Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010308

Physical Location & Seq

Genomic Coordinates Reverse (-)

26282693 .. 26284040

Gene Structure 1348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTCCCATTTGGCCCAATGTGCTGCTGCTGTCAAGAGAAGGAAAGAACTTCCCTTTGACAACGTCATTCAAAAGGATAAGAAGCTGAAGCTGGTTCTCAAGATACGCAAGATTTTACTCAGCCAACCTGATAGAGTTATGTCGCTTAGAGAGTTAGGTAGGTACAGAAGAGAATTGGTTCTGCAGAAAAAACGCCGTTTCATTGCTCTTCTGAAGAAATTCCCAGCCATGTTTGAGATTGTTGAAGAAGGGGTTTACTCCTTGCAATTTAAACTGACTCCCGAAGCTGAAAGGCTATATTTTGAGGAGTTGAAGGTTAGGAATGAGATGGAAGACCTGTTGGTGGTCAAGTTGAGGAAATTGTTGATGATGTCCTTGGATAAGCGGATTCTATTGGAGAAGATTGCCCATTTGAGGAATGACTTAGGGCTTCCCCTAGAGTTTCGTGACACTATTTGTCACCGGTACCTACAGTTCTTTAAAATAGTTGCAACTGCGCGAGGTCCCGCATTAGAATTAACTCATTGGGACCCCGAACTTGCAGTCTCAGCAGCTGAGTTGTCTGAAGAGGAAAACCGAGTTAGAGAGATTGAAGAGAAGGATTTGATTATAGATAGACCTATCAAGTTCAAAAGATTAAAGCTGCCAAAGGGCCTTAATCTTTCAAAGGATCAGGTACTGTTTGAGAAAGAGAAACATGCTTGTGCGGTTGTCCATGAGATTTTGAGTCTTACTGTGGAGAAGAGAACCCTTGTGGATCACCTTACTCATTTTCGAGAAGAGTTCAAGTTCTCTCAACAGGTGAGGGGTATGCTGATAAGGCACCCCGATATGTTTTATGTGTCCTTGAAAGGAGATAGAGATTCAGTTTTCCTTAGGGAAGCATATCGTGATTCTCAATTGATAGACAAGGATCGTTTGTTGATCATAAAGGAGAAGCTTCGATCTATTATTTCTGTTCCTCAGTTTCCTAGACGGGGTGCTCCCAGGACTGAGGCAGATGGTGCAAAAGGAAGTGATGAGGCAGCAGATGGAACTCTTGAGGAAGGAGAGGAATGGTCTGGGGATGATGATGAGTTCGACGATGACGAAGATGATGATGAAGATGATTGGAGTGATGAAGATGATGATGCACCTCCAAATTTTGACGAAGATAGGAAGACATCGAATATTGGAGTGAGCAAACCAGTCAAACAGGAGGGCAGTTCGAGAGAGAATGATGGAAAGGTGCTTGTTTCAGTGTTGCCAGATGGTTGGCCAAGGGAGCGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

425

Amino Acids

49.52

Weight (kDa)

5.71

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	15 - 224	9e-53	Plant organelle RNA recognition domain
PORR	PF11955	229 - 318	4.2e-36	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01037
fragaria_vesca	FvH4_3g25450
malus_domestica	MD00G1016400.v1.1 MD09G1291100.v1.1
prunus_persica	Prupe.3G002000_v2.0.a1
pyrus_communis	pycom09g19880 pycom17g28260
rosa_chinensis	RchiOBHm_Chr5g0046651
rosa_laevigata	RLG00000034426
rosa_multiflora	Rmu_co8035118.1_g000001 Rmu_sc0003878.1_g000004 Rmu_sc0003878.1_g000005
rosa_roxburghii	Rroxscaffold_1G00034710
rosa_rugosa	Rorug05G0230100 Rorug05G0230600 Rorug05G0230700
rosa_samantha	Rh5AG310500 Rh5BG319000 Rh5CG344600 Rh5DG329700
rosa_wichuraiana	Rw5G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	2 cut(s)	465, 822
AccII	CGCG	1 cut(s)	499
AciI	CCGC	3 cut(s)	385, 507, 707
AclWI	GGATC	3 cut(s)	678, 765, 921
AcoI	YGGCCR	1 cut(s)	1256
AcsI	RAATTY	2 cut(s)	218, 1141
AcuI	CTGAAG	3 cut(s)	107, 233, 585
AfaI	GTAC	3 cut(s)	164, 467, 678
AfeI	AGCGCT	1 cut(s)	1268
AfiI	CCNNNNNNNGG	3 cut(s)	343, 414, 977
AgeI	ACCGGT	1 cut(s)	462
AgsI	TTSAA	8 cut(s)	71, 245, 313, 593, 631, 666, 787, 850
AjnI	CCWGG	1 cut(s)	986
AluBI	AGCT	6 cut(s)	85, 91, 287, 554, 643, 940
AluI	AGCT	6 cut(s)	85, 91, 287, 554, 643, 940
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	3 cut(s)	678, 765, 921
AlwNI	CAGNNNCTG	2 cut(s)	554, 679
Aor51HI	AGCGCT	1 cut(s)	1268
AoxI	GGCC	3 cut(s)	12, 652, 1256
ApeKI	GCWGC	5 cut(s)	23, 26, 551, 643, 1025
ApoI	RAATTY	2 cut(s)	218, 1141
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
AsiGI	ACCGGT	1 cut(s)	462
Asp700I	GAANNNNTTC	2 cut(s)	177, 218
Asp718I	GGTACC	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	499, 1269
AspS9I	GGNCC	4 cut(s)	13, 503, 529, 652
AsuHPI	GGTGA	3 cut(s)	452, 752, 814
AvaII	GGWCC	2 cut(s)	503, 529
AxyI	CCTNAGG	1 cut(s)	875
BalI	TGGCCA	1 cut(s)	1258
BanI	GGYRCC	2 cut(s)	465, 822
BbsI	GAAGAC	2 cut(s)	339, 1166
Bbv12I	GWGCWC	1 cut(s)	985
BbvI	GCAGC	5 cut(s)	10, 13, 563, 630, 1037
BccI	CCATC	5 cut(s)	322, 995, 1025, 1214, 1244
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	988
BclI	TGATCA	1 cut(s)	924
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	2 cut(s)	437, 972
BfmI	CTRYAG	2 cut(s)	182, 470
BfoI	RGCGCY	1 cut(s)	1270
BisI	GCNGC	5 cut(s)	24, 27, 552, 644, 1026
BlsI	GCNGC	5 cut(s)	25, 28, 553, 645, 1027
Bme1390I	CCNGG	1 cut(s)	988
Bme18I	GGWCC	2 cut(s)	503, 529
BmgT120I	GGNCC	4 cut(s)	13, 503, 529, 652
BmiI	GGNNCC	5 cut(s)	467, 505, 530, 531, 824
BmrFI	CCNGG	1 cut(s)	988
BmsI	GCATC	1 cut(s)	1120
BpiI	GAAGAC	2 cut(s)	339, 1166
BpuEI	CTTGAG	2 cut(s)	83, 1061
BsaJI	CCNNGG	3 cut(s)	375, 986, 1259
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	1 cut(s)	1256
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 414, 977
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	1187
Bse21I	CCTNAGG	1 cut(s)	875
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	988
BseDI	CCNNGG	3 cut(s)	375, 986, 1259
BseGI	GGATG	1 cut(s)	1072
BseLI	CCNNNNNNNGG	3 cut(s)	343, 414, 977
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	5 cut(s)	133, 546, 561, 977, 984
BseNI	ACTGG	1 cut(s)	1187
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	5 cut(s)	10, 13, 563, 630, 1037
BseYI	CCCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	499
BshFI	GGCC	3 cut(s)	14, 654, 1258
BshNI	GGYRCC	2 cut(s)	465, 822
BshTI	ACCGGT	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	985
BsiSI	CCGG	1 cut(s)	463
BslFI	GGGAC	2 cut(s)	489, 542
BslI	CCNNNNNNNGG	3 cut(s)	343, 414, 977
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	2 cut(s)	489, 542
BsnI	GGCC	3 cut(s)	14, 654, 1258
Bsp1286I	GDGCHC	1 cut(s)	985
Bsp143I	GATC	5 cut(s)	670, 757, 913, 924, 944
BspACI	CCGC	3 cut(s)	385, 507, 707
BspANI	GGCC	3 cut(s)	14, 654, 1258
BspCNI	CTCAG	5 cut(s)	132, 547, 560, 976, 985
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	5 cut(s)	467, 505, 530, 531, 824
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	3 cut(s)	678, 765, 921
BspQI	GCTCTTC	1 cut(s)	213
BspT107I	GGYRCC	2 cut(s)	465, 822
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	1187
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	3 cut(s)	375, 986, 1259
BssMI	GATC	5 cut(s)	670, 757, 913, 924, 944
BssT1I	CCWWGG	2 cut(s)	375, 1259
Bst2UI	CCWGG	1 cut(s)	988
Bst4CI	ACNGT	3 cut(s)	474, 681, 736
Bst6I	CTCTTC	6 cut(s)	163, 213, 561, 588, 737, 774
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstDEI	CTNAG	8 cut(s)	119, 146, 424, 547, 555, 875, 963, 993
BstF5I	GGATG	1 cut(s)	1072
BstFNI	CGCG	1 cut(s)	499
BstH2I	RGCGCY	1 cut(s)	1270
BstHHI	GCGC	2 cut(s)	499, 1269
BstKTI	GATC	5 cut(s)	673, 760, 916, 927, 947
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	5 cut(s)	670, 757, 913, 924, 944
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 548, 820, 1004, 1264
BstNI	CCWGG	1 cut(s)	988
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	986
BstSFI	CTRYAG	2 cut(s)	182, 470
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	5 cut(s)	10, 13, 563, 630, 1037
BstV2I	GAAGAC	2 cut(s)	339, 1166
BstXI	CCANNNNNNTGG	1 cut(s)	1254
Bsu36I	CCTNAGG	1 cut(s)	875
BsuRI	GGCC	3 cut(s)	14, 654, 1258
BtsCI	GGATG	1 cut(s)	1072
BtsIMutI	CAGTG	1 cut(s)	1245
CaiI	CAGNNNCTG	2 cut(s)	554, 679
CfoI	GCGC	2 cut(s)	499, 1269
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	4 cut(s)	13, 503, 529, 652
Csp6I	GTAC	3 cut(s)	163, 466, 677
CspAI	ACCGGT	1 cut(s)	462
CviAII	CATG	3 cut(s)	229, 698, 716
CviQI	GTAC	3 cut(s)	163, 466, 677
DdeI	CTNAG	8 cut(s)	119, 146, 424, 547, 555, 875, 963, 993
DpnI	GATC	5 cut(s)	672, 759, 915, 926, 946
DpnII	GATC	5 cut(s)	670, 757, 913, 924, 944
DraI	TTTAAA	2 cut(s)	271, 481
EaeI	YGGCCR	1 cut(s)	1256
Eam1104I	CTCTTC	6 cut(s)	163, 213, 561, 588, 737, 774
EarI	CTCTTC	6 cut(s)	163, 213, 561, 588, 737, 774
Eco130I	CCWWGG	2 cut(s)	375, 1259
Eco47I	GGWCC	2 cut(s)	503, 529
Eco47III	AGCGCT	1 cut(s)	1268
Eco57I	CTGAAG	3 cut(s)	107, 233, 585
Eco81I	CCTNAGG	1 cut(s)	875
EcoO109I	RGGNCCY	3 cut(s)	503, 529, 652
EcoRII	CCWGG	1 cut(s)	986
EcoT14I	CCWWGG	2 cut(s)	375, 1259
ErhI	CCWWGG	2 cut(s)	375, 1259
FaeI	CATG	3 cut(s)	232, 701, 719
FaqI	GGGAC	2 cut(s)	489, 542
FatI	CATG	3 cut(s)	228, 697, 715
FauI	CCCGC	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	924
Fnu4HI	GCNGC	5 cut(s)	24, 27, 552, 644, 1026
FokI	GGATG	1 cut(s)	1079
Fsp4HI	GCNGC	5 cut(s)	24, 27, 552, 644, 1026
FspBI	CTAG	2 cut(s)	437, 972
GlaI	GCGC	2 cut(s)	498, 1268
GluI	GCNGC	5 cut(s)	24, 27, 552, 644, 1026
GsaI	CCCAGC	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	1270
HaeIII	GGCC	3 cut(s)	14, 654, 1258
HapII	CCGG	1 cut(s)	463
HhaI	GCGC	2 cut(s)	499, 1269
Hin1II	CATG	3 cut(s)	232, 701, 719
Hin6I	GCGC	2 cut(s)	497, 1267
HinP1I	GCGC	2 cut(s)	497, 1267
HindIII	AAGCTT	1 cut(s)	938
HinfI	GANTC	5 cut(s)	277, 388, 727, 863, 893
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	3 cut(s)	452, 752, 814
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	213, 565
Hpy188III	TCNNGA	8 cut(s)	34, 100, 281, 446, 776, 890, 1040, 1209
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	1085
HpyAV	CCTTC	5 cut(s)	33, 242, 307, 592, 1040
HpyCH4III	ACNGT	3 cut(s)	474, 681, 736
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	6 cut(s)	184, 265, 491, 542, 1007, 1133
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 548, 820, 1004, 1264
HpyF3I	CTNAG	8 cut(s)	119, 146, 424, 547, 555, 875, 963, 993
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	232, 701, 719
HspAI	GCGC	2 cut(s)	497, 1267
KflI	GGGWCCC	1 cut(s)	529
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	924
Kzo9I	GATC	5 cut(s)	670, 757, 913, 924, 944
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	2 cut(s)	988, 1264
Lsp1109I	GCAGC	5 cut(s)	10, 13, 563, 630, 1037
LweI	GCATC	1 cut(s)	1120
MaeI	CTAG	2 cut(s)	437, 972
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	446, 458
MalI	GATC	5 cut(s)	672, 759, 915, 926, 946
MboI	GATC	5 cut(s)	670, 757, 913, 924, 944
MfeI	CAATTG	1 cut(s)	899
MhlI	GDGCHC	1 cut(s)	985
MlsI	TGGCCA	1 cut(s)	1258
MluCI	AATT	7 cut(s)	173, 218, 266, 359, 515, 899, 1141
MluNI	TGGCCA	1 cut(s)	1258
MlyI	GAGTC	2 cut(s)	271, 736
Mox20I	TGGCCA	1 cut(s)	1258
MroXI	GAANNNNTTC	2 cut(s)	177, 218
MscI	TGGCCA	1 cut(s)	1258
MseI	TTAA	5 cut(s)	270, 480, 518, 638, 657
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	1258
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	463
MspR9I	CCNGG	1 cut(s)	988
MunI	CAATTG	1 cut(s)	899
MvaI	CCWGG	1 cut(s)	988
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	5 cut(s)	20, 548, 820, 1004, 1264
NdeII	GATC	5 cut(s)	670, 757, 913, 924, 944
NlaIII	CATG	3 cut(s)	232, 701, 719
NlaIV	GGNNCC	5 cut(s)	467, 505, 530, 531, 824
NmuCI	GTSAC	2 cut(s)	446, 458
NspI	RCATGY	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	1086
PdmI	GAANNNNTTC	2 cut(s)	177, 218
PfeI	GAWTC	3 cut(s)	388, 863, 893
PflFI	GACNNNGTC	1 cut(s)	62
PinAI	ACCGGT	1 cut(s)	462
PkrI	GCNGC	5 cut(s)	25, 28, 553, 645, 1027
PleI	GAGTC	2 cut(s)	271, 735
PpsI	GAGTC	2 cut(s)	271, 735
PpuMI	RGGWCCY	2 cut(s)	503, 529
Psp5II	RGGWCCY	2 cut(s)	503, 529
Psp6I	CCWGG	1 cut(s)	986
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	986
PspN4I	GGNNCC	5 cut(s)	467, 505, 530, 531, 824
PspPI	GGNCC	4 cut(s)	13, 503, 529, 652
PspPPI	RGGWCCY	2 cut(s)	503, 529
PsrI	GAACNNNNNNTAC	2 cut(s)	458, 490
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	2 cut(s)	554, 679
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	164, 467, 678
RsaNI	GTAC	3 cut(s)	163, 466, 677
RseI	CAYNNNNRTG	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	5 cut(s)	270, 480, 518, 638, 657
SatI	GCNGC	5 cut(s)	24, 27, 552, 644, 1026
Sau3AI	GATC	5 cut(s)	670, 757, 913, 924, 944
Sau96I	GGNCC	4 cut(s)	13, 503, 529, 652
SchI	GAGTC	2 cut(s)	271, 736
ScrFI	CCNGG	1 cut(s)	988
SduI	GDGCHC	1 cut(s)	985
SfaNI	GCATC	1 cut(s)	1120
SfcI	CTRYAG	2 cut(s)	182, 470
SinI	GGWCC	2 cut(s)	503, 529
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	98, 1040
SmoI	CTYRAG	2 cut(s)	98, 1040
Sse9I	AATT	7 cut(s)	173, 218, 266, 359, 515, 899, 1141
SsiI	CCGC	3 cut(s)	385, 507, 707
SspI	AATATT	1 cut(s)	1171
SspMI	CTAG	2 cut(s)	437, 972
StyD4I	CCNGG	1 cut(s)	986
StyI	CCWWGG	2 cut(s)	375, 1259
TaaI	ACNGT	3 cut(s)	474, 681, 736
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	5 cut(s)	775, 943, 1080, 1166, 1208
TasI	AATT	7 cut(s)	173, 218, 266, 359, 515, 899, 1141
TfiI	GAWTC	3 cut(s)	388, 863, 893
Tru1I	TTAA	5 cut(s)	270, 480, 518, 638, 657
Tru9I	TTAA	5 cut(s)	270, 480, 518, 638, 657
TscAI	CASTG	1 cut(s)	1245
TseFI	GTSAC	2 cut(s)	446, 458
TseI	GCWGC	5 cut(s)	23, 26, 551, 643, 1025
Tsp45I	GTSAC	2 cut(s)	446, 458
TspDTI	ATGAA	3 cut(s)	190, 1116, 1134
TspRI	CASTG	1 cut(s)	1245
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	503, 529
XapI	RAATTY	2 cut(s)	218, 1141
XceI	RCATGY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1266
XmnI	GAANNNNTTC	2 cut(s)	177, 218
XspI	CTAG	2 cut(s)	437, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.