Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0008857

Physical Location & Seq

Genomic Coordinates Forward (+)

1140165 .. 1143706

Gene Structure 3542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAAGACGATAAAACCCTAATCAAACAATACGATATGGAAGACGAGAAAACCCTGATCAAACAACAGCAAGAACAGCAAGAGGAGCTCGAAGACGAGGAATTCCGAAAAGAGTTTGAATGCTGCATTTGCCTGGATCTTCTTTACAAGCCAGTTGTATTAGGTTGTGGCCACATTTCATGCTTCTGGTGTGTCTTTAACACCATGAATGCTTTTCATGAGTCCTATTGTCCCATTTGTCGGGACCCATTCAATCATTTTCCGAGTATCTGTCAGTTGATGCATTTCTTGCTCCAGAAGTTGTATCCTGGAGTGTACGAAAGAAGAGGAAAAGAAGTGGAAGAAGAAGAAAAGGAAGTTGGTTTCTTCTCGCCTCAATTTGATAATTCACTATCCGGGTCACATTGTATTGAGGAGTCAAATATTCTGGGCAATGTTCACTCAAAGAACTCTGAAAGTTGTTCTTCTGAGAATGAAGCTACTGGAAATGCAGCAATCCAAGAAGGCTGTTCACGTGATTACAATCTTGGAAATGGAACTCACCAGAGAGTTTCTGTTTCTGATCTACTGTGTGCTGCATGCAAGAACCTGCTCTTTCAACCTGTTGTTCTCAATTGTGGTCATGTATATTGTGAGTCCTGTATCAACATTCCAGCTGATGGAATTTCTAAGTGTCAGATTTGTCAAAGCATGCATCCGAAGGGATTCCCTAGTGTTTGCAAAATTTTAGAGCACTTCTTGGAGGAGCAATATCCTGAAATTTATTTGCAGCGACAAGTATCATCACTAAAACTGCATGTTCGTCAACGTGCTGACCAGTCATCTTCGACACTTTCTGATGATTACTTATCTTGCTGGGCTGGGCAGAAAGTTCATTACGGAGTTGGTTGTGATTGCTGTGGGGGGTGTGGGGGATATCACCTGTTCGGAGGATATCATGTATTATGGTTCATTTTTGTGAAAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

324

Amino Acids

36.8

Weight (kDa)

5.24

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	38 - 85	2.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4	PF15227	41 - 80	7.4e-06	zinc finger of C3HC4-type, RING
zf-RING_UBOX	PF13445	191 - 221	4.7e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00570 FvH4_4g00570
malus_domestica	MD04G1005700.v1.1
prunus_persica	Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1
pyrus_communis	pycom420g00860
rosa_chinensis	RchiOBHm_Chr4g0386021
rosa_laevigata	RLG00000010180
rosa_multiflora	Rmu_sc0000472.1_g000019
rosa_roxburghii	Rroxscaffold_5G00333780 Rroxscaffold_5G00338450 Rroxscaffold_5G00338750
rosa_rugosa	Rorug03G0306300 Rorug03G0306400 Rorug03G0306400 Rorug03G0306500
rosa_samantha	Rh4AG010100 Rh4BG007100 Rh4CG010800 Rh4DG008200
rosa_wichuraiana	Rw4G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	597
AccB7I	CCANNNNNTGG	1 cut(s)	659
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	4 cut(s)	101, 663, 723, 759
AcvI	CACGTG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	240, 659
AgsI	TTSAA	3 cut(s)	119, 253, 599
AjnI	CCWGG	2 cut(s)	132, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	3 cut(s)	88, 479, 656
AluI	AGCT	3 cut(s)	88, 479, 656
Alw21I	GWGCWC	2 cut(s)	90, 735
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	123, 491, 575, 769
ApoI	RAATTY	4 cut(s)	101, 663, 723, 759
Asp700I	GAANNNNTTC	1 cut(s)	704
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	533, 911
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	90
BbrPI	CACGTG	1 cut(s)	515
BbsI	GAAGAC	3 cut(s)	12, 48, 99
Bbv12I	GWGCWC	2 cut(s)	90, 735
BbvI	GCAGC	4 cut(s)	110, 503, 562, 781
BccI	CCATC	1 cut(s)	653
BciT130I	CCWGG	2 cut(s)	134, 309
BciVI	GTATCC	1 cut(s)	315
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	397
BfaI	CTAG	1 cut(s)	711
BfuAI	ACCTGC	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	315
BisI	GCNGC	4 cut(s)	124, 492, 576, 770
BlsI	GCNGC	4 cut(s)	125, 493, 577, 771
Bme1390I	CCNGG	3 cut(s)	134, 309, 397
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	245, 246
BmrFI	CCNGG	3 cut(s)	134, 309, 397
BmsI	GCATC	2 cut(s)	270, 703
BpiI	GAAGAC	3 cut(s)	12, 48, 99
BpmI	CTGGAG	2 cut(s)	278, 330
BpuMI	CCSGG	1 cut(s)	397
BsaAI	YACGTR	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 659
Bse1I	ACTGG	3 cut(s)	152, 487, 817
Bse3DI	GCAATG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	134, 309
BseGI	GGATG	1 cut(s)	694
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	240, 659
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	3 cut(s)	152, 487, 817
BseRI	GAGGAG	3 cut(s)	98, 428, 758
BseXI	GCAGC	4 cut(s)	110, 503, 562, 781
BseYI	CCCAGC	2 cut(s)	855, 860
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	2 cut(s)	90, 735
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	2 cut(s)	216, 257
BslI	CCNNNNNNNGG	2 cut(s)	240, 659
BsmFI	GGGAC	2 cut(s)	216, 257
BsmI	GAATGC	2 cut(s)	125, 214
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	90, 735
Bsp143I	GATC	3 cut(s)	57, 136, 562
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	245, 246
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	3 cut(s)	152, 487, 817
BssMI	GATC	3 cut(s)	57, 136, 562
Bst2UI	CCWGG	2 cut(s)	134, 309
Bst4CI	ACNGT	1 cut(s)	570
Bst6I	CTCTTC	1 cut(s)	319
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	580, 692
BstDEI	CTNAG	2 cut(s)	468, 669
BstF5I	GGATG	1 cut(s)	694
BstKTI	GATC	3 cut(s)	60, 139, 565
BstMBI	GATC	3 cut(s)	57, 136, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 85, 129, 289
BstNI	CCWGG	2 cut(s)	134, 309
BstNSI	RCATGY	3 cut(s)	582, 694, 800
BstSCI	CCNGG	3 cut(s)	132, 307, 395
BstV1I	GCAGC	4 cut(s)	110, 503, 562, 781
BstV2I	GAAGAC	3 cut(s)	12, 48, 99
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	694
BveI	ACCTGC	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	580, 692
CciI	TCATGA	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	8 cut(s)	180, 205, 218, 579, 623, 691, 797, 938
CviJI	RGCY	7 cut(s)	88, 151, 171, 479, 507, 656, 860
CviKI_1	RGCY	7 cut(s)	88, 151, 171, 479, 507, 656, 860
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	468, 669
DpnI	GATC	3 cut(s)	59, 138, 564
DpnII	GATC	3 cut(s)	57, 136, 562
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco32I	GATATC	2 cut(s)	917, 935
Eco47I	GGWCC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	88
Eco72I	CACGTG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	132, 307
EcoRV	GATATC	2 cut(s)	917, 935
EcoT22I	ATGCAT	2 cut(s)	285, 696
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	8 cut(s)	183, 208, 221, 582, 626, 694, 800, 941
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	2 cut(s)	216, 257
FatI	CATG	8 cut(s)	179, 204, 217, 578, 622, 690, 796, 937
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	124, 492, 576, 770
FokI	GGATG	1 cut(s)	681
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	4 cut(s)	124, 492, 576, 770
FspBI	CTAG	1 cut(s)	711
GluI	GCNGC	4 cut(s)	124, 492, 576, 770
GsaI	CCCAGC	2 cut(s)	859, 864
GsuI	CTGGAG	2 cut(s)	278, 330
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	8 cut(s)	183, 208, 221, 582, 626, 694, 800, 941
HincII	GTYRAC	1 cut(s)	806
HindII	GTYRAC	1 cut(s)	806
HinfI	GANTC	4 cut(s)	221, 416, 635, 705
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	533, 911
Hpy166II	GTNNAC	4 cut(s)	316, 439, 512, 806
Hpy188I	TCNGA	9 cut(s)	107, 264, 454, 469, 562, 678, 699, 838, 929
Hpy188III	TCNNGA	4 cut(s)	218, 242, 295, 755
Hpy8I	GTNNAC	4 cut(s)	316, 439, 512, 806
HpyAV	CCTTC	2 cut(s)	497, 694
HpyCH4III	ACNGT	1 cut(s)	570
HpyCH4IV	ACGT	2 cut(s)	514, 808
HpyCH4V	TGCA	9 cut(s)	126, 283, 491, 578, 582, 694, 720, 769, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 85, 129, 289
HpyF3I	CTNAG	2 cut(s)	468, 669
HpySE526I	ACGT	2 cut(s)	514, 808
Hsp92II	CATG	8 cut(s)	183, 208, 221, 582, 626, 694, 800, 941
KflI	GGGWCCC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	57, 136, 562
LmnI	GCTCC	3 cut(s)	85, 297, 745
Lsp1109I	GCAGC	4 cut(s)	110, 503, 562, 781
LweI	GCATC	2 cut(s)	270, 703
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	2 cut(s)	514, 808
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	3 cut(s)	59, 138, 564
MboI	GATC	3 cut(s)	57, 136, 562
MfeI	CAATTG	1 cut(s)	613
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	90, 735
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	7 cut(s)	101, 377, 385, 613, 663, 723, 759
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	3 cut(s)	230, 425, 644
MnlI	CCTC	7 cut(s)	76, 91, 320, 384, 406, 736, 923
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	2 cut(s)	285, 696
MroXI	GAANNNNTTC	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	956
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	3 cut(s)	134, 309, 397
MunI	CAATTG	1 cut(s)	613
Mva1269I	GAATGC	2 cut(s)	125, 214
MvaI	CCWGG	2 cut(s)	134, 309
MwoI	GCNNNNNNNGC	4 cut(s)	76, 85, 129, 289
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	3 cut(s)	57, 136, 562
NlaIII	CATG	8 cut(s)	183, 208, 221, 582, 626, 694, 800, 941
NlaIV	GGNNCC	2 cut(s)	245, 246
NmuCI	GTSAC	1 cut(s)	399
NsiI	ATGCAT	2 cut(s)	285, 696
NspI	RCATGY	3 cut(s)	582, 694, 800
PaeI	GCATGC	2 cut(s)	582, 694
PagI	TCATGA	1 cut(s)	217
PctI	GAATGC	2 cut(s)	125, 214
PdmI	GAANNNNTTC	1 cut(s)	704
PfeI	GAWTC	1 cut(s)	705
PflMI	CCANNNNNTGG	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	125, 493, 577, 771
PleI	GAGTC	3 cut(s)	229, 424, 643
PmaCI	CACGTG	1 cut(s)	515
PmlI	CACGTG	1 cut(s)	515
PpsI	GAGTC	3 cut(s)	229, 424, 643
Ppu21I	YACGTR	1 cut(s)	515
PpuMI	RGGWCCY	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	132, 307
PspCI	CACGTG	1 cut(s)	515
PspFI	CCCAGC	2 cut(s)	855, 860
PspGI	CCWGG	2 cut(s)	132, 307
PspN4I	GGNNCC	2 cut(s)	245, 246
PspPI	GGNCC	1 cut(s)	244
PspPPI	RGGWCCY	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	956
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	4 cut(s)	124, 492, 576, 770
Sau3AI	GATC	3 cut(s)	57, 136, 562
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	3 cut(s)	230, 425, 644
ScrFI	CCNGG	3 cut(s)	134, 309, 397
SduI	GDGCHC	2 cut(s)	90, 735
SetI	ASST	9 cut(s)	90, 166, 481, 517, 591, 604, 658, 811, 924
SfaNI	GCATC	2 cut(s)	270, 703
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	956
SphI	GCATGC	2 cut(s)	582, 694
Sse9I	AATT	7 cut(s)	101, 377, 385, 613, 663, 723, 759
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	132, 307, 395
TaaI	ACNGT	1 cut(s)	570
TaiI	ACGT	2 cut(s)	517, 811
TaqI	TCGA	2 cut(s)	90, 827
TasI	AATT	7 cut(s)	101, 377, 385, 613, 663, 723, 759
TfiI	GAWTC	1 cut(s)	705
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	4 cut(s)	123, 491, 575, 769
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	6 cut(s)	168, 206, 221, 489, 863, 940
TspGWI	ACGGA	1 cut(s)	894
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	4 cut(s)	101, 663, 723, 759
XceI	RCATGY	3 cut(s)	582, 694, 800
XmnI	GAANNNNTTC	1 cut(s)	704
XspI	CTAG	1 cut(s)	711
Zsp2I	ATGCAT	2 cut(s)	285, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.