957, 1062, 1530
Tru9I TTAA 8 cut(s) 39, 93, 303, 317, 363, 957, 1062, 1530
TscAI CASTG 5 cut(s) 381, 571, 770, 993, 1410
TseFI GTSAC 4 cut(s) 356, 376, 574, 1590
TseI GCWGC 2 cut(s) 186, 1022
Tsp45I GTSAC 4 cut(s) 356, 376, 574, 1590
TspDTI ATGAA 7 cut(s) 281, 935, 1322, 1348, 1494, 1541, 1569
TspGWI ACGGA 3 cut(s) 884, 1277, 1648
TspRI CASTG 5 cut(s) 381, 571, 770, 993, 1410
Van91I CCANNNNNTGG 1 cut(s) 157
Vha464I CTTAAG 2 cut(s) 1061, 1529
VneI GTGCAC 2 cut(s) 795, 1401
XapI RAATTY 6 cut(s) 741, 846, 939, 976, 1031, 1646
XceI RCATGY 3 cut(s) 462, 1114, 1417
XmiI GTMKAC 1 cut(s) 810
XspI CTAG 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.