pycom5153684g00370

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012527_4311101_to_5153684
OG0013178
Physical Location & Seq
Reverse (-)
569881 .. 570699
819 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 819 bp
ATGGCCGACCGAGTCCACCCCCGCGACTCGCCCCTACACAACGAGACGGCGCCGTTTCCTTACACCTCCTCATCGGAATCCCCCCGAAAGCCCTCCCCTCCGGAGTCCGAGAAGCCAGTCCCTCCGCCGGGCACCTACGTCATCCAGATCCCCAAGGACCAAGTCTACCGCTTCCCGCCGCCAGAGAACGCAACCCGCTACAAGAATTACACTCGTCAGAACCCTCGCCGAAGTTCCTGCCGCTGCTGCTTCTGCTGGTTCTTCGGCCTCGTTGCCGCCCTCATCCTCCTCTCCGCCGCCGCCGCCGGCATCTTCTACCTCGTGGTCCGCCCCAAATCCCCCAACTACTCAATCGATAGCATCGCGTTCAGAGGATTCAACTTGACGGCGCCGTCCCCGTCCTACGCCATCTCGCCGGAGATCCAGGTCACCGTTCGAGCCCAAAACCCTAACAAAAAGATCGGGTTCTACTACGGAAAAAAGAGCTCCGTCAAACTCTTCTACTCCGACGTCAAATTGTGCGACGGAGCTCTGCCGGCGTTTTACCAGCCGTCAAAGAACGTAACGGTGTTCCAGACGGCGTTAAAGGGGTCGGGGATCGAGCTGACGAGCACGGCACAGCAGGGGTTAGTGGATGCGCAGAAGCAGGGGAAGGTACCGTTGGGATTGGACATAAGAATGCCCGTTAGGATTAAAGTGGGGCCCATAAAGACGTGGACGATCAATGTCAAGGTTGGGTGTGATCTAACGGTGGATAAGCTGACGACGGAGGCCAAGATTGTGTCAAAGGACTGTGATTACAGTGTGGATCCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

273

Amino Acids

30.16

Weight (kDa)

9.47

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 144 - 247 1.7e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 391
AatII GACGTC 1 cut(s) 513
Acc16I TGCGCA 1 cut(s) 639
Acc65I GGTACC 1 cut(s) 655
AccB1I GGYRCC 4 cut(s) 49, 131, 388, 655
AccI GTMKAC 1 cut(s) 165
AccII CGCG 2 cut(s) 24, 365
AccIII TCCGGA 1 cut(s) 100
AclWI GGATC 5 cut(s) 142, 415, 605, 803, 816
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 3 cut(s) 50, 389, 510
AfaI GTAC 1 cut(s) 657
AfiI CCNNNNNNNGG 2 cut(s) 127, 128
AgsI TTSAA 1 cut(s) 379
AjiI CACGTC 1 cut(s) 714
AjnI CCWGG 1 cut(s) 423
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 4 cut(s) 486, 530, 604, 760
AluI AGCT 4 cut(s) 486, 530, 604, 760
Alw21I GWGCWC 3 cut(s) 488, 532, 614
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 5 cut(s) 142, 415, 605, 803, 816
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 4 cut(s) 3, 265, 701, 771
ApaI GGGCCC 1 cut(s) 705
ApeKI GCWGC 2 cut(s) 243, 246
Asp718I GGTACC 1 cut(s) 655
AspLEI GCGC 3 cut(s) 52, 391, 640
AspS9I GGNCC 4 cut(s) 157, 325, 701, 702
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 2 cut(s) 157, 325
BaeGI GKGCMC 2 cut(s) 134, 705
BamHI GGATCC 1 cut(s) 808
BanI GGYRCC 4 cut(s) 49, 131, 388, 655
BanII GRGCYC 4 cut(s) 442, 488, 532, 705
BauI CACGAG 1 cut(s) 320
Bbv12I GWGCWC 3 cut(s) 488, 532, 614
BbvI GCAGC 2 cut(s) 230, 233
BccI CCATC 1 cut(s) 416
BceAI ACGGC 7 cut(s) 37, 63, 376, 402, 535, 594, 630
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 38
BfoI RGCGCY 2 cut(s) 53, 392
BisI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
BlsI GCNGC 8 cut(s) 180, 242, 245, 248, 277, 298, 301, 304
Bme1390I CCNGG 2 cut(s) 129, 425
Bme18I GGWCC 2 cut(s) 157, 325
BmgBI CACGTC 1 cut(s) 714
BmgT120I GGNCC 4 cut(s) 157, 325, 701, 702
BmiI GGNNCC 7 cut(s) 51, 133, 390, 657, 702, 703, 810
BmrFI CCNGG 2 cut(s) 129, 425
BmsI GCATC 3 cut(s) 318, 369, 625
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 354
BsaHI GRCGYC 3 cut(s) 50, 389, 510
BsaJI CCNNGG 2 cut(s) 153, 812
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 128
Bse118I RCCGGY 2 cut(s) 305, 535
Bse1I ACTGG 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 1 cut(s) 425
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 153, 812
BseGI GGATG 3 cut(s) 141, 282, 640
BseLI CCNNNNNNNGG 2 cut(s) 127, 128
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 58, 278
BseSI GKGCMC 2 cut(s) 134, 705
BseXI GCAGC 2 cut(s) 230, 233
Bsh1236I CGCG 2 cut(s) 24, 365
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 4 cut(s) 5, 267, 703, 773
BshNI GGYRCC 4 cut(s) 49, 131, 388, 655
BshVI ATCGAT 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 3 cut(s) 488, 532, 614
BsiSI CCGG 5 cut(s) 101, 128, 306, 416, 536
BslFI GGGAC 2 cut(s) 104, 379
BslI CCNNNNNNNGG 2 cut(s) 127, 128
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 104, 379
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 4 cut(s) 5, 267, 703, 773
Bsp120I GGGCCC 1 cut(s) 701
Bsp1286I GDGCHC 6 cut(s) 134, 442, 488, 532, 614, 705
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
Bsp19I CCATGG 1 cut(s) 812
BspANI GGCC 4 cut(s) 5, 267, 703, 773
BspDI ATCGAT 1 cut(s) 354
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 2 cut(s) 24, 365
BspLI GGNNCC 7 cut(s) 51, 133, 390, 657, 702, 703, 810
BspPI GGATC 5 cut(s) 142, 415, 605, 803, 816
BspT107I GGYRCC 4 cut(s) 49, 131, 388, 655
BsrFI RCCGGY 2 cut(s) 305, 535
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 2 cut(s) 305, 535
BssECI CCNNGG 2 cut(s) 153, 812
BssMI GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
BssNI GRCGYC 3 cut(s) 50, 389, 510
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 153, 812
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 6 cut(s) 433, 568, 660, 751, 794, 803
Bst6I CTCTTC 1 cut(s) 503
BstACI GRCGYC 3 cut(s) 50, 389, 510
BstC8I GCNNGC 2 cut(s) 307, 537
BstDSI CCRYGG 1 cut(s) 812
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 3 cut(s) 141, 282, 640
BstFNI CGCG 2 cut(s) 24, 365
BstH2I RGCGCY 2 cut(s) 53, 392
BstHHI GCGC 3 cut(s) 52, 391, 640
BstKTI GATC 7 cut(s) 150, 423, 462, 600, 723, 745, 811
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 536
BstNI CCWGG 1 cut(s) 425
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 127, 423
BstSLI GKGCMC 2 cut(s) 134, 705
BstUI CGCG 2 cut(s) 24, 365
BstV1I GCAGC 2 cut(s) 230, 233
BstX2I RGATCY 3 cut(s) 147, 420, 808
BstYI RGATCY 3 cut(s) 147, 420, 808
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 4 cut(s) 5, 267, 703, 773
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 812
BtgZI GCGATG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 714
BtsCI GGATG 3 cut(s) 141, 282, 640
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 2 cut(s) 307, 537
CfoI GCGC 3 cut(s) 52, 391, 640
Cfr10I RCCGGY 2 cut(s) 305, 535
Cfr13I GGNCC 4 cut(s) 157, 325, 701, 702
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 1 cut(s) 656
CviAII CATG 1 cut(s) 813
CviQI GTAC 1 cut(s) 656
DinI GGCGCC 2 cut(s) 51, 390
DpnI GATC 7 cut(s) 149, 422, 461, 599, 722, 744, 810
DpnII GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 3 cut(s) 114, 283, 317
Ecl136II GAGCTC 2 cut(s) 486, 530
Eco130I CCWWGG 2 cut(s) 153, 812
Eco24I GRGCYC 4 cut(s) 442, 488, 532, 705
Eco47I GGWCC 2 cut(s) 157, 325
Eco53kI GAGCTC 2 cut(s) 486, 530
Eco91I GGTNACC 1 cut(s) 427
EcoICRI GAGCTC 2 cut(s) 486, 530
EcoO109I RGGNCCY 1 cut(s) 701
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 2 cut(s) 153, 812
EcoT38I GRGCYC 4 cut(s) 442, 488, 532, 705
EgeI GGCGCC 2 cut(s) 51, 390
EheI GGCGCC 2 cut(s) 51, 390
ErhI CCWWGG 2 cut(s) 153, 812
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 1 cut(s) 816
FaiI YATR 3 cut(s) 674, 707, 814
FaqI GGGAC 2 cut(s) 104, 379
FatI CATG 1 cut(s) 812
FauI CCCGC 3 cut(s) 29, 183, 203
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
FokI GGATG 3 cut(s) 128, 269, 647
FriOI GRGCYC 4 cut(s) 442, 488, 532, 705
Fsp4HI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 3 cut(s) 51, 390, 639
GluI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
HaeII RGCGCY 2 cut(s) 53, 392
HaeIII GGCC 4 cut(s) 5, 267, 703, 773
HapII CCGG 5 cut(s) 101, 128, 306, 416, 536
HhaI GCGC 3 cut(s) 52, 391, 640
Hin1I GRCGYC 3 cut(s) 50, 389, 510
Hin1II CATG 1 cut(s) 816
Hin6I GCGC 3 cut(s) 50, 389, 638
HinP1I GCGC 3 cut(s) 50, 389, 638
HinfI GANTC 5 cut(s) 12, 26, 77, 104, 375
HpaII CCGG 5 cut(s) 101, 128, 306, 416, 536
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 16, 166, 717
Hpy188I TCNGA 5 cut(s) 76, 109, 219, 371, 508
Hpy188III TCNNGA 3 cut(s) 101, 145, 574
Hpy8I GTNNAC 3 cut(s) 16, 166, 717
Hpy99I CGWCG 3 cut(s) 512, 527, 769
HpyAV CCTTC 1 cut(s) 646
HpyCH4III ACNGT 6 cut(s) 433, 568, 660, 751, 794, 803
HpyCH4IV ACGT 4 cut(s) 138, 510, 561, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 536
HpySE526I ACGT 4 cut(s) 138, 510, 561, 713
Hsp92I GRCGYC 3 cut(s) 50, 389, 510
Hsp92II CATG 1 cut(s) 816
HspAI GCGC 3 cut(s) 50, 389, 638
KasI GGCGCC 2 cut(s) 49, 388
Kpn2I TCCGGA 1 cut(s) 100
KpnI GGTACC 1 cut(s) 659
KroI GCCGGC 2 cut(s) 305, 535
KroNI GCCGGC 2 cut(s) 307, 537
Kzo9I GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
LmnI GCTCC 2 cut(s) 491, 527
Lsp1109I GCAGC 2 cut(s) 230, 233
LweI GCATC 3 cut(s) 318, 369, 625
MaeII ACGT 4 cut(s) 138, 510, 561, 713
MaeIII GTNAC 2 cut(s) 427, 562
MalI GATC 7 cut(s) 149, 422, 461, 599, 722, 744, 810
MboI GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
MboII GAAGA 3 cut(s) 253, 304, 490
MflI RGATCY 3 cut(s) 147, 420, 808
MhlI GDGCHC 6 cut(s) 134, 442, 488, 532, 614, 705
MluCI AATT 2 cut(s) 205, 515
Mly113I GGCGCC 2 cut(s) 50, 389
MlyI GAGTC 3 cut(s) 20, 21, 113
MmeI TCCRAC 1 cut(s) 531
MroI TCCGGA 1 cut(s) 100
MroNI GCCGGC 2 cut(s) 305, 535
MseI TTAA 2 cut(s) 584, 693
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 5 cut(s) 101, 128, 306, 416, 536
MspR9I CCNGG 2 cut(s) 129, 425
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 2 cut(s) 24, 365
MwoI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 536
NaeI GCCGGC 2 cut(s) 307, 537
NarI GGCGCC 2 cut(s) 50, 389
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 1 cut(s) 812
NdeII GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
NgoMIV GCCGGC 2 cut(s) 305, 535
NlaIII CATG 1 cut(s) 816
NlaIV GGNNCC 7 cut(s) 51, 133, 390, 657, 702, 703, 810
NmuCI GTSAC 1 cut(s) 427
NsbI TGCGCA 1 cut(s) 639
PctI GAATGC 1 cut(s) 684
PdiI GCCGGC 2 cut(s) 307, 537
PfeI GAWTC 2 cut(s) 77, 375
PflFI GACNNNGTC 2 cut(s) 11, 161
PkrI GCNGC 8 cut(s) 180, 242, 245, 248, 277, 298, 301, 304
PleI GAGTC 3 cut(s) 20, 20, 112
PluTI GGCGCC 2 cut(s) 53, 392
PpsI GAGTC 3 cut(s) 20, 20, 112
Psp124BI GAGCTC 2 cut(s) 488, 532
Psp6I CCWGG 1 cut(s) 423
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 7 cut(s) 51, 133, 390, 657, 702, 703, 810
PspOMI GGGCCC 1 cut(s) 701
PspPI GGNCC 4 cut(s) 157, 325, 701, 702
PsuI RGATCY 3 cut(s) 147, 420, 808
PsyI GACNNNGTC 2 cut(s) 11, 161
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 2 cut(s) 488, 532
SaqAI TTAA 2 cut(s) 584, 693
SatI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
Sau3AI GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
Sau96I GGNCC 4 cut(s) 157, 325, 701, 702
SchI GAGTC 3 cut(s) 20, 21, 113
ScrFI CCNGG 2 cut(s) 129, 425
SduI GDGCHC 6 cut(s) 134, 442, 488, 532, 614, 705
SfaNI GCATC 3 cut(s) 318, 369, 625
SfoI GGCGCC 2 cut(s) 51, 390
SinI GGWCC 2 cut(s) 157, 325
SmiMI CAYNNNNRTG 1 cut(s) 677
Sse9I AATT 2 cut(s) 205, 515
SspDI GGCGCC 2 cut(s) 49, 388
SstI GAGCTC 2 cut(s) 488, 532
StyD4I CCNGG 2 cut(s) 127, 423
StyI CCWWGG 2 cut(s) 153, 812
TaaI ACNGT 6 cut(s) 433, 568, 660, 751, 794, 803
TaiI ACGT 4 cut(s) 141, 513, 564, 716
TaqI TCGA 3 cut(s) 354, 436, 600
TaqII GACCGA 1 cut(s) 24
TasI AATT 2 cut(s) 205, 515
TauI GCSGC 6 cut(s) 181, 243, 278, 299, 302, 305
TfiI GAWTC 2 cut(s) 77, 375
Tru1I TTAA 2 cut(s) 584, 693
Tru9I TTAA 2 cut(s) 584, 693
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 2 cut(s) 243, 246
Tsp45I GTSAC 1 cut(s) 427
TspGWI ACGGA 4 cut(s) 478, 489, 540, 782
TspRI CASTG 1 cut(s) 808
Tth111I GACNNNGTC 2 cut(s) 11, 161
VpaK11BI GGWCC 2 cut(s) 157, 325
XmiI GTMKAC 1 cut(s) 165
ZraI GACGTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.