Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004888

Physical Location & Seq

Genomic Coordinates Reverse (-)

23225317 .. 23226506

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTTCTTCAGGTATTTTGTACACATATTCTTGTTTCTTGTTTTCAAGGAATTTTTCGTGTTCACACTATGTCACTCCAACTCCTACTCCAACTCCAACCACGACCAACTTAATTCATTTCATTTCTACCAAATACTTCCACTTTCCCAAAATATGAATTCCTGGCTTTTCTTCTCATCCCATTTCGCCTTCTTTGTTTTCATCAACTTTCCTTTGTCCTCAAGCTTCGATTCCTACACAAATTGTAGTAACGCGTTTCACTGTGGAGACATCACACAAGTGGGATTTCCCTTTTGGGGAGATGGAAGGCCGGAGAGTTGCGGCTATCCGGAACTGAAGCTAACATGCTCGAACGATGTTACCGCCATTGAGATTATGGAGGTCAAATACAGATTGCTGAAGATTAACCAAGGTGACCAGACACTCAAAATTGTAAGAGATGACTACTGTGACAAAGTTTGTTCGCCGAAGTTTGGGGATACCAAACTCAATTCCGAACTTTTTGACTATGTTATCGGGTCTTCGGACGTCACTTTACTCTATGATTGTACTTCTAGCTCAAAAGTTGCAGATTTCAGCTGCCCCGATGATGAAGCTTATGAGGATGTGGCCGCAATACCTGCTGATGTCCCGCGACCTCCGATCTGTAAGTCAAAAGTGGTTGTTCGGATTTGTGATGCAACGGGTTTCGGAATCTTCAATATACAGAACGCGACGGCGCTTGAAGCTGTAGTGAGGGAAGGGTTTGAGGTGAAGTATAAGGTGGATAGTGAAAAATGCGGTGAGTGTGTTAGTTCAAAGGGTGTTTGTGGCTATGATTGGAATTTGAATGAAACTGTTTGTCATTGCGCAAATCAAGCTTCTGAGTCCCGGACTTGTTCCGCCGCCACAGCAGAGGCCATAGACAATCCAGCAGTAGTGCCACCGCCAGCTAAAGGTATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

316

Amino Acids

35.26

Weight (kDa)

4.86

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	82 - 146	1.8e-16	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	214 - 285	5.5e-13	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66880 AT1G66880 AT1G66880 AT5G38210 AT5G38210 AT5G38210
fragaria_vesca	FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540
malus_domestica	MD00G1204100.v1.1 MD09G1255300.v1.1 MD17G1247800.v1.1 MD17G1248000.v1.1
prunus_persica	Prupe.3G146500_v2.0.a1 Prupe.3G146700_v2.0.a1
pyrus_communis	pycom09g17110 pycom17g24910 pycom17g25040
rosa_chinensis	RchiOBHm_Chr6g0273041
rosa_laevigata	RLG00000013645
rosa_multiflora	Rmu_ssc0000387.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195700
rosa_rugosa	Rorug06G0072500
rosa_samantha	Rh6AG188100 Rh6BG191500 Rh6CG190600 Rh6DG182000
rosa_wichuraiana	Rw6G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	531
Acc16I	TGCGCA	1 cut(s)	850
Acc36I	ACCTGC	1 cut(s)	628
AccII	CGCG	3 cut(s)	254, 634, 713
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	8 cut(s)	321, 363, 612, 632, 780, 882, 885, 926
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	3 cut(s)	50, 157, 823
AcuI	CTGAAG	2 cut(s)	356, 419
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	2 cut(s)	21, 550
AfiI	CCNNNNNNNGG	3 cut(s)	296, 473, 935
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	5 cut(s)	46, 700, 725, 798, 829
AjnI	CCWGG	1 cut(s)	161
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	8 cut(s)	225, 340, 558, 579, 596, 728, 860, 932
AluI	AGCT	8 cut(s)	225, 340, 558, 579, 596, 728, 860, 932
Alw26I	GTCTC	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	3 cut(s)	308, 609, 897
ApeKI	GCWGC	1 cut(s)	579
ApoI	RAATTY	3 cut(s)	50, 157, 823
AspLEI	GCGC	2 cut(s)	721, 851
AsuC2I	CCSGG	1 cut(s)	871
AsuHPI	GGTGA	3 cut(s)	425, 763, 794
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	732
BciT130I	CCWGG	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	871
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	729
BfoI	RGCGCY	1 cut(s)	722
BfuAI	ACCTGC	1 cut(s)	628
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	322, 580, 612, 885
BlsI	GCNGC	4 cut(s)	323, 581, 613, 886
Bme1390I	CCNGG	2 cut(s)	163, 871
BmrFI	CCNGG	2 cut(s)	163, 871
BmsI	GCATC	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	871
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 71, 77, 95, 101, 107
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 473, 935
Bse3DI	GCAATG	1 cut(s)	844
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	2 cut(s)	176, 610
BseLI	CCNNNNNNNGG	3 cut(s)	296, 473, 935
BseMI	GCAATG	1 cut(s)	844
BseMII	CTCAG	1 cut(s)	855
BseXI	GCAGC	1 cut(s)	566
Bsh1236I	CGCG	3 cut(s)	254, 634, 713
BshFI	GGCC	3 cut(s)	310, 611, 899
BsiSI	CCGG	3 cut(s)	311, 329, 871
BslFI	GGGAC	2 cut(s)	614, 853
BslI	CCNNNNNNNGG	3 cut(s)	296, 473, 935
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	2 cut(s)	614, 853
BsnI	GGCC	3 cut(s)	310, 611, 899
Bsp13I	TCCGGA	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	642
BspACI	CCGC	8 cut(s)	321, 363, 612, 632, 780, 882, 885, 926
BspANI	GGCC	3 cut(s)	310, 611, 899
BspCNI	CTCAG	1 cut(s)	856
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	3 cut(s)	254, 634, 713
BspMI	ACCTGC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	844
BsrGI	TGTACA	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	1 cut(s)	642
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	263, 449, 838
BstACI	GRCGYC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	930
BstDEI	CTNAG	1 cut(s)	864
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	176, 610
BstFNI	CGCG	3 cut(s)	254, 634, 713
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	2 cut(s)	721, 851
BstKTI	GATC	1 cut(s)	645
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	642
BstMWI	GCNNNNNNNGC	4 cut(s)	620, 725, 857, 890
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	161, 869
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	3 cut(s)	254, 634, 713
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	310, 611, 899
BtsCI	GGATG	2 cut(s)	176, 610
BtsIMutI	CAGTG	1 cut(s)	259
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	930
CfoI	GCGC	2 cut(s)	721, 851
Csp6I	GTAC	2 cut(s)	20, 549
CviAII	CATG	1 cut(s)	345
CviQI	GTAC	2 cut(s)	20, 549
DdeI	CTNAG	1 cut(s)	864
DpnI	GATC	1 cut(s)	644
DpnII	GATC	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	409
Eco57I	CTGAAG	2 cut(s)	356, 419
Eco91I	GGTNACC	1 cut(s)	413
EcoO65I	GGTNACC	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	348
FaqI	GGGAC	2 cut(s)	614, 853
FatI	CATG	1 cut(s)	344
FauI	CCCGC	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	322, 580, 612, 885
FokI	GGATG	2 cut(s)	163, 617
Fsp4HI	GCNGC	4 cut(s)	322, 580, 612, 885
FspBI	CTAG	1 cut(s)	555
FspI	TGCGCA	1 cut(s)	850
GlaI	GCGC	2 cut(s)	720, 850
GluI	GCNGC	4 cut(s)	322, 580, 612, 885
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	3 cut(s)	310, 611, 899
HapII	CCGG	3 cut(s)	311, 329, 871
HhaI	GCGC	2 cut(s)	721, 851
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	1 cut(s)	348
Hin6I	GCGC	2 cut(s)	719, 849
HinP1I	GCGC	2 cut(s)	719, 849
HindIII	AAGCTT	3 cut(s)	223, 594, 858
HinfI	GANTC	3 cut(s)	230, 693, 866
HpaII	CCGG	3 cut(s)	311, 329, 871
HphI	GGTGA	3 cut(s)	425, 763, 794
Hpy166II	GTNNAC	2 cut(s)	22, 63
Hpy188I	TCNGA	6 cut(s)	496, 526, 642, 669, 692, 865
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	2 cut(s)	22, 63
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	3 cut(s)	199, 300, 734
HpyCH4III	ACNGT	3 cut(s)	263, 449, 838
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	2 cut(s)	569, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	620, 725, 857, 890
HpyF3I	CTNAG	1 cut(s)	864
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	1 cut(s)	348
HspAI	GCGC	2 cut(s)	719, 849
Kpn2I	TCCGGA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	642
LpnPI	CCDG	9 cut(s)	148, 175, 324, 342, 431, 633, 884, 924, 942
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	6 cut(s)	71, 248, 358, 413, 449, 529
MalI	GATC	1 cut(s)	644
MboI	GATC	1 cut(s)	642
MboII	GAAGA	4 cut(s)	163, 412, 513, 688
MluCI	AATT	7 cut(s)	50, 112, 157, 241, 429, 490, 823
MluI	ACGCGT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	875
MmeI	TCCRAC	3 cut(s)	102, 114, 120
MnlI	CCTC	7 cut(s)	229, 373, 595, 648, 729, 742, 889
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	2 cut(s)	111, 405
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	579
MspI	CCGG	3 cut(s)	311, 329, 871
MspR9I	CCNGG	2 cut(s)	163, 871
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	3 cut(s)	254, 634, 713
MwoI	GCNNNNNNNGC	4 cut(s)	620, 725, 857, 890
NciI	CCSGG	1 cut(s)	871
NdeII	GATC	1 cut(s)	642
NlaIII	CATG	1 cut(s)	348
NmuCI	GTSAC	4 cut(s)	71, 413, 449, 529
NsbI	TGCGCA	1 cut(s)	850
NspI	RCATGY	1 cut(s)	348
OliI	CACNNNNGTG	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	230, 693
PfoI	TCCNGGA	1 cut(s)	869
PkrI	GCNGC	4 cut(s)	323, 581, 613, 886
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
Psp6I	CCWGG	1 cut(s)	161
PspEI	GGTNACC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	579
RsaI	GTAC	2 cut(s)	21, 550
RsaNI	GTAC	2 cut(s)	20, 549
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	111, 405
SatI	GCNGC	4 cut(s)	322, 580, 612, 885
Sau3AI	GATC	1 cut(s)	642
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	2 cut(s)	163, 871
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	7 cut(s)	50, 112, 157, 241, 429, 490, 823
SsiI	CCGC	8 cut(s)	321, 363, 612, 632, 780, 882, 885, 926
SspMI	CTAG	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	161, 869
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	3 cut(s)	263, 449, 838
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	2 cut(s)	228, 350
TasI	AATT	7 cut(s)	50, 112, 157, 241, 429, 490, 823
TatI	WGTACW	2 cut(s)	19, 548
TauI	GCSGC	3 cut(s)	324, 614, 887
TfiI	GAWTC	2 cut(s)	230, 693
Tru1I	TTAA	2 cut(s)	111, 405
Tru9I	TTAA	2 cut(s)	111, 405
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	4 cut(s)	71, 413, 449, 529
TseI	GCWGC	1 cut(s)	579
Tsp45I	GTSAC	4 cut(s)	71, 413, 449, 529
TspDTI	ATGAA	6 cut(s)	105, 110, 170, 190, 606, 846
TspRI	CASTG	1 cut(s)	266
XapI	RAATTY	3 cut(s)	50, 157, 823
XceI	RCATGY	1 cut(s)	348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XspI	CTAG	1 cut(s)	555
ZraI	GACGTC	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.