Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008291

Physical Location & Seq

Genomic Coordinates Forward (+)

25075232 .. 25076919

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAAGTTGTACTATTCTCTCCCTCTTCACATTCTTTGTTTCTCTGTCGTATTTCTACCTTCCTTCATCATGTTCCTCCTCCACAGACTCCTTTGTCTTCGGAGGCTGCACGCAGGAAAAGTACTCACCCAACTCACCCTACGAGTCCAATCTCAACTCACTCCTCACCTCCTTAGTTAACTCAGCTACCTATTCCTCCTACAACAACTACACCATCATGGGCTCAAGCACACAAGACGTAGTCTACGGGCTGTACCAATGCCGCGGCGACCTTGCCATGCCCGACTGCGCCACCTGCGTTGCGCGTGCAGTGAGCCAGGTTGGACACCTCTGCGCCTACACTTCCGGTGGCGCTCTTCAGCTACAAGGATGCTACATCAAGTATGACAACACTACTTTCTTGGGTCTGGAGGATAAGACTGTAGTGTTGAAGAAATGTGGACCGTCGATTGGGTATGATGCTGATGGAATGAGCCGTAGAGATTCAGTGTTGGCTGCCTTGGTGGGGTCTAGCGGACCGTACCGGGTGGGTGGCTCAGGGGACGTGCAAGGTTTGGCTCAATGCGTCGGCGATTTAAGCTTGGCCGAGTGTGAGGATTGCATATCAGAGGCAATAGGACGGGTGAAAAGTGAGTGTGGTGGCGCAGTTTATGGTGATATGTTCTTGGCCAAGTGCTACGCTAGGTACTCAACTGGTGGATCTGATGTTTACACCAAGGTCCATCATCATGATAAATCCGCCAGTGATGGTGAGAAGACATTTGCTGTGATAATTGGATTATTGGCTGGGGTTGCCCTACTCATTGTCTTTCTTAGTTTCATCAGAAAGATTTTTGGGGGCAATGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

285

Amino Acids

30.1

Weight (kDa)

5.54

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	37 - 131	7.8e-21	Salt stress response/antifungal
Stress-antifung	PF01657	177 - 232	4.8e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37660 AT5G37660
fragaria_vesca	FvH4_1g30260 FvH4_1g30260
malus_domestica	MD09G1271000.v1.1 MD17G1269100.v1.1
prunus_persica	Prupe.3G017500_v2.0.a1
pyrus_communis	pycom09g18200 pycom17g26780
rosa_chinensis	RchiOBHm_Chr3g0491121 RchiOBHm_Chr3g0491131 RchiOBHm_Chr3g0491141
rosa_laevigata	RLG00000022860 RLG00000022861
rosa_multiflora	Rmu_sc0005038.1_g000032
rosa_roxburghii	Rroxscaffold_6G00393130
rosa_rugosa	Rorug03G0246400
rosa_samantha	Rh3AG296600 Rh3AG296700 Rh3BG332700 Rh3CG329900 Rh3DG330400
rosa_wichuraiana	Rw3G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
AasI	GACNNNNNNGTC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	2 cut(s)	267, 307
AciI	CCGC	4 cut(s)	265, 267, 516, 741
AclWI	GGATC	1 cut(s)	709
AcoI	YGGCCR	2 cut(s)	585, 669
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	5 cut(s)	13, 125, 257, 524, 689
AfiI	CCNNNNNNNGG	2 cut(s)	452, 507
AgsI	TTSAA	1 cut(s)	433
AjiI	CACGTC	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	188, 364, 582
AluI	AGCT	3 cut(s)	188, 364, 582
AlwI	GGATC	1 cut(s)	709
AoxI	GGCC	2 cut(s)	585, 669
ApeKI	GCWGC	2 cut(s)	108, 497
AspLEI	GCGC	5 cut(s)	293, 307, 338, 356, 647
AspS9I	GGNCC	3 cut(s)	443, 518, 721
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	6 cut(s)	120, 129, 160, 637, 668, 764
AvaII	GGWCC	3 cut(s)	443, 518, 721
BalI	TGGCCA	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	91, 764
BbvI	GCAGC	2 cut(s)	95, 484
BccI	CCATC	4 cut(s)	224, 461, 732, 743
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	527
BfaI	CTAG	2 cut(s)	513, 684
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	109, 265, 268, 498
BlsI	GCNGC	4 cut(s)	110, 266, 269, 499
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	320, 527
Bme18I	GGWCC	3 cut(s)	443, 518, 721
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	443, 518, 721
BmrFI	CCNGG	2 cut(s)	320, 527
BmsI	GCATC	2 cut(s)	362, 451
BpiI	GAAGAC	2 cut(s)	91, 764
BpmI	CTGGAG	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	527
BsaJI	CCNNGG	3 cut(s)	265, 501, 717
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 507
Bse1I	ACTGG	2 cut(s)	700, 744
Bse3DI	GCAATG	1 cut(s)	850
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	265, 501, 717
BseGI	GGATG	1 cut(s)	377
BseLI	CCNNNNNNNGG	2 cut(s)	452, 507
BseMI	GCAATG	1 cut(s)	850
BseMII	CTCAG	2 cut(s)	198, 552
BseNI	ACTGG	2 cut(s)	700, 744
BseRI	GAGGAG	2 cut(s)	70, 155
BseXI	GCAGC	2 cut(s)	95, 484
BseYI	CCCAGC	1 cut(s)	788
BsgI	GTGCAG	2 cut(s)	94, 330
Bsh1236I	CGCG	2 cut(s)	267, 307
BshFI	GGCC	2 cut(s)	587, 671
BsiSI	CCGG	2 cut(s)	348, 526
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	452, 507
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	587, 671
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	701
BspACI	CCGC	4 cut(s)	265, 267, 516, 741
BspANI	GGCC	2 cut(s)	587, 671
BspCNI	CTCAG	2 cut(s)	197, 551
BspFNI	CGCG	2 cut(s)	267, 307
BspHI	TCATGA	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	700, 744
BssECI	CCNNGG	3 cut(s)	265, 501, 717
BssMI	GATC	1 cut(s)	701
BssT1I	CCWWGG	2 cut(s)	501, 717
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	3 cut(s)	424, 447, 522
Bst6I	CTCTTC	2 cut(s)	32, 363
BstC8I	GCNNGC	2 cut(s)	113, 309
BstDEI	CTNAG	4 cut(s)	175, 184, 538, 815
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	377
BstFNI	CGCG	2 cut(s)	267, 307
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	5 cut(s)	293, 307, 338, 356, 647
BstKTI	GATC	1 cut(s)	704
BstMBI	GATC	1 cut(s)	701
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 579, 794
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	2 cut(s)	318, 525
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	2 cut(s)	267, 307
BstV1I	GCAGC	2 cut(s)	95, 484
BstV2I	GAAGAC	2 cut(s)	91, 764
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	587, 671
BtgI	CCRYGG	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	377
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	318, 495, 751
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	113, 309
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	5 cut(s)	293, 307, 338, 356, 647
Cfr13I	GGNCC	3 cut(s)	443, 518, 721
Cfr42I	CCGCGG	1 cut(s)	268
CpoI	CGGWCCG	1 cut(s)	518
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	5 cut(s)	12, 124, 256, 523, 688
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CspI	CGGWCCG	1 cut(s)	518
CviAII	CATG	4 cut(s)	72, 220, 280, 731
CviQI	GTAC	5 cut(s)	12, 124, 256, 523, 688
DdeI	CTNAG	4 cut(s)	175, 184, 538, 815
DpnI	GATC	1 cut(s)	703
DpnII	GATC	1 cut(s)	701
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	2 cut(s)	585, 669
Eam1104I	CTCTTC	2 cut(s)	32, 363
EarI	CTCTTC	2 cut(s)	32, 363
EciI	GGCGGA	1 cut(s)	730
Eco130I	CCWWGG	2 cut(s)	501, 717
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	3 cut(s)	443, 518, 721
Eco57I	CTGAAG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	501, 717
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	2 cut(s)	501, 717
FaeI	CATG	4 cut(s)	75, 223, 283, 734
FaiI	YATR	9 cut(s)	73, 221, 281, 387, 459, 605, 654, 662, 732
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	4 cut(s)	71, 219, 279, 730
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	109, 265, 268, 498
FokI	GGATG	1 cut(s)	384
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	109, 265, 268, 498
FspBI	CTAG	2 cut(s)	513, 684
GlaI	GCGC	5 cut(s)	292, 306, 337, 355, 646
GluI	GCNGC	4 cut(s)	109, 265, 268, 498
GsaI	CCCAGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	587, 671
HapII	CCGG	2 cut(s)	348, 526
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	5 cut(s)	293, 307, 338, 356, 647
Hin1II	CATG	4 cut(s)	75, 223, 283, 734
Hin6I	GCGC	5 cut(s)	291, 305, 336, 354, 645
HinP1I	GCGC	5 cut(s)	291, 305, 336, 354, 645
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	3 cut(s)	89, 146, 485
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	348, 526
HphI	GGTGA	6 cut(s)	120, 129, 160, 637, 668, 764
Hpy166II	GTNNAC	4 cut(s)	181, 247, 443, 712
Hpy188I	TCNGA	4 cut(s)	104, 610, 706, 827
Hpy188III	TCNNGA	2 cut(s)	410, 731
Hpy8I	GTNNAC	4 cut(s)	181, 247, 443, 712
Hpy99I	CGWCG	2 cut(s)	451, 572
HpyAV	CCTTC	2 cut(s)	71, 75
HpyCH4III	ACNGT	3 cut(s)	424, 447, 522
HpyCH4IV	ACGT	2 cut(s)	240, 546
HpyCH4V	TGCA	4 cut(s)	111, 311, 550, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 579, 794
HpyF3I	CTNAG	4 cut(s)	175, 184, 538, 815
HpySE526I	ACGT	2 cut(s)	240, 546
Hsp92II	CATG	4 cut(s)	75, 223, 283, 734
HspAI	GCGC	5 cut(s)	291, 305, 336, 354, 645
KspAI	GTTAAC	1 cut(s)	181
KspI	CCGCGG	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	701
LguI	GCTCTTC	1 cut(s)	363
Lsp1109I	GCAGC	2 cut(s)	95, 484
LweI	GCATC	2 cut(s)	362, 451
MaeI	CTAG	2 cut(s)	513, 684
MaeII	ACGT	2 cut(s)	240, 546
MalI	GATC	1 cut(s)	703
MboI	GATC	1 cut(s)	701
MboII	GAAGA	5 cut(s)	19, 91, 350, 445, 769
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	1 cut(s)	774
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	2 cut(s)	83, 155
MmeI	TCCRAC	1 cut(s)	304
Mox20I	TGGCCA	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	2 cut(s)	180, 578
MslI	CAYNNNNRTG	2 cut(s)	218, 729
Msp20I	TGGCCA	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	348, 526
MspR9I	CCNGG	2 cut(s)	320, 527
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	2 cut(s)	267, 307
MwoI	GCNNNNNNNGC	3 cut(s)	297, 579, 794
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	1 cut(s)	701
NlaIII	CATG	4 cut(s)	75, 223, 283, 734
NmeAIII	GCCGAG	1 cut(s)	613
PagI	TCATGA	1 cut(s)	730
PaqCI	CACCTGC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	110, 266, 269, 499
PleI	GAGTC	2 cut(s)	83, 154
PpsI	GAGTC	2 cut(s)	83, 154
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	318
PspPI	GGNCC	3 cut(s)	443, 518, 721
PsuI	RGATCY	1 cut(s)	701
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	5 cut(s)	13, 125, 257, 524, 689
RsaNI	GTAC	5 cut(s)	12, 124, 256, 523, 688
RseI	CAYNNNNRTG	2 cut(s)	218, 729
Rsr2I	CGGWCCG	1 cut(s)	518
RsrII	CGGWCCG	1 cut(s)	518
SacII	CCGCGG	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	180, 578
SatI	GCNGC	4 cut(s)	109, 265, 268, 498
Sau3AI	GATC	1 cut(s)	701
Sau96I	GGNCC	3 cut(s)	443, 518, 721
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	2 cut(s)	83, 155
ScrFI	CCNGG	2 cut(s)	320, 527
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	2 cut(s)	362, 451
SfcI	CTRYAG	1 cut(s)	423
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SinI	GGWCC	3 cut(s)	443, 518, 721
SmiMI	CAYNNNNRTG	2 cut(s)	218, 729
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	774
SsiI	CCGC	4 cut(s)	265, 267, 516, 741
SspMI	CTAG	2 cut(s)	513, 684
StyD4I	CCNGG	2 cut(s)	318, 525
StyI	CCWWGG	2 cut(s)	501, 717
TaaI	ACNGT	3 cut(s)	424, 447, 522
TaiI	ACGT	2 cut(s)	243, 549
TaqI	TCGA	1 cut(s)	449
TasI	AATT	1 cut(s)	774
TatI	WGTACW	2 cut(s)	11, 123
TauI	GCSGC	2 cut(s)	267, 270
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	2 cut(s)	180, 578
Tru9I	TTAA	2 cut(s)	180, 578
TscAI	CASTG	3 cut(s)	318, 495, 751
TseI	GCWGC	2 cut(s)	108, 497
TspDTI	ATGAA	2 cut(s)	57, 811
TspRI	CASTG	3 cut(s)	318, 495, 751
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	443, 518, 721
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	2 cut(s)	513, 684
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.