DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G66730 |
| fragaria_vesca | FvH4_1g29000 FvH4_1g29000 FvH4_1g29000 |
| malus_domestica | MD00G1054100.v1.1 |
| prunus_persica | Prupe.3G150300_v2.0.a1 |
| pyrus_communis | pycom17g25560 |
| rosa_chinensis | RchiOBHm_Chr3g0493691 RchiOBHm_Chr3g0493951 |
| rosa_laevigata | RLG00000022694 |
| rosa_roxburghii | Rroxscaffold_6G00391370 |
| rosa_rugosa | Rorug03G0263400 Rorug03G0263500 Rorug03G0263600 |
| rosa_samantha | Rh3AG312500 Rh3AG313200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 861, 987 |
| Acc16I | TGCGCA | 1 cut(s) | 218 |
| AccI | GTMKAC | 1 cut(s) | 438 |
| AccII | CGCG | 2 cut(s) | 183, 1107 |
| AciI | CCGC | 3 cut(s) | 323, 505, 1107 |
| AcsI | RAATTY | 2 cut(s) | 189, 649 |
| AcuI | CTGAAG | 3 cut(s) | 149, 894, 1200 |
| AcvI | CACGTG | 2 cut(s) | 389, 735 |
| AfaI | GTAC | 3 cut(s) | 727, 836, 1133 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1106 |
| AflIII | ACRYGT | 2 cut(s) | 155, 732 |
| AgsI | TTSAA | 7 cut(s) | 140, 374, 526, 563, 587, 647, 772 |
| AjiI | CACGTC | 1 cut(s) | 1225 |
| AjnI | CCWGG | 1 cut(s) | 1074 |
| AluBI | AGCT | 8 cut(s) | 133, 149, 361, 550, 636, 803, 1178, 1190 |
| AluI | AGCT | 8 cut(s) | 133, 149, 361, 550, 636, 803, 1178, 1190 |
| Alw26I | GTCTC | 5 cut(s) | 216, 747, 863, 948, 1068 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 490 |
| ApeKI | GCWGC | 3 cut(s) | 636, 1079, 1190 |
| ApoI | RAATTY | 2 cut(s) | 189, 649 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 941 |
| AspLEI | GCGC | 3 cut(s) | 183, 185, 219 |
| AsuC2I | CCSGG | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 1 cut(s) | 1064 |
| BbrPI | CACGTG | 2 cut(s) | 389, 735 |
| BbvI | GCAGC | 3 cut(s) | 623, 1066, 1177 |
| BccI | CCATC | 5 cut(s) | 167, 200, 724, 1108, 1213 |
| BceAI | ACGGC | 1 cut(s) | 879 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 418, 452 |
| BciT130I | CCWGG | 1 cut(s) | 1076 |
| BcnI | CCSGG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 5 cut(s) | 216, 747, 863, 948, 1068 |
| BfaI | CTAG | 1 cut(s) | 317 |
| BfmI | CTRYAG | 1 cut(s) | 1083 |
| BglII | AGATCT | 2 cut(s) | 262, 960 |
| BisI | GCNGC | 5 cut(s) | 506, 637, 1080, 1108, 1191 |
| BlsI | GCNGC | 5 cut(s) | 507, 638, 1081, 1109, 1192 |
| Bme1390I | CCNGG | 2 cut(s) | 72, 1076 |
| BmgBI | CACGTC | 1 cut(s) | 1225 |
| BmrFI | CCNGG | 2 cut(s) | 72, 1076 |
| BmsI | GCATC | 6 cut(s) | 289, 293, 310, 586, 990, 1105 |
| BpuMI | CCSGG | 1 cut(s) | 72 |
| BsaAI | YACGTR | 2 cut(s) | 389, 735 |
| BsaI | GGTCTC | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 3 cut(s) | 57, 570, 1127 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1048, 1078 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1106 |
| Bse1I | ACTGG | 1 cut(s) | 609 |
| Bse3DI | GCAATG | 2 cut(s) | 69, 1200 |
| BseBI | CCWGG | 1 cut(s) | 1076 |
| BseDI | CCNNGG | 3 cut(s) | 57, 570, 1127 |
| BseGI | GGATG | 1 cut(s) | 1096 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1106 |
| BseMI | GCAATG | 2 cut(s) | 69, 1200 |
| BseMII | CTCAG | 3 cut(s) | 858, 921, 987 |
| BseNI | ACTGG | 1 cut(s) | 609 |
| BsePI | GCGCGC | 1 cut(s) | 181 |
| BseXI | GCAGC | 3 cut(s) | 623, 1066, 1177 |
| BseYI | CCCAGC | 2 cut(s) | 490, 550 |
| BsgI | GTGCAG | 1 cut(s) | 1068 |
| Bsh1236I | CGCG | 2 cut(s) | 183, 1107 |
| BsiSI | CCGG | 1 cut(s) | 71 |
| BslFI | GGGAC | 2 cut(s) | 251, 776 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1106 |
| BsmAI | GTCTC | 5 cut(s) | 216, 747, 863, 948, 1068 |
| BsmFI | GGGAC | 2 cut(s) | 251, 776 |
| Bso31I | GGTCTC | 1 cut(s) | 216 |
| Bsp143I | GATC | 5 cut(s) | 102, 262, 630, 960, 1116 |
| BspACI | CCGC | 3 cut(s) | 323, 505, 1107 |
| BspCNI | CTCAG | 3 cut(s) | 859, 922, 988 |
| BspFNI | CGCG | 2 cut(s) | 183, 1107 |
| BspTNI | GGTCTC | 1 cut(s) | 216 |
| BsrDI | GCAATG | 2 cut(s) | 69, 1200 |
| BsrI | ACTGG | 1 cut(s) | 609 |
| BssECI | CCNNGG | 3 cut(s) | 57, 570, 1127 |
| BssHII | GCGCGC | 1 cut(s) | 181 |
| BssMI | GATC | 5 cut(s) | 102, 262, 630, 960, 1116 |
| BssT1I | CCWWGG | 3 cut(s) | 57, 570, 1127 |
| Bst2UI | CCWGG | 1 cut(s) | 1076 |
| Bst4CI | ACNGT | 3 cut(s) | 839, 1060, 1144 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 596 |
| BstBAI | YACGTR | 2 cut(s) | 389, 735 |
| BstC8I | GCNNGC | 4 cut(s) | 96, 123, 183, 829 |
| BstDEI | CTNAG | 3 cut(s) | 867, 930, 996 |
| BstF5I | GGATG | 1 cut(s) | 1096 |
| BstFNI | CGCG | 2 cut(s) | 183, 1107 |
| BstHHI | GCGC | 3 cut(s) | 183, 185, 219 |
| BstKTI | GATC | 5 cut(s) | 105, 265, 633, 963, 1119 |
| BstMAI | GTCTC | 5 cut(s) | 216, 747, 863, 948, 1068 |
| BstMBI | GATC | 5 cut(s) | 102, 262, 630, 960, 1116 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 511, 596, 623 |
| BstNI | CCWGG | 1 cut(s) | 1076 |
| BstNSI | RCATGY | 2 cut(s) | 159, 858 |
| BstSCI | CCNGG | 2 cut(s) | 70, 1074 |
| BstSFI | CTRYAG | 1 cut(s) | 1083 |
| BstUI | CGCG | 2 cut(s) | 183, 1107 |
| BstV1I | GCAGC | 3 cut(s) | 623, 1066, 1177 |
| BstX2I | RGATCY | 2 cut(s) | 262, 960 |
| BstYI | RGATCY | 2 cut(s) | 262, 960 |
| BtrI | CACGTC | 1 cut(s) | 1225 |
| BtsCI | GGATG | 1 cut(s) | 1096 |
| BtsIMutI | CAGTG | 5 cut(s) | 125, 616, 927, 1065, 1140 |
| Cac8I | GCNNGC | 4 cut(s) | 96, 123, 183, 829 |
| CaiI | CAGNNNCTG | 1 cut(s) | 490 |
| CfoI | GCGC | 3 cut(s) | 183, 185, 219 |
| CseI | GACGC | 2 cut(s) | 710, 877 |
| Csp6I | GTAC | 3 cut(s) | 726, 835, 1132 |
| CviAII | CATG | 8 cut(s) | 25, 156, 466, 666, 760, 809, 855, 901 |
| CviQI | GTAC | 3 cut(s) | 726, 835, 1132 |
| DdeI | CTNAG | 3 cut(s) | 867, 930, 996 |
| DpnI | GATC | 5 cut(s) | 104, 264, 632, 962, 1118 |
| DpnII | GATC | 5 cut(s) | 102, 262, 630, 960, 1116 |
| Eco130I | CCWWGG | 3 cut(s) | 57, 570, 1127 |
| Eco31I | GGTCTC | 1 cut(s) | 216 |
| Eco32I | GATATC | 1 cut(s) | 463 |
| Eco57I | CTGAAG | 3 cut(s) | 149, 894, 1200 |
| Eco72I | CACGTG | 2 cut(s) | 389, 735 |
| EcoRII | CCWGG | 1 cut(s) | 1074 |
| EcoRV | GATATC | 1 cut(s) | 463 |
| EcoT14I | CCWWGG | 3 cut(s) | 57, 570, 1127 |
| EcoT22I | ATGCAT | 1 cut(s) | 286 |
| ErhI | CCWWGG | 3 cut(s) | 57, 570, 1127 |
| FaeI | CATG | 8 cut(s) | 28, 159, 469, 669, 763, 812, 858, 904 |
| FaqI | GGGAC | 2 cut(s) | 251, 776 |
| FatI | CATG | 8 cut(s) | 24, 155, 465, 665, 759, 808, 854, 900 |
| FblI | GTMKAC | 1 cut(s) | 438 |
| Fnu4HI | GCNGC | 5 cut(s) | 506, 637, 1080, 1108, 1191 |
| FokI | GGATG | 1 cut(s) | 1083 |
| Fsp4HI | GCNGC | 5 cut(s) | 506, 637, 1080, 1108, 1191 |
| FspBI | CTAG | 1 cut(s) | 317 |
| FspI | TGCGCA | 1 cut(s) | 218 |
| GlaI | GCGC | 3 cut(s) | 182, 184, 218 |
| GluI | GCNGC | 5 cut(s) | 506, 637, 1080, 1108, 1191 |
| GsaI | CCCAGC | 2 cut(s) | 494, 554 |
| HapII | CCGG | 1 cut(s) | 71 |
| HgaI | GACGC | 2 cut(s) | 710, 877 |
| HhaI | GCGC | 3 cut(s) | 183, 185, 219 |
| Hin1II | CATG | 8 cut(s) | 28, 159, 469, 669, 763, 812, 858, 904 |
| Hin6I | GCGC | 3 cut(s) | 181, 183, 217 |
| HinP1I | GCGC | 3 cut(s) | 181, 183, 217 |
| HincII | GTYRAC | 4 cut(s) | 54, 246, 439, 700 |
| HindII | GTYRAC | 4 cut(s) | 54, 246, 439, 700 |
| HindIII | AAGCTT | 1 cut(s) | 147 |
| HinfI | GANTC | 5 cut(s) | 67, 242, 776, 917, 1122 |
| HpaII | CCGG | 1 cut(s) | 71 |
| HphI | GGTGA | 1 cut(s) | 1064 |
| Hpy166II | GTNNAC | 5 cut(s) | 54, 246, 439, 700, 1072 |
| Hpy188I | TCNGA | 4 cut(s) | 267, 916, 997, 1121 |
| Hpy188III | TCNNGA | 9 cut(s) | 106, 228, 252, 260, 374, 644, 782, 951, 969 |
| Hpy8I | GTNNAC | 5 cut(s) | 54, 246, 439, 700, 1072 |
| HpyAV | CCTTC | 2 cut(s) | 27, 665 |
| HpyCH4III | ACNGT | 3 cut(s) | 839, 1060, 1144 |
| HpyCH4IV | ACGT | 4 cut(s) | 388, 620, 734, 1224 |
| HpyCH4V | TGCA | 7 cut(s) | 98, 284, 302, 335, 1049, 1096, 1193 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 511, 596, 623 |
| HpyF3I | CTNAG | 3 cut(s) | 867, 930, 996 |
| HpySE526I | ACGT | 4 cut(s) | 388, 620, 734, 1224 |
| Hsp92II | CATG | 8 cut(s) | 28, 159, 469, 669, 763, 812, 858, 904 |
| HspAI | GCGC | 3 cut(s) | 181, 183, 217 |
| Kzo9I | GATC | 5 cut(s) | 102, 262, 630, 960, 1116 |
| LmnI | GCTCC | 1 cut(s) | 800 |
| Lsp1109I | GCAGC | 3 cut(s) | 623, 1066, 1177 |
| LweI | GCATC | 6 cut(s) | 289, 293, 310, 586, 990, 1105 |
| MaeI | CTAG | 1 cut(s) | 317 |
| MaeII | ACGT | 4 cut(s) | 388, 620, 734, 1224 |
| MaeIII | GTNAC | 2 cut(s) | 353, 384 |
| MalI | GATC | 5 cut(s) | 104, 264, 632, 962, 1118 |
| MboI | GATC | 5 cut(s) | 102, 262, 630, 960, 1116 |
| MboII | GAAGA | 4 cut(s) | 39, 887, 1193, 1228 |
| MfeI | CAATTG | 2 cut(s) | 582, 795 |
| MflI | RGATCY | 2 cut(s) | 262, 960 |
| MluCI | AATT | 9 cut(s) | 189, 197, 377, 414, 576, 582, 649, 795, 1237 |
| MlyI | GAGTC | 3 cut(s) | 251, 770, 911 |
| MmeI | TCCRAC | 1 cut(s) | 19 |
| MnlI | CCTC | 9 cut(s) | 32, 319, 389, 510, 673, 757, 1003, 1037, 1156 |
| Mph1103I | ATGCAT | 1 cut(s) | 286 |
| MroXI | GAANNNNTTC | 1 cut(s) | 941 |
| MseI | TTAA | 5 cut(s) | 84, 270, 279, 605, 684 |
| MslI | CAYNNNNRTG | 1 cut(s) | 932 |
| MspA1I | CMGCKG | 2 cut(s) | 636, 1178 |
| MspI | CCGG | 1 cut(s) | 71 |
| MspR9I | CCNGG | 2 cut(s) | 72, 1076 |
| MunI | CAATTG | 2 cut(s) | 582, 795 |
| MvaI | CCWGG | 1 cut(s) | 1076 |
| MvnI | CGCG | 2 cut(s) | 183, 1107 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 511, 596, 623 |
| NciI | CCSGG | 1 cut(s) | 72 |
| NdeII | GATC | 5 cut(s) | 102, 262, 630, 960, 1116 |
| NlaIII | CATG | 8 cut(s) | 28, 159, 469, 669, 763, 812, 858, 904 |
| NmuCI | GTSAC | 2 cut(s) | 353, 384 |
| NsbI | TGCGCA | 1 cut(s) | 218 |
| NsiI | ATGCAT | 1 cut(s) | 286 |
| NspI | RCATGY | 2 cut(s) | 159, 858 |
| PauI | GCGCGC | 1 cut(s) | 181 |
| PciI | ACATGT | 1 cut(s) | 155 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 444 |
| PdmI | GAANNNNTTC | 1 cut(s) | 941 |
| PfeI | GAWTC | 2 cut(s) | 67, 1122 |
| PfoI | TCCNGGA | 1 cut(s) | 70 |
| PkrI | GCNGC | 5 cut(s) | 507, 638, 1081, 1109, 1192 |
| PleI | GAGTC | 3 cut(s) | 250, 770, 911 |
| PmaCI | CACGTG | 2 cut(s) | 389, 735 |
| PmlI | CACGTG | 2 cut(s) | 389, 735 |
| PpsI | GAGTC | 3 cut(s) | 250, 770, 911 |
| Ppu21I | YACGTR | 2 cut(s) | 389, 735 |
| PscI | ACATGT | 1 cut(s) | 155 |
| PsiI | TTATAA | 2 cut(s) | 861, 987 |
| Psp6I | CCWGG | 1 cut(s) | 1074 |
| PspCI | CACGTG | 2 cut(s) | 389, 735 |
| PspFI | CCCAGC | 2 cut(s) | 490, 550 |
| PspGI | CCWGG | 1 cut(s) | 1074 |
| PstNI | CAGNNNCTG | 1 cut(s) | 490 |
| PsuI | RGATCY | 2 cut(s) | 262, 960 |
| PteI | GCGCGC | 1 cut(s) | 181 |
| PvuII | CAGCTG | 2 cut(s) | 636, 1178 |
| RsaI | GTAC | 3 cut(s) | 727, 836, 1133 |
| RsaNI | GTAC | 3 cut(s) | 726, 835, 1132 |
| RseI | CAYNNNNRTG | 1 cut(s) | 932 |
| SalI | GTCGAC | 1 cut(s) | 437 |
| SaqAI | TTAA | 5 cut(s) | 84, 270, 279, 605, 684 |
| SatI | GCNGC | 5 cut(s) | 506, 637, 1080, 1108, 1191 |
| Sau3AI | GATC | 5 cut(s) | 102, 262, 630, 960, 1116 |
| SchI | GAGTC | 3 cut(s) | 251, 770, 911 |
| ScrFI | CCNGG | 2 cut(s) | 72, 1076 |
| SfaNI | GCATC | 6 cut(s) | 289, 293, 310, 586, 990, 1105 |
| SfcI | CTRYAG | 1 cut(s) | 1083 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 932 |
| Sse9I | AATT | 9 cut(s) | 189, 197, 377, 414, 576, 582, 649, 795, 1237 |
| SsiI | CCGC | 3 cut(s) | 323, 505, 1107 |
| SspI | AATATT | 1 cut(s) | 521 |
| SspMI | CTAG | 1 cut(s) | 317 |
| StyD4I | CCNGG | 2 cut(s) | 70, 1074 |
| StyI | CCWWGG | 3 cut(s) | 57, 570, 1127 |
| TaaI | ACNGT | 3 cut(s) | 839, 1060, 1144 |
| TaiI | ACGT | 4 cut(s) | 391, 623, 737, 1227 |
| TaqI | TCGA | 2 cut(s) | 438, 1115 |
| TasI | AATT | 9 cut(s) | 189, 197, 377, 414, 576, 582, 649, 795, 1237 |
| TauI | GCSGC | 2 cut(s) | 508, 1110 |
| TfiI | GAWTC | 2 cut(s) | 67, 1122 |
| Tru1I | TTAA | 5 cut(s) | 84, 270, 279, 605, 684 |
| Tru9I | TTAA | 5 cut(s) | 84, 270, 279, 605, 684 |
| TscAI | CASTG | 5 cut(s) | 132, 616, 934, 1065, 1147 |
| TseFI | GTSAC | 2 cut(s) | 353, 384 |
| TseI | GCWGC | 3 cut(s) | 636, 1079, 1190 |
| Tsp45I | GTSAC | 2 cut(s) | 353, 384 |
| TspDTI | ATGAA | 2 cut(s) | 642, 950 |
| TspRI | CASTG | 5 cut(s) | 132, 616, 934, 1065, 1147 |
| XapI | RAATTY | 2 cut(s) | 189, 649 |
| XceI | RCATGY | 2 cut(s) | 159, 858 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 801, 1029 |
| XmiI | GTMKAC | 1 cut(s) | 438 |
| XmnI | GAANNNNTTC | 1 cut(s) | 941 |
| XspI | CTAG | 1 cut(s) | 317 |
| Zsp2I | ATGCAT | 1 cut(s) | 286 |