pycom17g24790

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011441
Physical Location & Seq
Forward (+)
23009034 .. 23011870
2837 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g24790.1

Sequence Viewer

Length: 864 bp
ATGGCCAATACAGATATAGCATCACCTGTTCGTGGAAAGACAGATAGATCGGTTGGAATCTTTCATGATGGTCATCATTTGAGCCCTGGGTCTGTTCTTGAAGCTTCATTTTCTTTTAGTAGTCTGGATGATAGCTCAGGGAATAGGTCCGTCTACCCTCACTCAATGGATTACTCTGATGATCAGTTGCAAATGGGTCATGATACTGATAGTGTAGACTCTGCCACTTCAGTGGACAAAAATAAGACTGGCGGTGAGATAATAACTGCTCTTTTCAATAATGTATTGAGGATATTGCATAGCATCGATGCTGGTGGGGAAAGATTGAGTGGAGGCAAGCTCACCCATGCAAATGAAGTTATATTGAATGCTGAACTATTGTTTGGAGATGTGACTCTGCACAATAAGGGGAACATAATGGAAGGTCTTTTCATCAGTCCCTTGCTTCTTGATCTGGAAACTATTGCCGACACCATGATGACAAAATTCTGTTTGTTCAGTAGTTTTGGGGACATCAAGGAACTTGGTGAATTCCTTTTTGACTTTGTCATAGAGTACTTGGACTCAAAATATGGCCGGTGCTGCAATTCCGGATTCAGAGTTTGGAAAAAACTCCCCGTAGGCATGAACCAGAAGTTGATGGTTCAAGAGGTTCGGGAGGAGATTCAGAAGTGGACGGATTTGGCTGGAATGATTCCTGATGAGTTGATAGAATGGGATATGAGTCATTCCCTGGGTAAGTGGACAGATTTTAATACCGAAGCTTTTGAGATCGGTTCTGAAATTGACGGAGACATTCTTCAAAGTTTGCTTGATGAAGTTGTGATCGACTTCTGTCAGTGCCAGCTGCTGGGTTCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 VARLMGL

Protein Analysis

288

Amino Acids

31.85

Weight (kDa)

4.49

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 177 - 273 3.3e-19 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 850
AccI GTMKAC 2 cut(s) 153, 216
AccIII TCCGGA 1 cut(s) 590
AciI CCGC 1 cut(s) 252
AcoI YGGCCR 2 cut(s) 3, 574
AcsI RAATTY 2 cut(s) 485, 530
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 32, 850
AgsI TTSAA 5 cut(s) 101, 277, 367, 647, 803
AjnI CCWGG 2 cut(s) 85, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 5 cut(s) 104, 135, 340, 764, 847
AluI AGCT 5 cut(s) 104, 135, 340, 764, 847
Alw26I GTCTC 1 cut(s) 786
AlwNI CAGNNNCTG 1 cut(s) 850
Aor13HI TCCGGA 1 cut(s) 590
AoxI GGCC 2 cut(s) 3, 574
ApeKI GCWGC 2 cut(s) 582, 847
ApoI RAATTY 2 cut(s) 485, 530
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 4 cut(s) 15, 266, 334, 539
AvaII GGWCC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 569, 834
BccI CCATC 2 cut(s) 62, 634
BciT130I CCWGG 2 cut(s) 87, 734
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 786
BisI GCNGC 2 cut(s) 583, 848
BlsI GCNGC 2 cut(s) 584, 849
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 2 cut(s) 87, 734
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 856
BmrFI CCNGG 2 cut(s) 87, 734
BmsI GCATC 3 cut(s) 29, 298, 312
BoxI GACNNNNGTC 1 cut(s) 834
BplI GAGNNNNNCTC 2 cut(s) 324, 356
Bpu10I CCTNAGC 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 85, 86, 732, 733
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 850
Bse118I RCCGGY 1 cut(s) 576
Bse1I ACTGG 1 cut(s) 253
Bse8I GATNNNNATC 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 590
BseBI CCWGG 2 cut(s) 87, 734
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 4 cut(s) 85, 86, 732, 733
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 32, 850
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 2 cut(s) 569, 834
BseYI CCCAGC 1 cut(s) 850
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 2 cut(s) 5, 576
BshVI ATCGAT 1 cut(s) 306
BsiSI CCGG 2 cut(s) 577, 591
BslFI GGGAC 2 cut(s) 423, 524
BslI CCNNNNNNNGG 2 cut(s) 32, 850
BsmAI GTCTC 1 cut(s) 786
BsmFI GGGAC 2 cut(s) 423, 524
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 2 cut(s) 5, 576
Bsp1286I GDGCHC 1 cut(s) 86
Bsp13I TCCGGA 1 cut(s) 590
Bsp143I GATC 5 cut(s) 47, 181, 451, 771, 825
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 5, 576
BspCNI CTCAG 1 cut(s) 149
BspDI ATCGAT 1 cut(s) 306
BspEI TCCGGA 1 cut(s) 590
BspHI TCATGA 2 cut(s) 64, 199
BspLI GGNNCC 1 cut(s) 856
BsrFI RCCGGY 1 cut(s) 576
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 576
BssECI CCNNGG 4 cut(s) 85, 86, 732, 733
BssMI GATC 5 cut(s) 47, 181, 451, 771, 825
Bst2UI CCWGG 2 cut(s) 87, 734
BstC8I GCNNGC 2 cut(s) 338, 845
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 5 cut(s) 50, 184, 454, 774, 828
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 5 cut(s) 47, 181, 451, 771, 825
BstMWI GCNNNNNNNGC 1 cut(s) 582
BstNI CCWGG 2 cut(s) 87, 734
BstPAI GACNNNNGTC 1 cut(s) 834
BstSCI CCNGG 2 cut(s) 85, 732
BstV1I GCAGC 2 cut(s) 569, 834
BstXI CCANNNNNNTGG 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 2 cut(s) 5, 576
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 237, 845
Cac8I GCNNGC 2 cut(s) 338, 845
CaiI CAGNNNCTG 1 cut(s) 850
CciI TCATGA 2 cut(s) 64, 199
Cfr10I RCCGGY 1 cut(s) 576
Cfr13I GGNCC 1 cut(s) 147
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 1 cut(s) 556
CviAII CATG 5 cut(s) 65, 200, 347, 475, 625
CviJI RGCY 9 cut(s) 5, 84, 104, 135, 340, 576, 686, 764, 847
CviKI_1 RGCY 9 cut(s) 5, 84, 104, 135, 340, 576, 686, 764, 847
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 1 cut(s) 136
DpnI GATC 5 cut(s) 49, 183, 453, 773, 827
DpnII GATC 5 cut(s) 47, 181, 451, 771, 825
EaeI YGGCCR 2 cut(s) 3, 574
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 85, 732
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 5 cut(s) 68, 203, 350, 478, 628
FaqI GGGAC 2 cut(s) 423, 524
FatI CATG 5 cut(s) 64, 199, 346, 474, 624
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 2 cut(s) 153, 216
Fnu4HI GCNGC 2 cut(s) 583, 848
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 583, 848
GluI GCNGC 2 cut(s) 583, 848
GsaI CCCAGC 1 cut(s) 854
HaeIII GGCC 2 cut(s) 5, 576
HapII CCGG 2 cut(s) 577, 591
Hin1II CATG 5 cut(s) 68, 203, 350, 478, 628
HindIII AAGCTT 2 cut(s) 102, 762
HinfI GANTC 8 cut(s) 57, 218, 394, 563, 594, 664, 694, 724
HpaII CCGG 2 cut(s) 577, 591
HphI GGTGA 4 cut(s) 15, 266, 334, 539
Hpy166II GTNNAC 5 cut(s) 154, 217, 235, 675, 744
Hpy188I TCNGA 4 cut(s) 178, 599, 669, 781
Hpy8I GTNNAC 5 cut(s) 154, 217, 235, 675, 744
HpyAV CCTTC 1 cut(s) 416
HpyCH4V TGCA 5 cut(s) 190, 298, 350, 400, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 582
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 5 cut(s) 68, 203, 350, 478, 628
Kpn2I TCCGGA 1 cut(s) 590
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 5 cut(s) 47, 181, 451, 771, 825
Lsp1109I GCAGC 2 cut(s) 569, 834
LweI GCATC 3 cut(s) 29, 298, 312
MaeIII GTNAC 1 cut(s) 391
MalI GATC 5 cut(s) 49, 183, 453, 773, 827
MboI GATC 5 cut(s) 47, 181, 451, 771, 825
MboII GAAGA 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 485, 530, 586, 783
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 212, 388, 557, 733
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 5 cut(s) 168, 282, 326, 643, 652
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 590
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 753
MslI CAYNNNNRTG 3 cut(s) 230, 351, 476
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 2 cut(s) 577, 591
MspR9I CCNGG 2 cut(s) 87, 734
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 2 cut(s) 87, 734
MwoI GCNNNNNNNGC 1 cut(s) 582
NdeII GATC 5 cut(s) 47, 181, 451, 771, 825
NlaIII CATG 5 cut(s) 68, 203, 350, 478, 628
NlaIV GGNNCC 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 230
PagI TCATGA 2 cut(s) 64, 199
PasI CCCWGGG 2 cut(s) 86, 733
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 4 cut(s) 57, 594, 664, 694
PflFI GACNNNGTC 1 cut(s) 545
PflMI CCANNNNNTGG 1 cut(s) 850
PkrI GCNGC 2 cut(s) 584, 849
PleI GAGTC 4 cut(s) 212, 388, 557, 732
PpsI GAGTC 4 cut(s) 212, 388, 557, 732
PshAI GACNNNNGTC 1 cut(s) 834
Psp6I CCWGG 2 cut(s) 85, 732
PspFI CCCAGC 1 cut(s) 850
PspGI CCWGG 2 cut(s) 85, 732
PspN4I GGNNCC 1 cut(s) 856
PspPI GGNCC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 850
PsyI GACNNNGTC 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 3 cut(s) 230, 351, 476
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 2 cut(s) 583, 848
Sau3AI GATC 5 cut(s) 47, 181, 451, 771, 825
Sau96I GGNCC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 4 cut(s) 212, 388, 557, 733
ScrFI CCNGG 2 cut(s) 87, 734
SduI GDGCHC 1 cut(s) 86
SetI ASST 9 cut(s) 28, 106, 137, 149, 342, 427, 654, 766, 849
SfaNI GCATC 3 cut(s) 29, 298, 312
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 3 cut(s) 230, 351, 476
Sse9I AATT 4 cut(s) 485, 530, 586, 783
SsiI CCGC 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 85, 732
TaqI TCGA 2 cut(s) 306, 828
TasI AATT 4 cut(s) 485, 530, 586, 783
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 4 cut(s) 57, 594, 664, 694
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 2 cut(s) 237, 845
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 582, 847
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 6 cut(s) 53, 96, 369, 421, 641, 831
TspGWI ACGGA 3 cut(s) 139, 692, 804
TspRI CASTG 2 cut(s) 237, 845
Tth111I GACNNNGTC 1 cut(s) 545
Van91I CCANNNNNTGG 1 cut(s) 850
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 2 cut(s) 485, 530
XmiI GTMKAC 2 cut(s) 153, 216
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.