Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0008996

Physical Location & Seq

Genomic Coordinates Reverse (-)

1774049 .. 1781034

Gene Structure 6986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGGGCGTATCGCTCAAGTGCGGCGACTGCGGGACTCTGCTGAGGTCGGTTGAGGAAGCCCAAGAGCATGCCGACCTCACCTCCCACTCCAACTTCTCTGAGTCCACCGAAGCTGTTCTCAATCTCGTTTGCTCTTCCTGCGGCAAACCTTGCCGATCCAAAACTGAAAGTGATTTGCACACCAAAAGAACTGGGCATACTGAGTTTGTTGATAAGACTGCGGATGCAGCTAAACCGATAAGTTTGGAGGTTCCAAAGACTACTCCTTCAGGGTCCGAAGAGGCTGTTTGTGCAAGTAGCCATGCGCCAGAAGAAATGGTCGTCCCGGAGGTTGACAAAAAGCTGCTTGAGGAACTTGAAGGAATGGGCTTTTCAACAGCACGGGCAACCCGTGCACTTCACTATTCTGGTAACGCTAGCTTGGAGGCTGCTGTCAATTGGGTGGTTGAACATGAGACTGATCCGGACATTGATGAAATGCCTTCAGTACCAATAAACAGCAAAGTTGAGGCTCCAAAACCTTCTCTCACGCCAGAACAATTGAAAGCCAAGCAACAAGAGCTTAGGGAGAAAGCCCGCAAGAAGAAAGAAGAAGAAGAGAAGAGAATGGAAAGAGAGAGAGAAAAGGAGAGGATTCGCGTGGGCAAGGAACTCCTAGAAGCGAAGAGAATAGAAGAAGACAATGAAAGAAAACGGATTATTGCTTTGCGAAAAGCAGAGAAAGATGAAGAGAAAAGAGCTAGGGAAAAGATTCGTCAAAAGTTGGAGGAAGATAAGGCAGAGAGGAGGAGGAGACTTGGGTTGCCACCAGAAGATCCTTCAACTGTAAAGCCTGCTGCACCTGTTGTGGAGGAGAAAAAGAGCTCATTACCCATAAGGCCTGCCACAAAAGCAGAGCAAATGAGAGAATGTTTGATCGATCTCTCAAGCAGAATCACAAGGAGGACGATGCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

321

Amino Acids

36.06

Weight (kDa)

6.46

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_OTU1_C	PF24560	3 - 35	3.5e-10	Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
UBA_7	PF22562	113 - 160	6.1e-18	UBA-like domain
UBA	PF00627	115 - 148	1.1e-07	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04850 AT1G04850
fragaria_vesca	FvH4_4g13780 FvH4_4g13780 FvH4_4g13780
malus_domestica	MD04G1012000.v1.1 MD13G1284100.v1.1 MD13G1284200.v1.1
prunus_persica	Prupe.1G010500_v2.0.a1 Prupe.1G010500_v2.0.a1
pyrus_communis	pycom04g00960 pycom420g01260
rosa_chinensis	RchiOBHm_Chr4g0414661
rosa_laevigata	RLG00000008127
rosa_multiflora	Rmu_sc0001192.1_g000017 Rmu_sc0006138.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358470
rosa_rugosa	Rorug04G0129300
rosa_samantha	Rh4AG187600 Rh4BG186400 Rh4CG199900
rosa_wichuraiana	Rw4G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	642
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	6 cut(s)	5, 24, 33, 144, 224, 580
AclWI	GGATC	3 cut(s)	153, 458, 812
AcuI	CTGAAG	2 cut(s)	255, 471
AfaI	GTAC	1 cut(s)	492
AgsI	TTSAA	5 cut(s)	362, 378, 452, 547, 825
AluBI	AGCT	7 cut(s)	116, 233, 346, 423, 565, 743, 867
AluI	AGCT	7 cut(s)	116, 233, 346, 423, 565, 743, 867
Alw21I	GWGCWC	2 cut(s)	400, 869
Alw26I	GTCTC	2 cut(s)	452, 790
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	3 cut(s)	153, 458, 812
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	1 cut(s)	881
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	230, 346, 431, 839
Asp700I	GAANNNNTTC	2 cut(s)	117, 753
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	2 cut(s)	400, 869
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	4 cut(s)	242, 333, 418, 826
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	452, 790
BfaI	CTAG	3 cut(s)	420, 659, 744
BisI	GCNGC	6 cut(s)	25, 145, 231, 347, 432, 840
BlsI	GCNGC	6 cut(s)	26, 146, 232, 348, 433, 841
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	3 cut(s)	255, 277, 516
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	2 cut(s)	217, 942
BmtI	GCTAGC	1 cut(s)	423
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	687
Bpu10I	CCTNAGC	2 cut(s)	44, 566
BpuEI	CTTGAG	2 cut(s)	371, 913
BpuMI	CCSGG	1 cut(s)	329
Bsa29I	ATCGAT	1 cut(s)	921
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bse1I	ACTGG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	466
BseCI	ATCGAT	1 cut(s)	921
BseGI	GGATG	1 cut(s)	232
BseMII	CTCAG	3 cut(s)	35, 93, 195
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	4 cut(s)	802, 805, 808, 869
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	4 cut(s)	242, 333, 418, 826
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	883
BshVI	ATCGAT	1 cut(s)	921
BsiHKAI	GWGCWC	2 cut(s)	400, 869
BsiSI	CCGG	2 cut(s)	329, 467
BslFI	GGGAC	2 cut(s)	49, 311
BsmAI	GTCTC	2 cut(s)	452, 790
BsmFI	GGGAC	2 cut(s)	49, 311
BsnI	GGCC	1 cut(s)	883
Bsp1286I	GDGCHC	2 cut(s)	400, 869
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	5 cut(s)	158, 463, 817, 918, 922
BspACI	CCGC	6 cut(s)	5, 24, 33, 144, 224, 580
BspANI	GGCC	1 cut(s)	883
BspCNI	CTCAG	3 cut(s)	36, 94, 196
BspDI	ATCGAT	1 cut(s)	921
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	642
BspLI	GGNNCC	3 cut(s)	255, 277, 516
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	3 cut(s)	153, 458, 812
BspQI	GCTCTTC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	5 cut(s)	158, 463, 817, 918, 922
Bst4CI	ACNGT	1 cut(s)	829
Bst6I	CTCTTC	6 cut(s)	142, 276, 594, 599, 662, 726
BstAPI	GCANNNNNTGC	2 cut(s)	153, 395
BstC8I	GCNNGC	6 cut(s)	7, 72, 421, 580, 837, 885
BstDEI	CTNAG	4 cut(s)	44, 102, 204, 566
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	5 cut(s)	161, 466, 820, 921, 925
BstMAI	GTCTC	2 cut(s)	452, 790
BstMBI	GATC	5 cut(s)	158, 463, 817, 918, 922
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 141, 153, 230, 293, 395, 562, 893
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	4 cut(s)	242, 333, 418, 826
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
Bsu15I	ATCGAT	1 cut(s)	921
BsuRI	GGCC	1 cut(s)	883
BsuTUI	ATCGAT	1 cut(s)	921
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	6 cut(s)	7, 72, 421, 580, 837, 885
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	276
ClaI	ATCGAT	1 cut(s)	921
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	3 cut(s)	71, 305, 455
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	4 cut(s)	44, 102, 204, 566
DpnI	GATC	5 cut(s)	160, 465, 819, 920, 924
DpnII	GATC	5 cut(s)	158, 463, 817, 918, 922
Eam1104I	CTCTTC	6 cut(s)	142, 276, 594, 599, 662, 726
EarI	CTCTTC	6 cut(s)	142, 276, 594, 599, 662, 726
Ecl136II	GAGCTC	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	883
Eco24I	GRGCYC	1 cut(s)	869
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	867
Eco57I	CTGAAG	2 cut(s)	255, 471
EcoICRI	GAGCTC	1 cut(s)	867
EcoT38I	GRGCYC	1 cut(s)	869
FaeI	CATG	3 cut(s)	74, 308, 458
FaiI	YATR	5 cut(s)	72, 201, 306, 456, 878
FaqI	GGGAC	2 cut(s)	49, 311
FatI	CATG	3 cut(s)	70, 304, 454
FauI	CCCGC	2 cut(s)	26, 587
Fnu4HI	GCNGC	6 cut(s)	25, 145, 231, 347, 432, 840
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	869
Fsp4HI	GCNGC	6 cut(s)	25, 145, 231, 347, 432, 840
FspBI	CTAG	3 cut(s)	420, 659, 744
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	6 cut(s)	25, 145, 231, 347, 432, 840
HaeIII	GGCC	1 cut(s)	883
HapII	CCGG	2 cut(s)	329, 467
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	74, 308, 458
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	5 cut(s)	37, 104, 637, 754, 936
HpaII	CCGG	2 cut(s)	329, 467
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	3 cut(s)	108, 337, 398
Hpy188I	TCNGA	2 cut(s)	103, 280
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	3 cut(s)	108, 337, 398
HpyAV	CCTTC	5 cut(s)	279, 356, 495, 534, 831
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4V	TGCA	6 cut(s)	181, 230, 296, 398, 842, 955
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 141, 153, 230, 293, 395, 562, 893
HpyF3I	CTNAG	4 cut(s)	44, 102, 204, 566
Hsp92II	CATG	3 cut(s)	74, 308, 458
HspAI	GCGC	1 cut(s)	308
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	5 cut(s)	158, 463, 817, 918, 922
LguI	GCTCTTC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	4 cut(s)	242, 333, 418, 826
LweI	GCATC	2 cut(s)	217, 942
MaeI	CTAG	3 cut(s)	420, 659, 744
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	5 cut(s)	160, 465, 819, 920, 924
MboI	GATC	5 cut(s)	158, 463, 817, 918, 922
MfeI	CAATTG	2 cut(s)	439, 542
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	2 cut(s)	400, 869
MluCI	AATT	2 cut(s)	439, 542
MlyI	GAGTC	2 cut(s)	31, 113
MmeI	TCCRAC	2 cut(s)	117, 747
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	2 cut(s)	117, 753
MspI	CCGG	2 cut(s)	329, 467
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	2 cut(s)	439, 542
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	8 cut(s)	30, 141, 153, 230, 293, 395, 562, 893
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	5 cut(s)	158, 463, 817, 918, 922
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	3 cut(s)	74, 308, 458
NlaIV	GGNNCC	3 cut(s)	255, 277, 516
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PdmI	GAANNNNTTC	2 cut(s)	117, 753
PfeI	GAWTC	3 cut(s)	637, 754, 936
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	6 cut(s)	26, 146, 232, 348, 433, 841
PleI	GAGTC	2 cut(s)	31, 112
PpsI	GAGTC	2 cut(s)	31, 112
Psp124BI	GAGCTC	1 cut(s)	869
PspN4I	GGNNCC	3 cut(s)	255, 277, 516
PspPI	GGNCC	1 cut(s)	276
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	869
SapI	GCTCTTC	1 cut(s)	142
SatI	GCNGC	6 cut(s)	25, 145, 231, 347, 432, 840
Sau3AI	GATC	5 cut(s)	158, 463, 817, 918, 922
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	2 cut(s)	31, 113
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	400, 869
SfaNI	GCATC	2 cut(s)	217, 942
SinI	GGWCC	1 cut(s)	276
SmlI	CTYRAG	3 cut(s)	17, 350, 928
SmoI	CTYRAG	3 cut(s)	17, 350, 928
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	2 cut(s)	439, 542
SseBI	AGGCCT	1 cut(s)	883
SsiI	CCGC	6 cut(s)	5, 24, 33, 144, 224, 580
SspMI	CTAG	3 cut(s)	420, 659, 744
SstI	GAGCTC	1 cut(s)	869
StuI	AGGCCT	1 cut(s)	883
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	829
TaqI	TCGA	1 cut(s)	921
TasI	AATT	2 cut(s)	439, 542
TauI	GCSGC	2 cut(s)	27, 147
TfiI	GAWTC	3 cut(s)	637, 754, 936
TseI	GCWGC	4 cut(s)	230, 346, 431, 839
TspDTI	ATGAA	3 cut(s)	492, 702, 744
TspGWI	ACGGA	1 cut(s)	712
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	276
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	2 cut(s)	117, 753
XspI	CTAG	3 cut(s)	420, 659, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.