Rh2DG344500

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011441
Physical Location & Seq
Reverse (-)
47166570 .. 47167178
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG344500.1

Sequence Viewer

Length: 609 bp
ATGATGATTACTCTTGTCAACAATGTATGTAGGATATTGCATAGCATCAATGCGGATGGGGAGAGAGTGAGAAGAAGGAAGCTGACTCATGCATGTGAAATTATCTTAAATGCTGAACTATTGTTTGGAGATGCAACCATGCATAACATGGATGGAATGAAAGGGTCTTTCATGAGTCCCTTTCTTCGTGATCTGGAAATTATTGCTAGTAGCAGGACGACTAGTTTCAATATGTTTGGTGGTTTGGAGGATATCGAAAAGGGCAGTCAACTGGATGGGTTATTTTTTGACTGTGTTATAGAGTATATAGACTCGAAGTATGCCTGGTACTGTAACGCAGGGTTCAGATATTGGAAAGAGCTGCCTTTAAGCATGAACCAGAAATTGATATTTCAAGAGGTTGAAGAGGAAATTAAGAAATGGACACGCTTGTCTGGAATGATTTCTGATGAGATTGTGGCTTGGGAGATGAGTCATTCGTTCAGGAAATGGACAGAGTTTGACATCGAGGCTTTTGAGGCTGGATCTGAAATTGACGGAGACATTTTTCAAACTTTGGTCAATGAGGTTGCGATAGACCTGTGGGAGTGCAGCATTGGCTCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 VARLMGL

Protein Analysis

202

Amino Acids

23.34

Weight (kDa)

4.66

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 34 - 189 2.4e-17 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 430
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 532
AfaI GTAC 1 cut(s) 329
AgsI TTSAA 4 cut(s) 229, 395, 404, 551
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 82, 361
AluI AGCT 2 cut(s) 82, 361
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 361, 591
Asp700I GAANNNNTTC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 348, 603
BccI CCATC 3 cut(s) 50, 146, 269
BciT130I CCWGG 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 534
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 2 cut(s) 207, 222
BisI GCNGC 2 cut(s) 362, 592
BlsI GCNGC 2 cut(s) 363, 593
Bme1390I CCNGG 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 2 cut(s) 54, 121
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 325
BseGI GGATG 3 cut(s) 61, 157, 280
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 348, 603
BslFI GGGAC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 190, 524
BspACI CCGC 1 cut(s) 53
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 601
BspPI GGATC 1 cut(s) 532
BsrI ACTGG 1 cut(s) 276
BssMI GATC 2 cut(s) 190, 524
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 293, 332
Bst6I CTCTTC 1 cut(s) 399
BstF5I GGATG 3 cut(s) 61, 157, 280
BstKTI GATC 2 cut(s) 193, 527
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 2 cut(s) 190, 524
BstMWI GCNNNNNNNGC 2 cut(s) 518, 597
BstNI CCWGG 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 348, 603
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BtsCI GGATG 3 cut(s) 61, 157, 280
CciI TCATGA 1 cut(s) 171
Csp6I GTAC 1 cut(s) 328
CviAII CATG 6 cut(s) 89, 93, 139, 148, 172, 373
CviJI RGCY 6 cut(s) 82, 361, 461, 512, 521, 600
CviKI_1 RGCY 6 cut(s) 82, 361, 461, 512, 521, 600
CviQI GTAC 1 cut(s) 328
DpnI GATC 2 cut(s) 192, 526
DpnII GATC 2 cut(s) 190, 524
DrdI GACNNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 323
EcoRV GATATC 1 cut(s) 253
EcoT22I ATGCAT 2 cut(s) 94, 144
FaeI CATG 6 cut(s) 92, 96, 142, 151, 175, 376
FaqI GGGAC 1 cut(s) 162
FatI CATG 6 cut(s) 88, 92, 138, 147, 171, 372
Fnu4HI GCNGC 2 cut(s) 362, 592
FokI GGATG 3 cut(s) 68, 164, 287
Fsp4HI GCNGC 2 cut(s) 362, 592
FspBI CTAG 2 cut(s) 207, 222
GluI GCNGC 2 cut(s) 362, 592
Hin1II CATG 6 cut(s) 92, 96, 142, 151, 175, 376
HincII GTYRAC 2 cut(s) 19, 269
HindII GTYRAC 2 cut(s) 19, 269
HinfI GANTC 4 cut(s) 85, 175, 311, 472
Hpy166II GTNNAC 2 cut(s) 19, 269
Hpy188I TCNGA 3 cut(s) 347, 448, 529
Hpy188III TCNNGA 6 cut(s) 172, 188, 194, 395, 435, 484
Hpy8I GTNNAC 2 cut(s) 19, 269
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 2 cut(s) 293, 332
HpyCH4V TGCA 5 cut(s) 40, 92, 134, 142, 591
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 597
Hsp92II CATG 6 cut(s) 92, 96, 142, 151, 175, 376
Kzo9I GATC 2 cut(s) 190, 524
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 2 cut(s) 348, 603
LweI GCATC 2 cut(s) 54, 121
MaeI CTAG 2 cut(s) 207, 222
MaeIII GTNAC 1 cut(s) 332
MalI GATC 2 cut(s) 192, 526
MboI GATC 2 cut(s) 190, 524
MboII GAAGA 3 cut(s) 84, 176, 416
MflI RGATCY 1 cut(s) 524
MluCI AATT 5 cut(s) 99, 198, 383, 411, 531
MlyI GAGTC 4 cut(s) 79, 184, 305, 481
MnlI CCTC 6 cut(s) 241, 391, 400, 502, 511, 559
Mph1103I ATGCAT 2 cut(s) 94, 144
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 3 cut(s) 107, 368, 414
MslI CAYNNNNRTG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 518, 597
NdeII GATC 2 cut(s) 190, 524
NlaIII CATG 6 cut(s) 92, 96, 142, 151, 175, 376
NlaIV GGNNCC 1 cut(s) 601
NsiI ATGCAT 2 cut(s) 94, 144
NspI RCATGY 1 cut(s) 96
PagI TCATGA 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 442
PkrI GCNGC 2 cut(s) 363, 593
PleI GAGTC 4 cut(s) 79, 183, 305, 480
PpsI GAGTC 4 cut(s) 79, 183, 305, 480
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 601
PsuI RGATCY 1 cut(s) 524
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 3 cut(s) 107, 368, 414
SatI GCNGC 2 cut(s) 362, 592
Sau3AI GATC 2 cut(s) 190, 524
SchI GAGTC 4 cut(s) 79, 184, 305, 481
ScrFI CCNGG 1 cut(s) 325
SetI ASST 5 cut(s) 84, 363, 402, 570, 582
SfaNI GCATC 2 cut(s) 54, 121
SmiMI CAYNNNNRTG 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 5 cut(s) 99, 198, 383, 411, 531
SsiI CCGC 1 cut(s) 53
SspMI CTAG 2 cut(s) 207, 222
StyD4I CCNGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 293, 332
TaqI TCGA 3 cut(s) 255, 314, 507
TasI AATT 5 cut(s) 99, 198, 383, 411, 531
Tru1I TTAA 3 cut(s) 107, 368, 414
Tru9I TTAA 3 cut(s) 107, 368, 414
TseI GCWGC 2 cut(s) 361, 591
TspDTI ATGAA 3 cut(s) 160, 173, 389
TspGWI ACGGA 1 cut(s) 552
XceI RCATGY 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 2 cut(s) 207, 222
Zsp2I ATGCAT 2 cut(s) 94, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.