Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000215

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Forward (+)

183755 .. 184795

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGTAATAGTAGTTTGTGGGCAACTGCAAACACAAACCCGGCGGCGGCGGTGAGAGTGAAGCGATTGAATTTGAACCAGAAGTACTACTACAGCAGCAGCATTTCGTATTCCTCCTCCTCATCCTCCTCCTCCTTCACGGGGTGCCCCCTGCGAATGAGAATGGGAAAGAGGGCGCATATGGCTACGGCTTCTAATTGCCTTCATCACGAGCAGGAGGACCATCTCCTCTCCTTGTTGCAGATTCTTCCGCGTGATTTGCATGACAATTTGCTCAATCAACCCCAACCCAAACGAGCTCAACTCTTAGAGGTTATAATGGATTTGGGTCGACTGCCCGAAGCACGCTACCTTGATGATCTTGGCGCCCAATATTTGAGGACAACTGCGGTTTCATTGAAAGAGTTGGAGGATGCTCAAAATGCTGTTGGAGATTTTGGGGGGGACAATAGAGCTGGCATTGCGGGTACCTTGCACAGAATATCAGCAATCAGGAGTAGGAAAGGGATGATTGTTGGATTAACTTGCCGAGTTGGCAGGGCTGTATCTGGTCATATTGACATGGTTTACGATCTGCTTCAATACAGCAAGAGCATCTTGTTTATCGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

205

Amino Acids

22.58

Weight (kDa)

9.51

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	3 cut(s)	144, 365, 467
AccI	GTMKAC	1 cut(s)	331
AccII	CGCG	1 cut(s)	253
AciI	CCGC	6 cut(s)	44, 47, 50, 251, 389, 464
AcsI	RAATTY	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	366
AdeI	CACNNNGTG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	86, 469
AfiI	CCNNNNNNNGG	2 cut(s)	46, 141
AgsI	TTSAA	4 cut(s)	70, 76, 400, 581
AluBI	AGCT	2 cut(s)	299, 455
AluI	AGCT	2 cut(s)	299, 455
Alw21I	GWGCWC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	96, 99
ApoI	RAATTY	1 cut(s)	70
Asp718I	GGTACC	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	178, 368
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	3 cut(s)	144, 365, 467
BanII	GRGCYC	1 cut(s)	301
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	108, 111
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	91
BfoI	RGCGCY	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	4 cut(s)	45, 48, 97, 100
BlsI	GCNGC	4 cut(s)	46, 49, 98, 101
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	3 cut(s)	146, 367, 469
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	403, 603
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BpuMI	CCSGG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 141
Bse3DI	GCAATG	1 cut(s)	459
BseGI	GGATG	3 cut(s)	122, 418, 513
BseLI	CCNNNNNNNGG	2 cut(s)	46, 141
BseMI	GCAATG	1 cut(s)	459
BseRI	GAGGAG	5 cut(s)	106, 109, 118, 121, 218
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	108, 111
Bsh1236I	CGCG	1 cut(s)	253
BshNI	GGYRCC	3 cut(s)	144, 365, 467
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	46, 141
BsmFI	GGGAC	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	149, 301
Bsp143I	GATC	2 cut(s)	358, 571
BspACI	CCGC	6 cut(s)	44, 47, 50, 251, 389, 464
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	146, 367, 469
BspT107I	GGYRCC	3 cut(s)	144, 365, 467
BsrDI	GCAATG	1 cut(s)	459
BssMI	GATC	2 cut(s)	358, 571
BssNI	GRCGYC	1 cut(s)	366
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	346, 457
BstDEI	CTNAG	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	122, 418, 513
BstFNI	CGCG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	2 cut(s)	178, 368
BstKTI	GATC	2 cut(s)	361, 574
BstMBI	GATC	2 cut(s)	358, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 259, 422, 461, 534
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	108, 111
BtsCI	GGATG	3 cut(s)	122, 418, 513
Cac8I	GCNNGC	2 cut(s)	346, 457
CfoI	GCGC	2 cut(s)	178, 368
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	85, 468
CviAII	CATG	2 cut(s)	263, 562
CviJI	RGCY	5 cut(s)	185, 191, 299, 455, 542
CviKI_1	RGCY	5 cut(s)	185, 191, 299, 455, 542
CviQI	GTAC	2 cut(s)	85, 468
DdeI	CTNAG	1 cut(s)	307
DinI	GGCGCC	1 cut(s)	367
DpnI	GATC	2 cut(s)	360, 573
DpnII	GATC	2 cut(s)	358, 571
DraIII	CACNNNGTG	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	301
EgeI	GGCGCC	1 cut(s)	367
EheI	GGCGCC	1 cut(s)	367
FaeI	CATG	2 cut(s)	266, 565
FaiI	YATR	6 cut(s)	180, 182, 264, 317, 555, 563
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	2 cut(s)	262, 561
FauI	CCCGC	1 cut(s)	457
FauNDI	CATATG	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	45, 48, 97, 100
FokI	GGATG	3 cut(s)	109, 425, 520
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	4 cut(s)	45, 48, 97, 100
GlaI	GCGC	2 cut(s)	177, 367
GluI	GCNGC	4 cut(s)	45, 48, 97, 100
HaeII	RGCGCY	1 cut(s)	369
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	2 cut(s)	178, 368
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	266, 565
Hin6I	GCGC	2 cut(s)	176, 366
HinP1I	GCGC	2 cut(s)	176, 366
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	332, 568
Hpy188I	TCNGA	1 cut(s)	608
Hpy188III	TCNNGA	2 cut(s)	209, 493
Hpy8I	GTNNAC	2 cut(s)	332, 568
HpyAV	CCTTC	3 cut(s)	145, 212, 603
HpyCH4V	TGCA	4 cut(s)	29, 241, 262, 475
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 259, 422, 461, 534
HpyF3I	CTNAG	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	266, 565
HspAI	GCGC	2 cut(s)	176, 366
KasI	GGCGCC	1 cut(s)	365
KpnI	GGTACC	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	358, 571
LpnPI	CCDG	8 cut(s)	54, 92, 164, 200, 441, 478, 523, 534
Lsp1109I	GCAGC	2 cut(s)	108, 111
LweI	GCATC	2 cut(s)	403, 603
MalI	GATC	2 cut(s)	360, 573
MboI	GATC	2 cut(s)	358, 571
MboII	GAAGA	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	149, 301
MluCI	AATT	3 cut(s)	70, 196, 268
Mly113I	GGCGCC	1 cut(s)	366
MmeI	TCCRAC	3 cut(s)	387, 409, 496
MseI	TTAA	1 cut(s)	521
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	5 cut(s)	182, 259, 422, 461, 534
NarI	GGCGCC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	2 cut(s)	358, 571
NlaIII	CATG	2 cut(s)	266, 565
NlaIV	GGNNCC	3 cut(s)	146, 367, 469
NmeAIII	GCCGAG	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	46, 49, 98, 101
PluTI	GGCGCC	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	146, 367, 469
PspPI	GGNCC	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	68, 100
RsaI	GTAC	2 cut(s)	86, 469
RsaNI	GTAC	2 cut(s)	85, 468
SacI	GAGCTC	1 cut(s)	301
SalI	GTCGAC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	4 cut(s)	45, 48, 97, 100
Sau3AI	GATC	2 cut(s)	358, 571
Sau96I	GGNCC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	149, 301
SetI	ASST	6 cut(s)	301, 315, 354, 457, 473, 614
SfaNI	GCATC	2 cut(s)	403, 603
SfcI	CTRYAG	1 cut(s)	91
SfoI	GGCGCC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	220
Sse9I	AATT	3 cut(s)	70, 196, 268
SsiI	CCGC	6 cut(s)	44, 47, 50, 251, 389, 464
SspDI	GGCGCC	1 cut(s)	365
SspI	AATATT	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	331
TasI	AATT	3 cut(s)	70, 196, 268
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	2 cut(s)	47, 50
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TseI	GCWGC	2 cut(s)	96, 99
TspDTI	ATGAA	2 cut(s)	194, 384
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	331
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.