Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011441

Physical Location & Seq

Genomic Coordinates Reverse (-)

45151612 .. 45155257

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG318100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGGATGATAGTACAGCAGGGAAAATGGCGTCGTCTTTGATCATTCCAGAGAAGCCGACGCACAGGCCTGGTGGTTGTGTTGGTATTTTCTTTCAGCTCTTCGATTGGAAACGCAGGTTCGCCAAGAAAAAGCTCTTCTCCCAGAAACTGCTTCCTCCATCTCGTGCGAAACAACTACTCAACAAGTTTGGAGATGACAAGATGCCCATTTCTAGGCTTCATTTGATAGCTGATGAGAACAGTGGGAACCTGAAGAAAAATTCAAATTATTCTTGTGCTTCTGGTCAAAAGCATGAGCTTCGAGCTCCAGGTTTGGTTGCTAGGCTAATGGGTCTTGAATACATGCCTGCGGCCCATGAGAAGCCTCACAATACTCAAGTTATTCATGCTTGTGATGGTCGTCGACAGAAGGAAAAAATCAAGAACCAAAATGTTTCTGATAGACAAGAGCTTTTGGAAAAAGGAGAAGCAAAGCCTGAATCAAGGCCTCAAAAGCTTCAGAAAATGGGACTCTATGATAAAACAGCAGTGACTAGGTTTGGAGCTGAGTCACTTCAAGTCAAGAGTGTTTTGCCAAGATCGAGAAAGCATCATCAGCACCAGAAGCTTGCTTCTCCAGTCAAGAGTTCAAAGATCTCCTCCGGTAAGACTGCCTCACGAACCTCTCGGTTGATTGGTGCTGCTACTAAAATCTTGGATCCCGGGCTGCAGTCTACGAATAGAGCCAAATGTGCTCTCATCAGCTCTTTTCATCATCCTCAAGCGGATGCAACCCTGGCTCAATCACCAGACGTATCTAAGAAGACACACTATGATGCTGGTAAGGGCAACTCTCCGATGGAGCAGACCTGTTGCAAAGAGTGTGGTAATTTGCTACATGTTCCAGACTTAACATCTAGAGTGGAGGAACAACAACATGTTTTCCCTTCCTATGCTTCAAATATTACTAATTCCTGTTCTCTGTTAGCAGAACAAAGTAGGCCATCCATATCCTCCTTTGCGCAAGCAAAGGATTCAATCTTTCAGAGAACAAGAAACCAACCTTTATCAGTTTCTGGTCAACAGAACATTAGAACCCATGGCAAACCTTTTAAGGAAAGAAAGGCTCCGTCTCCTGAAGGTCAAGCTTCATGCCAATTGTCAAGTCAACCATATAAGCCTTACAGATATCAGATGCAGCACCCAATGTCACTAGGGAAGGAAAGAATTCCACCCAGATATAAACTAAATAATGCTGTTAGAGGGACCAAAGACTTCATTGACTTGAACCGAAGTCTAAGCAATCGTACCTGCCCGATGGTGCCTACCAAAGGGAAAGATTCAAAGTTTGAGAGAGAAGGGAAGGCATTTATTGGGAAGGATGATTCCCCATTCCAGTTAAGAACCTCAATAAGAAAGAGGAGGATGATCCATGTCAGTGGACAAGTTACAAATACAGGTATTGTTACTTCAACTACCACAATACAAAGGAACACTCAGTTTGGTGCACCAGCAGGGACTGGATTAGGAAATGGTACCGACTTAATGAGCCAGACTTGTGCTAATAGTGAATTAGCTGATAAACAAGATGGTAACAGAGCTTATGGAAATATAGACACTGATGTCATGTCATTCACATTTAATTCCCCTATAATGAGCAAGACTGGAATATCGGCAGAAAAGGAGGGTACGGGCATGGACAATGATGGAAAGATCTATTTCCAAAAACCATTGTCATTGAGTGGAGATGCTATTGGTGTCTTTCTAGAACAAAAGTTGAGGGAGCTAGCTTGTCTTGAAGATGATGACTTGGCGATAGGTGCTTCATCCAAGAGATCCACTGCTATGATTCACGATGGCCACATTTTGAGTTATTCTCAGAAAATCTTAACAGCCAAAGGGAAGCCAAAGAAGTCGGCTGGAATATCTCTTGATGGTGATCATCTGAGCCCTGGGTCTGTTCTTGAAGCTTCATTCTCTTCTGGTAGTATGGATGATGGCTCAGGGCGCAGATCCTTGTACCCTATCTCTCTCGACTACCCTGATGATCATTTGCAAGCACAAGGATATGATGCTGATCTTACAGGCTCTGCCACTTCCGGGGGCAGAAAGAAGACCAGTAGAGAGATGATGATTACTCTTGTCAACAATGTATGTAGGATATTGTATAGCATCAATGCGGATGGGGAGAGAGTGAGAAGAAGGAAGCTGACTCATGCATGTGAAATTATCTTAAATGCTGAACTATTGTTTGGAGATGCAACCATGCATAACATGGATGGAATGGAAGGGTCTTTCATGAGTCCCTTTCTTCGTGATCTGGAAGCTATTGCTAGTAGCAGGATGACTAGTTTCAATATGTTTGGTGGTTTGGAGGATATCGAAAAGGGCAGTCAACTGGATGGGTTATTTTTTGACTGTGTTATAGAGTATATAGACTCGAAGTATGCCTGGTACTGTAACGCAGGGTTCAGATATTGGAAAGAGCTGCCTTTAAGCATGAACCAGAAATTGATATTTCAAGAGGTTGAAGAAGAAATTAAGAAATGGACACGCTTGTCTGGAATGATTTCTGATGAGATTGTGGCTTGGGAGATGAGTCATTCGTTCAGGAAATGGACAGAGTTTGACATCGAGGCTTTTGAGGCTGGATCTGACATTGACGGAGACATTTTTCAAACTTTGGTCAATGAGGTTGCGATAGACCTGTGGGAGTGCAGCATTGGCTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

904

Amino Acids

100.36

Weight (kDa)

9.01

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	96 - 119	5.4e-11	DUF761-associated sequence motif
DUF4378	PF14309	790 - 891	7.8e-16	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67040 AT1G67040
malus_domestica	MD09G1253500.v1.1 MD09G1253600.v1.1 MD17G1245400.v1.1
prunus_persica	Prupe.3G143500_v2.0.a1
pyrus_communis	pycom09g16950 pycom17g24780 pycom17g24790
rosa_chinensis	RchiOBHm_Chr2g0126071
rosa_laevigata	RLG00000018886
rosa_multiflora	Rmu_sc0001506.1_g000003
rosa_roxburghii	Rroxscaffold_2G00117460
rosa_rugosa	Rorug02G0260600 Rorug02G0260700
rosa_samantha	Rh2AG318100 Rh2BG326500 Rh2DG344500 Rh2DG344600
rosa_wichuraiana	Rw2G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1601, 2536
Acc16I	TGCGCA	1 cut(s)	1002
Acc36I	ACCTGC	2 cut(s)	105, 1298
Acc65I	GGTACC	1 cut(s)	1514
AccB1I	GGYRCC	2 cut(s)	1300, 1514
AccI	GTMKAC	2 cut(s)	403, 713
AciI	CCGC	3 cut(s)	350, 764, 2159
AclWI	GGATC	6 cut(s)	692, 705, 1402, 1809, 1986, 2638
AcoI	YGGCCR	1 cut(s)	1837
AcsI	RAATTY	2 cut(s)	259, 1206
AcuI	CTGAAG	3 cut(s)	272, 482, 1137
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	6 cut(s)	13, 1288, 1516, 1669, 2000, 2435
AfiI	CCNNNNNNNGG	3 cut(s)	213, 1310, 2079
AflIII	ACRYGT	2 cut(s)	877, 916
AhlI	ACTAGT	1 cut(s)	2327
AjnI	CCWGG	5 cut(s)	67, 307, 774, 1930, 2429
AjuI	GAANNNNNNNTTGG	2 cut(s)	2214, 2246
Alw21I	GWGCWC	3 cut(s)	307, 736, 1489
Alw26I	GTCTC	2 cut(s)	1116, 2640
Alw44I	GTGCAC	1 cut(s)	1485
AlwI	GGATC	6 cut(s)	692, 705, 1402, 1809, 1986, 2638
AlwNI	CAGNNNCTG	4 cut(s)	148, 1055, 1499, 2069
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	5 cut(s)	65, 351, 485, 980, 1837
ApaLI	GTGCAC	1 cut(s)	1485
ApeKI	GCWGC	5 cut(s)	680, 706, 1177, 2467, 2697
ApoI	RAATTY	2 cut(s)	259, 1206
Asp700I	GAANNNNTTC	2 cut(s)	1206, 2548
Asp718I	GGTACC	1 cut(s)	1514
AspLEI	GCGC	2 cut(s)	1003, 1989
AspS9I	GGNCC	2 cut(s)	352, 1245
AsuC2I	CCSGG	3 cut(s)	702, 703, 2080
AsuHPI	GGTGA	2 cut(s)	777, 1928
AsuNHI	GCTAGC	1 cut(s)	1765
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	1245
BaeGI	GKGCMC	1 cut(s)	1489
BalI	TGGCCA	1 cut(s)	1839
BamHI	GGATCC	1 cut(s)	697
BanI	GGYRCC	2 cut(s)	1300, 1514
BanII	GRGCYC	2 cut(s)	307, 1931
BarI	GAAGNNNNNNTAC	2 cut(s)	1432, 1464
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	809, 2099
Bbv12I	GWGCWC	3 cut(s)	307, 736, 1489
BbvI	GCAGC	5 cut(s)	667, 693, 1189, 2454, 2709
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	5 cut(s)	69, 309, 776, 1932, 2431
BclI	TGATCA	3 cut(s)	39, 1918, 2026
BcnI	CCSGG	3 cut(s)	702, 703, 2080
BcoDI	GTCTC	2 cut(s)	1116, 2640
BcuI	ACTAGT	1 cut(s)	2327
BfaI	CTAG	9 cut(s)	213, 321, 534, 897, 1193, 1745, 1766, 2313, 2328
BfmI	CTRYAG	1 cut(s)	707
BfuAI	ACCTGC	2 cut(s)	105, 1298
BglII	AGATCT	2 cut(s)	633, 1692
BisI	GCNGC	6 cut(s)	351, 681, 707, 1178, 2468, 2698
BlsI	GCNGC	6 cut(s)	352, 682, 708, 1179, 2469, 2699
Bme1390I	CCNGG	8 cut(s)	69, 309, 702, 703, 776, 1932, 2080, 2431
Bme18I	GGWCC	1 cut(s)	1245
BmeT110I	CYCGRG	1 cut(s)	701
BmgT120I	GGNCC	2 cut(s)	352, 1245
BmiI	GGNNCC	7 cut(s)	248, 699, 1107, 1246, 1302, 1516, 2707
BmrFI	CCNGG	8 cut(s)	69, 309, 702, 703, 776, 1932, 2080, 2431
BmsI	GCATC	9 cut(s)	192, 598, 757, 805, 1164, 1717, 2041, 2160, 2227
BmtI	GCTAGC	1 cut(s)	1769
BpiI	GAAGAC	2 cut(s)	809, 2099
BplI	GAGNNNNNCTC	2 cut(s)	1840, 1872
BpmI	CTGGAG	2 cut(s)	291, 600
Bpu10I	CCTNAGC	1 cut(s)	1981
BpuEI	CTTGAG	2 cut(s)	360, 744
BpuMI	CCSGG	3 cut(s)	702, 703, 2080
BsaBI	GATNNNNATC	2 cut(s)	1917, 2055
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	6 cut(s)	701, 774, 1078, 1930, 1931, 2079
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 1310, 2079
Bse1I	ACTGG	6 cut(s)	617, 1375, 1504, 1648, 2097, 2382
Bse8I	GATNNNNATC	2 cut(s)	1917, 2055
BseBI	CCWGG	5 cut(s)	69, 309, 776, 1932, 2431
BseDI	CCNNGG	6 cut(s)	701, 774, 1078, 1930, 1931, 2079
BseJI	GATNNNNATC	2 cut(s)	1917, 2055
BseLI	CCNNNNNNNGG	3 cut(s)	213, 1310, 2079
BseMII	CTCAG	5 cut(s)	537, 1490, 1871, 1916, 1995
BseNI	ACTGG	6 cut(s)	617, 1375, 1504, 1648, 2097, 2382
BseRI	GAGGAG	2 cut(s)	628, 1414
BseSI	GKGCMC	1 cut(s)	1489
BseXI	GCAGC	5 cut(s)	667, 693, 1189, 2454, 2709
BshFI	GGCC	5 cut(s)	67, 353, 487, 982, 1839
BshNI	GGYRCC	2 cut(s)	1300, 1514
BsiHKAI	GWGCWC	3 cut(s)	307, 736, 1489
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	3 cut(s)	642, 702, 2079
BslFI	GGGAC	4 cut(s)	522, 1258, 1510, 2268
BslI	CCNNNNNNNGG	3 cut(s)	213, 1310, 2079
BsmAI	GTCTC	2 cut(s)	1116, 2640
BsmBI	CGTCTC	1 cut(s)	1116
BsmFI	GGGAC	4 cut(s)	522, 1258, 1510, 2268
BsnI	GGCC	5 cut(s)	67, 353, 487, 982, 1839
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	4 cut(s)	307, 736, 1489, 1931
Bsp19I	CCATGG	1 cut(s)	1078
BspACI	CCGC	3 cut(s)	350, 764, 2159
BspANI	GGCC	5 cut(s)	67, 353, 487, 982, 1839
BspCNI	CTCAG	5 cut(s)	538, 1489, 1870, 1917, 1994
BspHI	TCATGA	1 cut(s)	2277
BspLI	GGNNCC	7 cut(s)	248, 699, 1107, 1246, 1302, 1516, 2707
BspMAI	CTGCAG	1 cut(s)	711
BspMI	ACCTGC	2 cut(s)	105, 1298
BspOI	GCTAGC	1 cut(s)	1769
BspPI	GGATC	6 cut(s)	692, 705, 1402, 1809, 1986, 2638
BspQI	GCTCTTC	2 cut(s)	104, 140
BspT107I	GGYRCC	2 cut(s)	1300, 1514
BsrI	ACTGG	6 cut(s)	617, 1375, 1504, 1648, 2097, 2382
BssECI	CCNNGG	6 cut(s)	701, 774, 1078, 1930, 1931, 2079
BssNI	GRCGYC	1 cut(s)	29
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	1078
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	5 cut(s)	69, 309, 776, 1932, 2431
Bst4CI	ACNGT	3 cut(s)	242, 2399, 2438
Bst6I	CTCTTC	3 cut(s)	104, 140, 1963
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	5 cut(s)	348, 609, 1005, 1767, 2037
BstDEI	CTNAG	7 cut(s)	546, 798, 1277, 1476, 1857, 1925, 1981
BstDSI	CCRYGG	1 cut(s)	1078
BstENI	CCTNNNNNAGG	1 cut(s)	1308
BstHHI	GCGC	2 cut(s)	1003, 1989
BstMAI	GTCTC	2 cut(s)	1116, 2640
BstMWI	GCNNNNNNNGC	9 cut(s)	493, 595, 604, 731, 776, 1799, 1986, 2624, 2703
BstNI	CCWGG	5 cut(s)	69, 309, 776, 1932, 2431
BstNSI	RCATGY	4 cut(s)	346, 881, 920, 2202
BstSCI	CCNGG	8 cut(s)	67, 307, 700, 701, 774, 1930, 2078, 2429
BstSFI	CTRYAG	1 cut(s)	707
BstSLI	GKGCMC	1 cut(s)	1489
BstV1I	GCAGC	5 cut(s)	667, 693, 1189, 2454, 2709
BstV2I	GAAGAC	2 cut(s)	809, 2099
BstX2I	RGATCY	6 cut(s)	633, 697, 1692, 1814, 1991, 2630
BstXI	CCANNNNNNTGG	1 cut(s)	1418
BstYI	RGATCY	6 cut(s)	633, 697, 1692, 1814, 1991, 2630
BsuRI	GGCC	5 cut(s)	67, 353, 487, 982, 1839
BtgI	CCRYGG	1 cut(s)	1078
BtsI	GCAGTG	2 cut(s)	534, 1818
BtsIMutI	CAGTG	5 cut(s)	247, 534, 1423, 1596, 1818
BveI	ACCTGC	2 cut(s)	105, 1298
Cac8I	GCNNGC	5 cut(s)	348, 609, 1005, 1767, 2037
CaiI	CAGNNNCTG	4 cut(s)	148, 1055, 1499, 2069
CciI	TCATGA	1 cut(s)	2277
CfoI	GCGC	2 cut(s)	1003, 1989
Cfr13I	GGNCC	2 cut(s)	352, 1245
Cfr9I	CCCGGG	1 cut(s)	701
CseI	GACGC	2 cut(s)	18, 67
Csp6I	GTAC	6 cut(s)	12, 1287, 1515, 1668, 1999, 2434
CspCI	CAANNNNNGTGG	2 cut(s)	844, 879
CviQI	GTAC	6 cut(s)	12, 1287, 1515, 1668, 1999, 2434
DdeI	CTNAG	7 cut(s)	546, 798, 1277, 1476, 1857, 1925, 1981
DrdI	GACNNNNNNGTC	2 cut(s)	1601, 2536
DseDI	GACNNNNNNGTC	2 cut(s)	1601, 2536
EaeI	YGGCCR	1 cut(s)	1837
Eam1104I	CTCTTC	3 cut(s)	104, 140, 1963
EarI	CTCTTC	3 cut(s)	104, 140, 1963
Ecl136II	GAGCTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	1078
Eco147I	AGGCCT	2 cut(s)	67, 487
Eco24I	GRGCYC	2 cut(s)	307, 1931
Eco32I	GATATC	2 cut(s)	1169, 2359
Eco47I	GGWCC	1 cut(s)	1245
Eco53kI	GAGCTC	1 cut(s)	305
Eco57I	CTGAAG	3 cut(s)	272, 482, 1137
Eco88I	CYCGRG	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	1308
EcoRI	GAATTC	1 cut(s)	1206
EcoRII	CCWGG	5 cut(s)	67, 307, 774, 1930, 2429
EcoRV	GATATC	2 cut(s)	1169, 2359
EcoT14I	CCWWGG	1 cut(s)	1078
EcoT22I	ATGCAT	2 cut(s)	2200, 2250
EcoT38I	GRGCYC	2 cut(s)	307, 1931
ErhI	CCWWGG	1 cut(s)	1078
Esp3I	CGTCTC	1 cut(s)	1116
FaqI	GGGAC	4 cut(s)	522, 1258, 1510, 2268
FbaI	TGATCA	3 cut(s)	39, 1918, 2026
FblI	GTMKAC	2 cut(s)	403, 713
Fnu4HI	GCNGC	6 cut(s)	351, 681, 707, 1178, 2468, 2698
FriOI	GRGCYC	2 cut(s)	307, 1931
Fsp4HI	GCNGC	6 cut(s)	351, 681, 707, 1178, 2468, 2698
FspBI	CTAG	9 cut(s)	213, 321, 534, 897, 1193, 1745, 1766, 2313, 2328
FspI	TGCGCA	1 cut(s)	1002
GlaI	GCGC	2 cut(s)	1002, 1988
GluI	GCNGC	6 cut(s)	351, 681, 707, 1178, 2468, 2698
GsuI	CTGGAG	2 cut(s)	291, 600
HaeIII	GGCC	5 cut(s)	67, 353, 487, 982, 1839
HapII	CCGG	3 cut(s)	642, 702, 2079
HgaI	GACGC	2 cut(s)	18, 67
HhaI	GCGC	2 cut(s)	1003, 1989
Hin1I	GRCGYC	1 cut(s)	29
Hin6I	GCGC	2 cut(s)	1001, 1987
HinP1I	GCGC	2 cut(s)	1001, 1987
HincII	GTYRAC	5 cut(s)	404, 1061, 1148, 2125, 2375
HindII	GTYRAC	5 cut(s)	404, 1061, 1148, 2125, 2375
HindIII	AAGCTT	4 cut(s)	494, 605, 1125, 1947
HpaII	CCGG	3 cut(s)	642, 702, 2079
HphI	GGTGA	2 cut(s)	777, 1928
Hpy166II	GTNNAC	8 cut(s)	404, 714, 1061, 1148, 1421, 1487, 2125, 2375
Hpy8I	GTNNAC	8 cut(s)	404, 714, 1061, 1148, 1421, 1487, 2125, 2375
Hpy99I	CGWCG	3 cut(s)	34, 61, 405
HpyAV	CCTTC	9 cut(s)	403, 936, 1112, 1192, 1331, 1336, 1351, 2175, 2261
HpyCH4III	ACNGT	3 cut(s)	242, 2399, 2438
HpyCH4IV	ACGT	1 cut(s)	792
HpyF10VI	GCNNNNNNNGC	9 cut(s)	493, 595, 604, 731, 776, 1799, 1986, 2624, 2703
HpyF3I	CTNAG	7 cut(s)	546, 798, 1277, 1476, 1857, 1925, 1981
HpySE526I	ACGT	1 cut(s)	792
Hsp92I	GRCGYC	1 cut(s)	29
HspAI	GCGC	2 cut(s)	1001, 1987
KpnI	GGTACC	1 cut(s)	1518
Ksp22I	TGATCA	3 cut(s)	39, 1918, 2026
LguI	GCTCTTC	2 cut(s)	104, 140
LmnI	GCTCC	6 cut(s)	310, 542, 841, 1111, 1762, 2711
Lsp1109I	GCAGC	5 cut(s)	667, 693, 1189, 2454, 2709
LweI	GCATC	9 cut(s)	192, 598, 757, 805, 1164, 1717, 2041, 2160, 2227
MaeI	CTAG	9 cut(s)	213, 321, 534, 897, 1193, 1745, 1766, 2313, 2328
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	7 cut(s)	529, 549, 1188, 1426, 1444, 1571, 2438
MfeI	CAATTG	1 cut(s)	1136
MflI	RGATCY	6 cut(s)	633, 697, 1692, 1814, 1991, 2630
MhlI	GDGCHC	4 cut(s)	307, 736, 1489, 1931
MlsI	TGGCCA	1 cut(s)	1839
MluNI	TGGCCA	1 cut(s)	1839
MlyI	GAGTC	6 cut(s)	504, 557, 2185, 2290, 2411, 2587
Mox20I	TGGCCA	1 cut(s)	1839
Mph1103I	ATGCAT	2 cut(s)	2200, 2250
MroXI	GAANNNNTTC	2 cut(s)	1206, 2548
MscI	TGGCCA	1 cut(s)	1839
MseI	TTAA	9 cut(s)	890, 1092, 1379, 1523, 1620, 1868, 2213, 2474, 2520
MslI	CAYNNNNRTG	5 cut(s)	390, 813, 1416, 1823, 2199
Msp20I	TGGCCA	1 cut(s)	1839
MspI	CCGG	3 cut(s)	642, 702, 2079
MspR9I	CCNGG	8 cut(s)	69, 309, 702, 703, 776, 1932, 2080, 2431
MunI	CAATTG	1 cut(s)	1136
MvaI	CCWGG	5 cut(s)	69, 309, 776, 1932, 2431
MwoI	GCNNNNNNNGC	9 cut(s)	493, 595, 604, 731, 776, 1799, 1986, 2624, 2703
NciI	CCSGG	3 cut(s)	702, 703, 2080
NcoI	CCATGG	1 cut(s)	1078
NheI	GCTAGC	1 cut(s)	1765
NlaIV	GGNNCC	7 cut(s)	248, 699, 1107, 1246, 1302, 1516, 2707
NmuCI	GTSAC	3 cut(s)	529, 549, 1188
NsbI	TGCGCA	1 cut(s)	1002
NsiI	ATGCAT	2 cut(s)	2200, 2250
NspI	RCATGY	4 cut(s)	346, 881, 920, 2202
PagI	TCATGA	1 cut(s)	2277
PasI	CCCWGGG	1 cut(s)	1931
PceI	AGGCCT	2 cut(s)	67, 487
PciI	ACATGT	2 cut(s)	877, 916
PciSI	GCTCTTC	2 cut(s)	104, 140
PdmI	GAANNNNTTC	2 cut(s)	1206, 2548
PfeI	GAWTC	5 cut(s)	479, 1013, 1319, 1364, 1828
PkrI	GCNGC	6 cut(s)	352, 682, 708, 1179, 2469, 2699
PleI	GAGTC	6 cut(s)	504, 556, 2185, 2289, 2411, 2586
PpsI	GAGTC	6 cut(s)	504, 556, 2185, 2289, 2411, 2586
PscI	ACATGT	2 cut(s)	877, 916
Psp124BI	GAGCTC	1 cut(s)	307
Psp6I	CCWGG	5 cut(s)	67, 307, 774, 1930, 2429
PspGI	CCWGG	5 cut(s)	67, 307, 774, 1930, 2429
PspN4I	GGNNCC	7 cut(s)	248, 699, 1107, 1246, 1302, 1516, 2707
PspPI	GGNCC	2 cut(s)	352, 1245
PstI	CTGCAG	1 cut(s)	711
PstNI	CAGNNNCTG	4 cut(s)	148, 1055, 1499, 2069
PsuI	RGATCY	6 cut(s)	633, 697, 1692, 1814, 1991, 2630
RsaI	GTAC	6 cut(s)	13, 1288, 1516, 1669, 2000, 2435
RsaNI	GTAC	6 cut(s)	12, 1287, 1515, 1668, 1999, 2434
RseI	CAYNNNNRTG	5 cut(s)	390, 813, 1416, 1823, 2199
SacI	GAGCTC	1 cut(s)	307
SalI	GTCGAC	1 cut(s)	402
SapI	GCTCTTC	2 cut(s)	104, 140
SaqAI	TTAA	9 cut(s)	890, 1092, 1379, 1523, 1620, 1868, 2213, 2474, 2520
SatI	GCNGC	6 cut(s)	351, 681, 707, 1178, 2468, 2698
Sau96I	GGNCC	2 cut(s)	352, 1245
SchI	GAGTC	6 cut(s)	504, 557, 2185, 2290, 2411, 2587
ScrFI	CCNGG	8 cut(s)	69, 309, 702, 703, 776, 1932, 2080, 2431
SduI	GDGCHC	4 cut(s)	307, 736, 1489, 1931
SfaNI	GCATC	9 cut(s)	192, 598, 757, 805, 1164, 1717, 2041, 2160, 2227
SfcI	CTRYAG	1 cut(s)	707
SinI	GGWCC	1 cut(s)	1245
SmaI	CCCGGG	1 cut(s)	703
SmiMI	CAYNNNNRTG	5 cut(s)	390, 813, 1416, 1823, 2199
SmlI	CTYRAG	2 cut(s)	375, 759
SmoI	CTYRAG	2 cut(s)	375, 759
SpeI	ACTAGT	1 cut(s)	2327
SseBI	AGGCCT	2 cut(s)	67, 487
SsiI	CCGC	3 cut(s)	350, 764, 2159
SspI	AATATT	1 cut(s)	943
SspMI	CTAG	9 cut(s)	213, 321, 534, 897, 1193, 1745, 1766, 2313, 2328
SstI	GAGCTC	1 cut(s)	307
StuI	AGGCCT	2 cut(s)	67, 487
StyD4I	CCNGG	8 cut(s)	67, 307, 700, 701, 774, 1930, 2078, 2429
StyI	CCWWGG	1 cut(s)	1078
TaaI	ACNGT	3 cut(s)	242, 2399, 2438
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	8 cut(s)	102, 301, 403, 581, 2013, 2361, 2420, 2613
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	5 cut(s)	479, 1013, 1319, 1364, 1828
Tru1I	TTAA	9 cut(s)	890, 1092, 1379, 1523, 1620, 1868, 2213, 2474, 2520
Tru9I	TTAA	9 cut(s)	890, 1092, 1379, 1523, 1620, 1868, 2213, 2474, 2520
TscAI	CASTG	5 cut(s)	247, 534, 1423, 1603, 1825
TseFI	GTSAC	3 cut(s)	529, 549, 1188
TseI	GCWGC	5 cut(s)	680, 706, 1177, 2467, 2697
Tsp45I	GTSAC	3 cut(s)	529, 549, 1188
TspDTI	ATGAA	9 cut(s)	209, 374, 740, 1119, 1246, 1794, 1941, 2266, 2495
TspGWI	ACGGA	2 cut(s)	1098, 2658
TspMI	CCCGGG	1 cut(s)	701
TspRI	CASTG	5 cut(s)	247, 534, 1423, 1603, 1825
VneI	GTGCAC	1 cut(s)	1485
VpaK11BI	GGWCC	1 cut(s)	1245
XagI	CCTNNNNNAGG	1 cut(s)	1308
XapI	RAATTY	2 cut(s)	259, 1206
XbaI	TCTAGA	2 cut(s)	896, 1744
XceI	RCATGY	4 cut(s)	346, 881, 920, 2202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2251
XmaI	CCCGGG	1 cut(s)	701
XmiI	GTMKAC	2 cut(s)	403, 713
XmnI	GAANNNNTTC	2 cut(s)	1206, 2548
XspI	CTAG	9 cut(s)	213, 321, 534, 897, 1193, 1745, 1766, 2313, 2328
Zsp2I	ATGCAT	2 cut(s)	2200, 2250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.