Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

26191087 .. 26192912

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAGATGACGAAGAATTTCAGAAAAAGAAGCTTTCCGGCGGAGGATAACGACCAAGATTGTGATAAAACCAGTGCCCAAGAAGATGAAGAAGAAAAAGAAAGGAGATTGGCGCTGGAGGAGGTGAAATTCCTTCAGAAGCAGAGGGAGAGGAAGTCTGGGATCCCCGCCTTAATTAATAATAACGCCGCCGTGCAGACTCTTCCCGGTTCCACTAATAACAACAATAGTAACAGCAATAATAATGCTAGCTTTAATAAGAACAAGAACAAAAGAGGTAGTGACGACACTCATTCTCCGAGTAATAACAACAACGGTGAAGGCGGAGGCGATGGCGACAAGGACGATCTGGTTCTCCAAGATACTTTTGCTCAGGAAACTGCCGTCATGGCTGAAGATCCCAATATGTTAAAATATGTTGAACACGAACTAGCAAAGAAGAGGGGCAAAAAAATTGATACTTCAGATCAAGTTGAAAATGATTTAAAGCGTGCTGAAGATGAGTTGTACAAAATACCTGACCATCTTAAAGTGAAAAGGCGGAACTCAGAAGAAAGCTCCACTCAATGGACTACTGGGATTGCCGAGGTTCAGCTTCCCATTGAATATAAGCTGAGAAATATTGAGGAAACTGAGGCTGCCAAGAAGTTTTTGCAGGAGAAGCGGCTCATTGGGCGGACAAAATCAGAAGTTAGCATCCCTTCAAGTTACAGTGCTGACTATTTCCAGCGTGGCAGGGATTATGCTGAAAAACTTAGACGAGAACATCCTGAACTCTACAAAGACAGAAGTTCACAGGATGATGGTGGTGTTTCCAGACAAAATGATACTGGCACAGAAGCAGCAGGGCAGAGGCAAGCTGCAACAGATCAGTTCATGCTCGAGCGCTTCCGCAAACGAGAGCGTCACCGCGTCATGAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

309

Amino Acids

35.45

Weight (kDa)

7.0

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	122 - 218	4.7e-27	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccII	CGCG	1 cut(s)	912
AciI	CCGC	9 cut(s)	41, 168, 189, 324, 541, 664, 676, 892, 910
AclWI	GGATC	3 cut(s)	157, 170, 392
AcsI	RAATTY	2 cut(s)	16, 128
AcuI	CTGAAG	4 cut(s)	119, 414, 447, 516
AfaI	GTAC	1 cut(s)	509
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	1 cut(s)	567
AgsI	TTSAA	4 cut(s)	422, 476, 605, 705
AluBI	AGCT	6 cut(s)	33, 252, 558, 595, 613, 860
AluI	AGCT	6 cut(s)	33, 252, 558, 595, 613, 860
AlwI	GGATC	3 cut(s)	157, 170, 392
Ama87I	CYCGRG	1 cut(s)	881
Aor51HI	AGCGCT	1 cut(s)	887
ApeKI	GCWGC	3 cut(s)	638, 842, 860
ApoI	RAATTY	2 cut(s)	16, 128
AseI	ATTAAT	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	115, 888
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	136, 329, 899
AsuNHI	GCTAGC	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	881
BaeGI	GKGCMC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	625, 847, 854
BccI	CCATC	3 cut(s)	326, 531, 797
BceAI	ACGGC	2 cut(s)	176, 368
BcnI	CCSGG	1 cut(s)	207
BfaI	CTAG	2 cut(s)	249, 431
BfoI	RGCGCY	2 cut(s)	116, 889
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
BlsI	GCNGC	5 cut(s)	190, 640, 666, 844, 862
Bme1390I	CCNGG	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	881
BmiI	GGNNCC	2 cut(s)	164, 211
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	1 cut(s)	705
BmtI	GCTAGC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	585
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 280, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	3 cut(s)	72, 580, 835
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	3 cut(s)	696, 766, 805
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMII	CTCAG	4 cut(s)	386, 561, 605, 624
BseNI	ACTGG	3 cut(s)	72, 580, 835
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	625, 847, 854
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	912
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	2 cut(s)	38, 207
BslI	CCNNNNNNNGG	1 cut(s)	567
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	162, 346, 397, 466, 868
BspACI	CCGC	9 cut(s)	41, 168, 189, 324, 541, 664, 676, 892, 910
BspCNI	CTCAG	4 cut(s)	385, 560, 606, 625
BspFNI	CGCG	1 cut(s)	912
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	2 cut(s)	164, 211
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	157, 170, 392
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	3 cut(s)	72, 580, 835
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	162, 346, 397, 466, 868
Bst4CI	ACNGT	2 cut(s)	317, 713
Bst6I	CTCTTC	2 cut(s)	207, 434
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	250, 492, 858
BstDEI	CTNAG	5 cut(s)	372, 547, 614, 633, 755
BstF5I	GGATG	3 cut(s)	696, 766, 805
BstFNI	CGCG	1 cut(s)	912
BstH2I	RGCGCY	2 cut(s)	116, 889
BstHHI	GCGC	2 cut(s)	115, 888
BstKTI	GATC	5 cut(s)	165, 349, 400, 469, 871
BstMBI	GATC	5 cut(s)	162, 346, 397, 466, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	912
BstV1I	GCAGC	3 cut(s)	625, 847, 854
BstX2I	RGATCY	2 cut(s)	162, 397
BstYI	RGATCY	2 cut(s)	162, 397
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	696, 766, 805
BtsIMutI	CAGTG	2 cut(s)	79, 718
Cac8I	GCNNGC	3 cut(s)	250, 492, 858
CciI	TCATGA	1 cut(s)	915
CfoI	GCGC	2 cut(s)	115, 888
CseI	GACGC	2 cut(s)	893, 901
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	3 cut(s)	388, 877, 916
CviJI	RGCY	9 cut(s)	33, 252, 392, 558, 595, 613, 638, 667, 860
CviKI_1	RGCY	9 cut(s)	33, 252, 392, 558, 595, 613, 638, 667, 860
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	5 cut(s)	372, 547, 614, 633, 755
DpnI	GATC	5 cut(s)	164, 348, 399, 468, 870
DpnII	GATC	5 cut(s)	162, 346, 397, 466, 868
DraI	TTTAAA	1 cut(s)	486
Eam1104I	CTCTTC	2 cut(s)	207, 434
EarI	CTCTTC	2 cut(s)	207, 434
EciI	GGCGGA	4 cut(s)	56, 339, 556, 691
Eco47III	AGCGCT	1 cut(s)	887
Eco57I	CTGAAG	4 cut(s)	119, 414, 447, 516
Eco88I	CYCGRG	1 cut(s)	881
FaeI	CATG	3 cut(s)	391, 880, 919
FaiI	YATR	7 cut(s)	389, 407, 417, 609, 744, 878, 917
FatI	CATG	3 cut(s)	387, 876, 915
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
FokI	GGATG	3 cut(s)	683, 753, 812
Fsp4HI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
FspBI	CTAG	2 cut(s)	249, 431
GlaI	GCGC	2 cut(s)	114, 887
GluI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	2 cut(s)	116, 889
HapII	CCGG	2 cut(s)	38, 207
HgaI	GACGC	2 cut(s)	893, 901
HhaI	GCGC	2 cut(s)	115, 888
Hin1II	CATG	3 cut(s)	391, 880, 919
Hin6I	GCGC	2 cut(s)	113, 886
HinP1I	GCGC	2 cut(s)	113, 886
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	38, 207
HphI	GGTGA	3 cut(s)	136, 329, 899
Hpy166II	GTNNAC	1 cut(s)	794
Hpy188I	TCNGA	6 cut(s)	23, 138, 300, 466, 550, 688
Hpy188III	TCNNGA	4 cut(s)	374, 770, 816, 916
Hpy8I	GTNNAC	1 cut(s)	794
HpyAV	CCTTC	3 cut(s)	143, 314, 711
HpyCH4III	ACNGT	2 cut(s)	317, 713
HpyCH4V	TGCA	3 cut(s)	196, 655, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
HpyF3I	CTNAG	5 cut(s)	372, 547, 614, 633, 755
Hsp92II	CATG	3 cut(s)	391, 880, 919
HspAI	GCGC	2 cut(s)	113, 886
Kzo9I	GATC	5 cut(s)	162, 346, 397, 466, 868
LmnI	GCTCC	1 cut(s)	563
Lsp1109I	GCAGC	3 cut(s)	625, 847, 854
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	2 cut(s)	249, 431
MaeIII	GTNAC	4 cut(s)	230, 281, 707, 905
MalI	GATC	5 cut(s)	164, 348, 399, 468, 870
MboI	GATC	5 cut(s)	162, 346, 397, 466, 868
MflI	RGATCY	2 cut(s)	162, 397
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	4 cut(s)	16, 128, 174, 453
MlyI	GAGTC	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	6 cut(s)	173, 177, 255, 410, 485, 528
MspI	CCGG	2 cut(s)	38, 207
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	912
MwoI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	5 cut(s)	162, 346, 397, 466, 868
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	3 cut(s)	391, 880, 919
NlaIV	GGNNCC	2 cut(s)	164, 211
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	2 cut(s)	281, 905
PacI	TTAATTAA	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	881
PagI	TCATGA	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	190, 640, 666, 844, 862
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	164, 211
PspXI	VCTCGAGB	1 cut(s)	881
PsuI	RGATCY	2 cut(s)	162, 397
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SaqAI	TTAA	6 cut(s)	173, 177, 255, 410, 485, 528
SatI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
Sau3AI	GATC	5 cut(s)	162, 346, 397, 466, 868
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	881
SlaI	CTCGAG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	4 cut(s)	16, 128, 174, 453
SsiI	CCGC	9 cut(s)	41, 168, 189, 324, 541, 664, 676, 892, 910
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	249, 431
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	317, 713
TaqI	TCGA	1 cut(s)	882
TasI	AATT	4 cut(s)	16, 128, 174, 453
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	2 cut(s)	191, 667
Tru1I	TTAA	6 cut(s)	173, 177, 255, 410, 485, 528
Tru9I	TTAA	6 cut(s)	173, 177, 255, 410, 485, 528
TscAI	CASTG	2 cut(s)	79, 718
TseFI	GTSAC	2 cut(s)	281, 905
TseI	GCWGC	3 cut(s)	638, 842, 860
Tsp45I	GTSAC	2 cut(s)	281, 905
TspDTI	ATGAA	3 cut(s)	17, 102, 865
TspRI	CASTG	2 cut(s)	79, 718
Van91I	CCANNNNNTGG	1 cut(s)	567
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	2 cut(s)	16, 128
XhoI	CTCGAG	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	249, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.