pycom17g26820
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014421
Physical Location & Seq
Forward (+)
25113222 .. 25115379
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 831 bp
ATGGGAAGGCAACCGTGCTGTGACAAAGTTGGGTTGAAGAAGGGACCATGGACAGCTGAAGAGGACAAGAAGCTCATTAAGTTCATCCTCGCCAATGGCCAATGCTGCTGGAGAGCTGTCCCTAAGCTTGCAGGATTATTAAGGTGTGGAAAAAGTTGCAGGCTGAGGTGGACCAATTATCTGAGGCCAGACTTGAAGAGAGGTCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAACAGATGGTCTAAGATTGCCTCTCATCTCCCTGGAAGAACAGATAATGAGATAAAAAATCATTGGAACACCCACATCAAGAAGAAGTTGAGAAAAATGGGGATTGATCCTCTCACCCACAAACCAATTGCTAATGTCAATGATCAAAGCCACCAATCACAAAGTCAAAAACAAAAAGGAGAAGAAGAACAATCTTGTGCAGCTAATGACAGCTTTGACATTGGCCAAAACAACCCTACTCAAGCCAAAGAGGAAGATTCCAAAAACGTGGGAGGTGATGAATTGGATAAAATGGAGTTCTTGATTGATGGATTCTGCATAGATGAAGTTCCACTAATTGAGCCCCATGAGATTTTAGTTCCTTGTGCTCCTTCTTCATCAACCTCTTCATCTTCTTCTTCAAATTCATCATCCATTTTTCTTGAAGACTTGTATCTCCCAGATTTTGAGTGGCCTGACTGTGATTACAGCAACAACAACAACAACAACAACCAGAACAATGACAGCATGGGCTTGTGGGATGATGACTTCAGCAGCTGGGGTCAAGATTCTTGGGCATATGGGCTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

277

Amino Acids

31.23

Weight (kDa)

5.33

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 111 7.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 118 1.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 2 cut(s) 97, 481
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 2 cut(s) 78, 772
AgsI TTSAA 4 cut(s) 37, 196, 660, 683
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 56, 73, 116, 127, 461, 471, 795
AluI AGCT 7 cut(s) 56, 73, 116, 127, 461, 471, 795
Alw21I GWGCWC 1 cut(s) 628
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 795
AoxI GGCC 4 cut(s) 97, 185, 481, 710
ApeKI GCWGC 3 cut(s) 105, 458, 792
ApoI RAATTY 1 cut(s) 661
AspS9I GGNCC 2 cut(s) 44, 171
AsuHPI GGTGA 2 cut(s) 364, 545
AvaII GGWCC 2 cut(s) 44, 171
BalI TGGCCA 2 cut(s) 99, 483
BanII GRGCYC 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 92, 470, 804
BccI CCATC 2 cut(s) 258, 560
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 400
BisI GCNGC 3 cut(s) 106, 459, 793
BlsI GCNGC 3 cut(s) 107, 460, 794
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 44, 171
BmgT120I GGNCC 2 cut(s) 44, 171
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 690
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 2 cut(s) 123, 164
BpuEI CTTGAG 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 47, 289
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 47, 289
BseGI GGATG 3 cut(s) 84, 668, 784
BseMII CTCAG 2 cut(s) 155, 173
BseXI GCAGC 3 cut(s) 92, 470, 804
BseYI CCCAGC 1 cut(s) 795
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 4 cut(s) 99, 187, 483, 712
BsiHKAI GWGCWC 1 cut(s) 628
BslFI GGGAC 2 cut(s) 57, 104
BsmFI GGGAC 2 cut(s) 57, 104
BsnI GGCC 4 cut(s) 99, 187, 483, 712
Bsp1286I GDGCHC 2 cut(s) 603, 628
Bsp143I GATC 3 cut(s) 238, 364, 400
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 4 cut(s) 99, 187, 483, 712
BspCNI CTCAG 2 cut(s) 156, 174
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 47, 289
BssMI GATC 3 cut(s) 238, 364, 400
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 15, 719
Bst6I CTCTTC 4 cut(s) 54, 191, 216, 649
BstC8I GCNNGC 2 cut(s) 129, 161
BstDEI CTNAG 4 cut(s) 123, 164, 182, 270
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 84, 668, 784
BstKTI GATC 3 cut(s) 241, 367, 403
BstMBI GATC 3 cut(s) 238, 364, 400
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 3 cut(s) 92, 470, 804
BstV2I GAAGAC 1 cut(s) 690
BstXI CCANNNNNNTGG 1 cut(s) 526
BsuRI GGCC 4 cut(s) 99, 187, 483, 712
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 84, 668, 784
Cac8I GCNNGC 2 cut(s) 129, 161
CaiI CAGNNNCTG 1 cut(s) 795
Cfr13I GGNCC 2 cut(s) 44, 171
CviAII CATG 4 cut(s) 48, 245, 605, 766
DdeI CTNAG 4 cut(s) 123, 164, 182, 270
DpnI GATC 3 cut(s) 240, 366, 402
DpnII GATC 3 cut(s) 238, 364, 400
EaeI YGGCCR 2 cut(s) 97, 481
Eam1104I CTCTTC 4 cut(s) 54, 191, 216, 649
EarI CTCTTC 4 cut(s) 54, 191, 216, 649
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 44, 171
Eco57I CTGAAG 2 cut(s) 78, 772
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 51, 248, 608, 769
FaiI YATR 8 cut(s) 49, 219, 246, 578, 606, 767, 817, 819
FaqI GGGAC 2 cut(s) 57, 104
FatI CATG 4 cut(s) 47, 244, 604, 765
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 106, 459, 793
FokI GGATG 3 cut(s) 71, 655, 791
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 3 cut(s) 106, 459, 793
GluI GCNGC 3 cut(s) 106, 459, 793
GsaI CCCAGC 1 cut(s) 799
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 4 cut(s) 99, 187, 483, 712
Hin1II CATG 4 cut(s) 51, 248, 608, 769
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 515, 570, 806
HphI GGTGA 2 cut(s) 364, 545
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 183, 214
Hpy188III TCNNGA 4 cut(s) 337, 559, 680, 803
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 34, 639
HpyCH4III ACNGT 2 cut(s) 15, 719
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 4 cut(s) 131, 159, 458, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 4 cut(s) 123, 164, 182, 270
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 4 cut(s) 51, 248, 608, 769
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 3 cut(s) 238, 364, 400
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 3 cut(s) 92, 470, 804
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 20
MalI GATC 3 cut(s) 240, 366, 402
MboI GATC 3 cut(s) 238, 364, 400
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 2 cut(s) 603, 628
MlsI TGGCCA 2 cut(s) 99, 483
MluCI AATT 5 cut(s) 175, 384, 539, 594, 661
MluNI TGGCCA 2 cut(s) 99, 483
Mox20I TGGCCA 2 cut(s) 99, 483
MscI TGGCCA 2 cut(s) 99, 483
MseI TTAA 2 cut(s) 78, 140
Msp20I TGGCCA 2 cut(s) 99, 483
MspA1I CMGCKG 2 cut(s) 56, 795
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 105
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 817
NdeII GATC 3 cut(s) 238, 364, 400
NlaIII CATG 4 cut(s) 51, 248, 608, 769
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 20
PfeI GAWTC 3 cut(s) 515, 570, 806
PkrI GCNGC 3 cut(s) 107, 460, 794
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 795
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 44, 171
PstNI CAGNNNCTG 1 cut(s) 795
PvuII CAGCTG 2 cut(s) 56, 795
SaqAI TTAA 2 cut(s) 78, 140
SatI GCNGC 3 cut(s) 106, 459, 793
Sau3AI GATC 3 cut(s) 238, 364, 400
Sau96I GGNCC 2 cut(s) 44, 171
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 603, 628
SinI GGWCC 2 cut(s) 44, 171
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
Sse9I AATT 5 cut(s) 175, 384, 539, 594, 661
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 15, 719
TaiI ACGT 1 cut(s) 528
TasI AATT 5 cut(s) 175, 384, 539, 594, 661
TfiI GAWTC 3 cut(s) 515, 570, 806
Tru1I TTAA 2 cut(s) 78, 140
Tru9I TTAA 2 cut(s) 78, 140
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 3 cut(s) 105, 458, 792
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 8 cut(s) 73, 233, 234, 552, 597, 624, 636, 654
VpaK11BI GGWCC 2 cut(s) 44, 171
XapI RAATTY 1 cut(s) 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.