Rroxscaffold_2G00117460

DUF761-associated sequence motif

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
45340437 .. 45348636
8200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117460.1

Sequence Viewer

Length: 3594 bp
ATGGAGAAGAATGTTGAAAGAAGAGAGAAGACAAGCTTTTCAATACATCTCCTAGAGAGACTCTTGAGAATTCTAAAAGACTCACTAAAATATGGGTTTCTGCCGTCCCATTGTCTCTCTAGTTATGTTGCTGATGGTTTGGGGTTAATGGAGCAATACTCAATAGTTGGGAGACTTGATAGTATTGAGAAGGAGAAGAGATGTGGTTTTAGCAACATATTTACAGCTTCTGATGATACCATTTTTTCTGTCTTAAGCTGGAATCTTGGAAGGTCCAATTTCATAATGGTTGAGGGTATCCAGGTTCATGCAAATGAGGGTGGGGCGACACAAACACGTGGTGATCTAGGTTCATCATTTTGGGGAATGGCATTGATACTTGCGTCAACAAATCTCCTTACTGCTAGAATTGCTGCTGGTTGTTTCGGCGTTGCCCTGCTTGTTGTGCTTTTTCTGGCAAAAAATTGGACACTTCGAGGACTTTGTATTGGATTTATCATATTCCTTGCTGTAGTCTGGGTTCTGCAAGAACTCACGACAGTCCGTATTCTGCGCTATGTCATTCTCTTTATTGGTATACTCTTATCTTGTGATATTTATGATGATTTAATATCTAGAAGAGTCCACTCCAGTGATGCGGAAAAGTTTGCGGAAGTTTGCCCCTGTCCCTGCACTGGGGTTGGATGGGGAATCATATGCTGTGTACCTTGGACTCGTCATCTTGTCCTGAGGTACAAGTTCTCCTTCATCCAAATGATTTTACTTCTACGTCTGCTGAGAAAAAGTGTCACTGACAAGGCAAGGAAGGCAAGTCTGCTCAAAGAGACTGCACAAGGCCTTTTCAATCTCTTGGGGTTTGCAACAAACGCCATCTTCACCTTCACCTTCGCCATCCTCAATGTCAAAAGAAAACTAGAAAAAATGGATGATAGTACAGCAGGGAAAATGGCGTCGTCTTTGATCATTCCAGAGAAGCCGACGCACAGGCCTGGTGGTTGTGTTGGTATTTTCTTTCAGCTCTTCGATTGGAAACGCAGGTTCGCCAAGAAAAAGCTCTTCTCCCAGAAACTGCTTCCTCCATCTCGTGCGAAACAACTACTCAACAAGTTTGGAGATGACAAGATGCCCATTTCTAAGCTTCATTTGATAGCTGATGAGAATAGTGGGAACCTGAAGAAAAATTTAAATTATTCTTGTGCTTCTGGTCAAAAGCATGAGCTTCGAGCTCCAGGTTTGGTTGCTAGGCTAATGGGTCTTGAATATATGCCTGCGGCCCATGAGAAGCCTCACAATACTCAAGTTATTCATGCTTGTGATGGTCGACAGAAGGAAAAAATCAAGAACCAAAATGTTTCTGATAGACAAGAGCTTTTGGAAAAAGGAGAAGCAAAGCCTGAATCAAGGCCTCAAAAGCTTCAGAAAATGGGACTCTATGATAAAACAGCAGTGACTAGGTTTGGAGCTGAGTCACTTCAAGTCAAGAGTGTTTTACCAAGATCGAGAAAGCATTATCAGCACCAGAAGCTTGCTTCTCCAGTCAAGAGTTCAAAGATCTCCTCTGGTAAGACTGCCTCACGAACCTCTCGGTTGATTGGTGCTGCTACTAAAATCTTGGATCCCGGGCTGCAGTCTACGAATAGAGCCAAATGTGCTCTCATCAGCTCTTTTCATCATCCTCAAGCGGATGCAACCCTGGCTCAATCACCAGACGTATCTAAGAAGACACACTATGATGCTGGTAAGGGCAACAAGGGCAACTCTCCGATGGGGCAGACCTGTTGCAAAGAGTGTGGTAATTTGCTACATGTTCCAGACGTAACATCTAGAGTGGAGGAACAACAACATGTTTTCCCATCCTATGCTTCAAATATTACTAATTCCTATTCTCTGTTAGCAGAACAAAGTAGGCCATCCATATCCTCCTTTGCTTGTGCAAAGGATTCAATCTTTCAGAGAACAAGAAACCAACCTTTATCAGTTTCTGGTCAAAAGAACATTAGAACCCATGGCAAACCTTTTAAGGAAAGAAAGGCTCCGTCCCCTGAAGGTCAAGCTTCATGCCAATTGTCAAGTCCACCATATAAGCCTCACAGATATCAGATGCAGCACCCAATGTCACTAGGGAAGGAAAGAATTCCACCCAGATATAAACTAAATAATCTGGATAGCAGAAGAGCCTCATCGGCTGTAAATGCTGTTAGAGGGACCGAAGACTTCATTGACTTGAACCGAAGTCTAAGCAATTGTACCTGCCCGATGGTGCCTACCAAAGGGAAAGAGTCAAAGTTTGAGAGAGAAAGGAAAGCATTTATTGGGAAGGATGATTCCCCATTCCAGTTAAGAACCTCAATAAGAAAGAGGAGGATGATCCATGTCAGTGGACAAGTTACAAATACAGGTATTGTTACTTCAACTACCACAATACAAAGGAACACTCAGTTTGGTGCACCAGCAGGGAATGGATTAGGAAATGGTACCGACGTAATGAGCCAGACTTGTGCTAATAGTGAATTAGCTGATAAACAAGATGGTAACAGAGCTTATGGAAATACAGACACTGATGTCATGTCATTCACATATAATTCCCCTATAACGAGCAAGACTGGAATATCGGCAGAAATGGAGGAACAAAAGTTGAGGGAGCTAGCTTGTCTTGAAGATGATGACTTGGCGATAGGTGCTTCATCCAAGAGATCCACTGCTATGATTCACGATGGCCACATTTCGAGTTATTCTCAGAAAATCTTTACAGCCAAAGGGAAGCCAAAGAAGTCGGCTGGAACATCTCTTGATGGTGATCATCTGAGCCCTGGGTCTGTTCTTGAAGCTTCATTCTCTTCTAGTAGTATGGATGATAGCTCAGGGCGCAGATCCTTCTACCCTATCTCTCTCGAGTACCCTGATGATCATTTGCAAGCACAAGGATATGATGCTGATCTTACAGGCTCTGCCACTTCCGGGGGCCGAAAGAAGACCAGTAGAGAGATGATGATTACTCTTGTCAACAATGTATGTAGGATATTGCATAGCACCAATGCGGATGGGGAGAGAGTGAGAAGAAGGAAGCTGACTCATGCATGTGAAATTATCTTAAATGCTGAACTATTGTTTGGAGATGCAACCATGCATAACATGGATGGAATGGAAGGGTCTTTCATGAGTCCGTTTCTTCGTGATCTGGAAACTATTGCTAGTAGCAGGATTACTAGTTTCAATATGTTTGGTGGTTTGGAGGATATCGAAAAGGGAAGTCAACTGGATGGGTTATTTTTTGACTGTGTTATAGAGTATATAGACTCGAAGTATGCCTGGTACTGTAACGCAGGGTTCAGATATTGGAAAGAGCTGCCTTTAAGCATGAACCAGAAATTGATATTTCAAGAGGTTGAAGAGGAAATTAAGAAATGGACACGCTTGTCTGGAATGATTTCTGATGAGATTGTGGCTTGGGAGATGAGTCATTCCTTCAGGAAATGGACAGAGTTTGACATCAAGGCTTTTGAGGCTGGATCTGAAATTGACGGAGACATTCTTCAAACTTTGGTCAATGAGGTTGCGATAGACCTGTGGGAGTGCAGCATTGGCTCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1197

Amino Acids

133.32

Weight (kDa)

9.17

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50B PF13398 97 - 234 1.2e-19 Peptidase M50B-like
VARLMGL PF14383 403 - 426 7.4e-11 DUF761-associated sequence motif
DUF4378 PF14309 1085 - 1184 8.1e-15 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 2561, 3415
Acc36I ACCTGC 2 cut(s) 1026, 2258
Acc65I GGTACC 1 cut(s) 2474
AccB1I GGYRCC 2 cut(s) 2260, 2474
AccI GTMKAC 3 cut(s) 577, 1321, 1631
AciI CCGC 5 cut(s) 638, 650, 1271, 1682, 3038
AclWI GGATC 6 cut(s) 1610, 1623, 2362, 2688, 2865, 3517
AcoI YGGCCR 1 cut(s) 2716
AcsI RAATTY 3 cut(s) 69, 1180, 2133
AcuI CTGAAG 4 cut(s) 1193, 1400, 2064, 3451
AcvI CACGTG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 950
AdeI CACNNNGTG 1 cut(s) 341
AfaI GTAC 7 cut(s) 705, 734, 934, 2248, 2476, 2897, 3314
AfiI CCNNNNNNNGG 4 cut(s) 674, 675, 2270, 2958
AflII CTTAAG 1 cut(s) 253
AflIII ACRYGT 3 cut(s) 335, 1804, 1843
AhlI ACTAGT 1 cut(s) 3206
AjnI CCWGG 6 cut(s) 300, 988, 1228, 1692, 2809, 3308
AjuI GAANNNNNNNTTGG 2 cut(s) 3093, 3125
AleI CACNNNNGTG 1 cut(s) 630
Alw21I GWGCWC 3 cut(s) 1228, 1654, 2449
Alw26I GTCTC 5 cut(s) 52, 119, 166, 818, 3519
Alw44I GTGCAC 1 cut(s) 2445
AlwI GGATC 6 cut(s) 1610, 1623, 2362, 2688, 2865, 3517
AlwNI CAGNNNCTG 5 cut(s) 230, 1069, 1982, 2558, 2948
Ama87I CYCGRG 2 cut(s) 1619, 2891
AoxI GGCC 7 cut(s) 835, 986, 1272, 1403, 1907, 2716, 2962
ApaLI GTGCAC 1 cut(s) 2445
ApeKI GCWGC 6 cut(s) 413, 1598, 1624, 2104, 3346, 3576
ApoI RAATTY 3 cut(s) 69, 1180, 2133
Asp700I GAANNNNTTC 2 cut(s) 2133, 3427
Asp718I GGTACC 1 cut(s) 2474
AspLEI GCGC 2 cut(s) 555, 2868
AspS9I GGNCC 4 cut(s) 273, 1273, 2205, 2962
AsuC2I CCSGG 3 cut(s) 1620, 1621, 2959
AsuHPI GGTGA 5 cut(s) 353, 868, 874, 1695, 2807
AsuNHI GCTAGC 1 cut(s) 2644
AvaI CYCGRG 2 cut(s) 1619, 2891
AvaII GGWCC 2 cut(s) 273, 2205
AxyI CCTNAGG 1 cut(s) 728
BaeGI GKGCMC 1 cut(s) 2449
BaeI ACNNNNGTAYC 4 cut(s) 368, 401, 2466, 2499
BalI TGGCCA 1 cut(s) 2718
BamHI GGATCC 1 cut(s) 1615
BanI GGYRCC 2 cut(s) 2260, 2474
BanII GRGCYC 2 cut(s) 1228, 2810
BarI GAAGNNNNNNTAC 2 cut(s) 2392, 2424
BauI CACGAG 1 cut(s) 1083
BbrPI CACGTG 1 cut(s) 338
BbsI GAAGAC 4 cut(s) 35, 1727, 2217, 2978
Bbv12I GWGCWC 3 cut(s) 1228, 1654, 2449
BbvI GCAGC 6 cut(s) 400, 1585, 1611, 2116, 3333, 3588
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BciT130I CCWGG 6 cut(s) 302, 990, 1230, 1694, 2811, 3310
BciVI GTATCC 1 cut(s) 308
BclI TGATCA 3 cut(s) 960, 2797, 2905
BcnI CCSGG 3 cut(s) 1620, 1621, 2959
BcoDI GTCTC 5 cut(s) 52, 119, 166, 818, 3519
BcuI ACTAGT 1 cut(s) 3206
BfmI CTRYAG 2 cut(s) 510, 1625
BfrI CTTAAG 1 cut(s) 253
BfuAI ACCTGC 2 cut(s) 1026, 2258
BfuI GTATCC 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 2183
BglII AGATCT 1 cut(s) 1551
BisI GCNGC 7 cut(s) 414, 1272, 1599, 1625, 2105, 3347, 3577
BlsI GCNGC 7 cut(s) 415, 1273, 1600, 1626, 2106, 3348, 3578
Bme1390I CCNGG 9 cut(s) 302, 990, 1230, 1620, 1621, 1694, 2811, 2959, 3310
Bme18I GGWCC 2 cut(s) 273, 2205
BmeT110I CYCGRG 2 cut(s) 1619, 2891
BmgT120I GGNCC 4 cut(s) 273, 1273, 2205, 2962
BmiI GGNNCC 8 cut(s) 1169, 1617, 2034, 2206, 2262, 2476, 2963, 3586
BmrFI CCNGG 9 cut(s) 302, 990, 1230, 1620, 1621, 1694, 2811, 2959, 3310
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 7 cut(s) 625, 1113, 1675, 1723, 2091, 2920, 3106
BmtI GCTAGC 1 cut(s) 2648
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 4 cut(s) 35, 1727, 2217, 2978
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 2719, 2751
BpmI CTGGAG 3 cut(s) 613, 1212, 1518
Bpu10I CCTNAGC 1 cut(s) 2860
BpuEI CTTGAG 3 cut(s) 85, 1281, 1662
BpuMI CCSGG 3 cut(s) 1620, 1621, 2959
BsaAI YACGTR 1 cut(s) 338
BsaBI GATNNNNATC 2 cut(s) 2796, 2934
BsaHI GRCGYC 1 cut(s) 950
BsaJI CCNNGG 7 cut(s) 707, 1619, 1692, 2005, 2809, 2810, 2958
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 4 cut(s) 674, 675, 2270, 2958
Bse1I ACTGG 7 cut(s) 630, 679, 1535, 2335, 2608, 2976, 3261
Bse21I CCTNAGG 1 cut(s) 728
Bse8I GATNNNNATC 2 cut(s) 2796, 2934
BseBI CCWGG 6 cut(s) 302, 990, 1230, 1694, 2811, 3310
BseDI CCNNGG 7 cut(s) 707, 1619, 1692, 2005, 2809, 2810, 2958
BseJI GATNNNNATC 2 cut(s) 2796, 2934
BseLI CCNNNNNNNGG 4 cut(s) 674, 675, 2270, 2958
BseMII CTCAG 7 cut(s) 719, 767, 1455, 2450, 2750, 2795, 2874
BseNI ACTGG 7 cut(s) 630, 679, 1535, 2335, 2608, 2976, 3261
BseRI GAGGAG 2 cut(s) 1546, 2374
BseSI GKGCMC 1 cut(s) 2449
BseXI GCAGC 6 cut(s) 400, 1585, 1611, 2116, 3333, 3588
BsgI GTGCAG 2 cut(s) 655, 813
BshFI GGCC 7 cut(s) 837, 988, 1274, 1405, 1909, 2718, 2964
BshNI GGYRCC 2 cut(s) 2260, 2474
BsiHKAI GWGCWC 3 cut(s) 1228, 1654, 2449
BsiHKCI CYCGRG 2 cut(s) 1619, 2891
BsiSI CCGG 2 cut(s) 1620, 2958
BslFI GGGAC 5 cut(s) 91, 651, 1440, 2023, 2218
BslI CCNNNNNNNGG 4 cut(s) 674, 675, 2270, 2958
BsmAI GTCTC 5 cut(s) 52, 119, 166, 818, 3519
BsmFI GGGAC 5 cut(s) 91, 651, 1440, 2023, 2218
BsnI GGCC 7 cut(s) 837, 988, 1274, 1405, 1909, 2718, 2964
BsoBI CYCGRG 2 cut(s) 1619, 2891
Bsp1286I GDGCHC 4 cut(s) 1228, 1654, 2449, 2810
Bsp19I CCATGG 1 cut(s) 2005
BspACI CCGC 5 cut(s) 638, 650, 1271, 1682, 3038
BspANI GGCC 7 cut(s) 837, 988, 1274, 1405, 1909, 2718, 2964
BspCNI CTCAG 7 cut(s) 720, 768, 1456, 2449, 2749, 2796, 2873
BspHI TCATGA 1 cut(s) 3156
BspLI GGNNCC 8 cut(s) 1169, 1617, 2034, 2206, 2262, 2476, 2963, 3586
BspMAI CTGCAG 1 cut(s) 1629
BspMI ACCTGC 2 cut(s) 1026, 2258
BspOI GCTAGC 1 cut(s) 2648
BspPI GGATC 6 cut(s) 1610, 1623, 2362, 2688, 2865, 3517
BspQI GCTCTTC 3 cut(s) 1025, 1061, 2167
BspT107I GGYRCC 2 cut(s) 2260, 2474
BspTI CTTAAG 1 cut(s) 253
BsrI ACTGG 7 cut(s) 630, 679, 1535, 2335, 2608, 2976, 3261
BssECI CCNNGG 7 cut(s) 707, 1619, 1692, 2005, 2809, 2810, 2958
BssNAI GTATAC 1 cut(s) 578
BssNI GRCGYC 1 cut(s) 950
BssSI CACGAG 1 cut(s) 1083
BssT1I CCWWGG 2 cut(s) 707, 2005
Bst1107I GTATAC 1 cut(s) 578
Bst2BI CACGAG 1 cut(s) 1083
Bst2UI CCWGG 6 cut(s) 302, 990, 1230, 1694, 2811, 3310
Bst4CI ACNGT 3 cut(s) 541, 3278, 3317
Bst6I CTCTTC 8 cut(s) 16, 191, 613, 1025, 1061, 2167, 2842, 3384
BstACI GRCGYC 1 cut(s) 950
BstAFI CTTAAG 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 4 cut(s) 1269, 1527, 2646, 2916
BstDSI CCRYGG 1 cut(s) 2005
BstENI CCTNNNNNAGG 1 cut(s) 2268
BstHHI GCGC 2 cut(s) 555, 2868
BstMAI GTCTC 5 cut(s) 52, 119, 166, 818, 3519
BstNI CCWGG 6 cut(s) 302, 990, 1230, 1694, 2811, 3310
BstNSI RCATGY 3 cut(s) 1808, 1847, 3081
BstSCI CCNGG 9 cut(s) 300, 988, 1228, 1618, 1619, 1692, 2809, 2957, 3308
BstSFI CTRYAG 2 cut(s) 510, 1625
BstSLI GKGCMC 1 cut(s) 2449
BstV1I GCAGC 6 cut(s) 400, 1585, 1611, 2116, 3333, 3588
BstV2I GAAGAC 4 cut(s) 35, 1727, 2217, 2978
BstX2I RGATCY 5 cut(s) 1551, 1615, 2693, 2870, 3509
BstXI CCANNNNNNTGG 1 cut(s) 2378
BstYI RGATCY 5 cut(s) 1551, 1615, 2693, 2870, 3509
BstZ17I GTATAC 1 cut(s) 578
Bsu36I CCTNAGG 1 cut(s) 728
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 7 cut(s) 837, 988, 1274, 1405, 1909, 2718, 2964
BtgI CCRYGG 1 cut(s) 2005
BtsI GCAGTG 2 cut(s) 1452, 2697
BtsIMutI CAGTG 7 cut(s) 637, 672, 789, 1452, 2383, 2556, 2697
BveI ACCTGC 2 cut(s) 1026, 2258
Cac8I GCNNGC 4 cut(s) 1269, 1527, 2646, 2916
CaiI CAGNNNCTG 5 cut(s) 230, 1069, 1982, 2558, 2948
CciI TCATGA 1 cut(s) 3156
CfoI GCGC 2 cut(s) 555, 2868
Cfr13I GGNCC 4 cut(s) 273, 1273, 2205, 2962
Cfr9I CCCGGG 1 cut(s) 1619
CseI GACGC 3 cut(s) 372, 939, 988
Csp6I GTAC 7 cut(s) 704, 733, 933, 2247, 2475, 2896, 3313
CspCI CAANNNNNGTGG 2 cut(s) 1771, 1806
CviQI GTAC 7 cut(s) 704, 733, 933, 2247, 2475, 2896, 3313
DraI TTTAAA 1 cut(s) 1185
DraIII CACNNNGTG 1 cut(s) 341
DrdI GACNNNNNNGTC 2 cut(s) 2561, 3415
DseDI GACNNNNNNGTC 2 cut(s) 2561, 3415
EaeI YGGCCR 1 cut(s) 2716
Eam1104I CTCTTC 8 cut(s) 16, 191, 613, 1025, 1061, 2167, 2842, 3384
EarI CTCTTC 8 cut(s) 16, 191, 613, 1025, 1061, 2167, 2842, 3384
Ecl136II GAGCTC 1 cut(s) 1226
Eco130I CCWWGG 2 cut(s) 707, 2005
Eco147I AGGCCT 3 cut(s) 837, 988, 1405
Eco24I GRGCYC 2 cut(s) 1228, 2810
Eco32I GATATC 2 cut(s) 2096, 3238
Eco47I GGWCC 2 cut(s) 273, 2205
Eco53kI GAGCTC 1 cut(s) 1226
Eco57I CTGAAG 4 cut(s) 1193, 1400, 2064, 3451
Eco72I CACGTG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 728
Eco88I CYCGRG 2 cut(s) 1619, 2891
EcoICRI GAGCTC 1 cut(s) 1226
EcoNI CCTNNNNNAGG 1 cut(s) 2268
EcoRI GAATTC 2 cut(s) 69, 2133
EcoRII CCWGG 6 cut(s) 300, 988, 1228, 1692, 2809, 3308
EcoRV GATATC 2 cut(s) 2096, 3238
EcoT14I CCWWGG 2 cut(s) 707, 2005
EcoT22I ATGCAT 2 cut(s) 3079, 3129
EcoT38I GRGCYC 2 cut(s) 1228, 2810
ErhI CCWWGG 2 cut(s) 707, 2005
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 728, 760
FaqI GGGAC 5 cut(s) 91, 651, 1440, 2023, 2218
FauNDI CATATG 1 cut(s) 695
FbaI TGATCA 3 cut(s) 960, 2797, 2905
FblI GTMKAC 3 cut(s) 577, 1321, 1631
Fnu4HI GCNGC 7 cut(s) 414, 1272, 1599, 1625, 2105, 3347, 3577
FriOI GRGCYC 2 cut(s) 1228, 2810
Fsp4HI GCNGC 7 cut(s) 414, 1272, 1599, 1625, 2105, 3347, 3577
GlaI GCGC 2 cut(s) 554, 2867
GluI GCNGC 7 cut(s) 414, 1272, 1599, 1625, 2105, 3347, 3577
GsuI CTGGAG 3 cut(s) 613, 1212, 1518
HaeIII GGCC 7 cut(s) 837, 988, 1274, 1405, 1909, 2718, 2964
HapII CCGG 2 cut(s) 1620, 2958
HgaI GACGC 3 cut(s) 372, 939, 988
HhaI GCGC 2 cut(s) 555, 2868
Hin1I GRCGYC 1 cut(s) 950
Hin6I GCGC 2 cut(s) 553, 2866
HinP1I GCGC 2 cut(s) 553, 2866
HincII GTYRAC 4 cut(s) 387, 1322, 3004, 3254
HindII GTYRAC 4 cut(s) 387, 1322, 3004, 3254
HindIII AAGCTT 6 cut(s) 34, 1136, 1412, 1523, 2052, 2826
HpaII CCGG 2 cut(s) 1620, 2958
HphI GGTGA 5 cut(s) 353, 868, 874, 1695, 2807
Hpy99I CGWCG 3 cut(s) 955, 982, 2483
HpyCH4III ACNGT 3 cut(s) 541, 3278, 3317
HpyCH4IV ACGT 5 cut(s) 337, 769, 1710, 1815, 2481
HpySE526I ACGT 5 cut(s) 337, 769, 1710, 1815, 2481
Hsp92I GRCGYC 1 cut(s) 950
HspAI GCGC 2 cut(s) 553, 2866
KpnI GGTACC 1 cut(s) 2478
Ksp22I TGATCA 3 cut(s) 960, 2797, 2905
LguI GCTCTTC 3 cut(s) 1025, 1061, 2167
LmnI GCTCC 6 cut(s) 151, 1231, 1460, 2038, 2641, 3590
Lsp1109I GCAGC 6 cut(s) 400, 1585, 1611, 2116, 3333, 3588
LweI GCATC 7 cut(s) 625, 1113, 1675, 1723, 2091, 2920, 3106
MaeII ACGT 5 cut(s) 337, 769, 1710, 1815, 2481
MaeIII GTNAC 9 cut(s) 787, 1447, 1467, 1816, 2115, 2386, 2404, 2531, 3317
MfeI CAATTG 2 cut(s) 2063, 2242
MflI RGATCY 5 cut(s) 1551, 1615, 2693, 2870, 3509
MhlI GDGCHC 4 cut(s) 1228, 1654, 2449, 2810
MlsI TGGCCA 1 cut(s) 2718
MluNI TGGCCA 1 cut(s) 2718
MmeI TCCRAC 1 cut(s) 661
Mox20I TGGCCA 1 cut(s) 2718
Mph1103I ATGCAT 2 cut(s) 3079, 3129
MroXI GAANNNNTTC 2 cut(s) 2133, 3427
MscI TGGCCA 1 cut(s) 2718
MseI TTAA 9 cut(s) 146, 254, 608, 1184, 2019, 2339, 3092, 3353, 3399
MslI CAYNNNNRTG 8 cut(s) 312, 630, 752, 1311, 1731, 2376, 2702, 3078
Msp20I TGGCCA 1 cut(s) 2718
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 2 cut(s) 1620, 2958
MspR9I CCNGG 9 cut(s) 302, 990, 1230, 1620, 1621, 1694, 2811, 2959, 3310
MunI CAATTG 2 cut(s) 2063, 2242
MvaI CCWGG 6 cut(s) 302, 990, 1230, 1694, 2811, 3310
NciI CCSGG 3 cut(s) 1620, 1621, 2959
NcoI CCATGG 1 cut(s) 2005
NdeI CATATG 1 cut(s) 695
NheI GCTAGC 1 cut(s) 2644
NlaIV GGNNCC 8 cut(s) 1169, 1617, 2034, 2206, 2262, 2476, 2963, 3586
NmuCI GTSAC 4 cut(s) 787, 1447, 1467, 2115
NsiI ATGCAT 2 cut(s) 3079, 3129
NspI RCATGY 3 cut(s) 1808, 1847, 3081
OliI CACNNNNGTG 1 cut(s) 630
PaeR7I CTCGAG 1 cut(s) 2891
PagI TCATGA 1 cut(s) 3156
PasI CCCWGGG 1 cut(s) 2810
PceI AGGCCT 3 cut(s) 837, 988, 1405
PciI ACATGT 2 cut(s) 1804, 1843
PciSI GCTCTTC 3 cut(s) 1025, 1061, 2167
PdmI GAANNNNTTC 2 cut(s) 2133, 3427
PfeI GAWTC 6 cut(s) 262, 690, 1397, 1940, 2324, 2707
PkrI GCNGC 7 cut(s) 415, 1273, 1600, 1626, 2106, 3348, 3578
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 338
PscI ACATGT 2 cut(s) 1804, 1843
Psp124BI GAGCTC 1 cut(s) 1228
Psp6I CCWGG 6 cut(s) 300, 988, 1228, 1692, 2809, 3308
PspCI CACGTG 1 cut(s) 338
PspGI CCWGG 6 cut(s) 300, 988, 1228, 1692, 2809, 3308
PspN4I GGNNCC 8 cut(s) 1169, 1617, 2034, 2206, 2262, 2476, 2963, 3586
PspPI GGNCC 4 cut(s) 273, 1273, 2205, 2962
PsrI GAACNNNNNNTAC 2 cut(s) 504, 536
PstI CTGCAG 1 cut(s) 1629
PstNI CAGNNNCTG 5 cut(s) 230, 1069, 1982, 2558, 2948
PsuI RGATCY 5 cut(s) 1551, 1615, 2693, 2870, 3509
RsaI GTAC 7 cut(s) 705, 734, 934, 2248, 2476, 2897, 3314
RsaNI GTAC 7 cut(s) 704, 733, 933, 2247, 2475, 2896, 3313
RseI CAYNNNNRTG 8 cut(s) 312, 630, 752, 1311, 1731, 2376, 2702, 3078
SacI GAGCTC 1 cut(s) 1228
SalI GTCGAC 1 cut(s) 1320
SapI GCTCTTC 3 cut(s) 1025, 1061, 2167
SaqAI TTAA 9 cut(s) 146, 254, 608, 1184, 2019, 2339, 3092, 3353, 3399
SatI GCNGC 7 cut(s) 414, 1272, 1599, 1625, 2105, 3347, 3577
Sau96I GGNCC 4 cut(s) 273, 1273, 2205, 2962
ScrFI CCNGG 9 cut(s) 302, 990, 1230, 1620, 1621, 1694, 2811, 2959, 3310
SduI GDGCHC 4 cut(s) 1228, 1654, 2449, 2810
SfaNI GCATC 7 cut(s) 625, 1113, 1675, 1723, 2091, 2920, 3106
SfcI CTRYAG 2 cut(s) 510, 1625
Sfr274I CTCGAG 1 cut(s) 2891
SinI GGWCC 2 cut(s) 273, 2205
SlaI CTCGAG 1 cut(s) 2891
SmaI CCCGGG 1 cut(s) 1621
SmiI ATTTAAAT 1 cut(s) 1185
SmiMI CAYNNNNRTG 8 cut(s) 312, 630, 752, 1311, 1731, 2376, 2702, 3078
SmlI CTYRAG 5 cut(s) 64, 253, 1296, 1677, 2891
SmoI CTYRAG 5 cut(s) 64, 253, 1296, 1677, 2891
SpeI ACTAGT 1 cut(s) 3206
SseBI AGGCCT 3 cut(s) 837, 988, 1405
SsiI CCGC 5 cut(s) 638, 650, 1271, 1682, 3038
SspI AATATT 1 cut(s) 1870
SstI GAGCTC 1 cut(s) 1228
StuI AGGCCT 3 cut(s) 837, 988, 1405
StyD4I CCNGG 9 cut(s) 300, 988, 1228, 1618, 1619, 1692, 2809, 2957, 3308
StyI CCWWGG 2 cut(s) 707, 2005
SwaI ATTTAAAT 1 cut(s) 1185
TaaI ACNGT 3 cut(s) 541, 3278, 3317
TaiI ACGT 5 cut(s) 340, 772, 1713, 1818, 2484
TaqI TCGA 9 cut(s) 475, 1023, 1222, 1321, 1499, 2726, 2892, 3240, 3299
TaqII GACCGA 1 cut(s) 2222
TatI WGTACW 1 cut(s) 932
TauI GCSGC 1 cut(s) 1274
TfiI GAWTC 6 cut(s) 262, 690, 1397, 1940, 2324, 2707
Tru1I TTAA 9 cut(s) 146, 254, 608, 1184, 2019, 2339, 3092, 3353, 3399
Tru9I TTAA 9 cut(s) 146, 254, 608, 1184, 2019, 2339, 3092, 3353, 3399
TscAI CASTG 7 cut(s) 637, 679, 796, 1452, 2383, 2563, 2704
TseFI GTSAC 4 cut(s) 787, 1447, 1467, 2115
TseI GCWGC 6 cut(s) 413, 1598, 1624, 2104, 3346, 3576
Tsp45I GTSAC 4 cut(s) 787, 1447, 1467, 2115
TspGWI ACGGA 4 cut(s) 533, 2025, 3153, 3537
TspMI CCCGGG 1 cut(s) 1619
TspRI CASTG 7 cut(s) 637, 679, 796, 1452, 2383, 2563, 2704
Vha464I CTTAAG 1 cut(s) 253
VneI GTGCAC 1 cut(s) 2445
VpaK11BI GGWCC 2 cut(s) 273, 2205
XagI CCTNNNNNAGG 1 cut(s) 2268
XapI RAATTY 3 cut(s) 69, 1180, 2133
XbaI TCTAGA 2 cut(s) 614, 1823
XceI RCATGY 3 cut(s) 1808, 1847, 3081
XcmI CCANNNNNNNNNTGG 2 cut(s) 283, 3130
XhoI CTCGAG 1 cut(s) 2891
XmaI CCCGGG 1 cut(s) 1619
XmiI GTMKAC 3 cut(s) 577, 1321, 1631
XmnI GAANNNNTTC 2 cut(s) 2133, 3427
Zsp2I ATGCAT 2 cut(s) 3079, 3129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.