RchiOBHm_Chr7g0183401

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014729
Physical Location & Seq
Forward (+)
4301778 .. 4302543
766 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGAATTTCTTCTATTCTAAAAAAAAAAAAAAGAGTAAAGATCTCAAATCTGTTTGGGAAGCCATGGAAGAGTGCAAGAAACTCGGCCTTGCTAGAGGTATTGGAGTTAGTAACTTCACATGCAGTATGCTCGAGGAGCTTCTTTCCTTCGCCGAAATCCCTCCGGCCGTCAACCAAATGAACCCAGCTTGGCAGCTGAAGAAATTGAGGGACTTCTGCAAGGCAAAGGGTGTTCATGTCACGGCTTACTCTCCGCTCGGAGCAGCTAGGGCTAAATGGGGTGACAATAGGGTTTTGGGGTCAGATGTGATCGAAGAGATTGCCCTAGCCAGAGGAAAAACAACTGCTCAGATATCATTGAGATGGGTGTATGAACAAGGTGTGAGCATAGTAACAAAAAGCTACAACAAGGAAAGAATGAGGCAGAACCTTGACATCTTCGACTTCTGCTTGACCGAGGAGGAATTGGAGAAGATGAGTCATCTTCCACAACGGAAAGGGGTTACCTTTGCCTCACTTCTAGGACCCCATGATATCGTTCTGGAAATTGACGCAGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

187

Amino Acids

21.19

Weight (kDa)

8.82

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 7 - 160 9.5e-24 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 218
AluBI AGCT 5 cut(s) 139, 188, 196, 266, 402
AluI AGCT 5 cut(s) 139, 188, 196, 266, 402
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 85, 165
ApeKI GCWGC 2 cut(s) 193, 263
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 205, 275
BccI CCATC 1 cut(s) 357
BceAI ACGGC 2 cut(s) 152, 258
BcgI CGANNNNNNTGC 6 cut(s) 64, 98, 112, 146, 302, 336
BfaI CTAG 4 cut(s) 93, 267, 326, 521
BglII AGATCT 1 cut(s) 40
BisI GCNGC 2 cut(s) 194, 264
BlsI GCNGC 2 cut(s) 195, 265
Bme18I GGWCC 1 cut(s) 524
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 1 cut(s) 526
BsaJI CCNNGG 2 cut(s) 63, 456
BseDI CCNNGG 2 cut(s) 63, 456
BseMII CTCAG 1 cut(s) 362
BseRI GAGGAG 2 cut(s) 149, 473
BseX3I CGGCCG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 205, 275
BseYI CCCAGC 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 87, 167
BsiEI CGRYCG 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 2 cut(s) 87, 167
BsoBI CYCGRG 1 cut(s) 131
Bsp143I GATC 2 cut(s) 40, 309
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 87, 167
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 526
BsrBI CCGCTC 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 63, 456
BssMI GATC 2 cut(s) 40, 309
BssT1I CCWWGG 1 cut(s) 63
Bst6I CTCTTC 2 cut(s) 63, 309
BstDEI CTNAG 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 502
BstKTI GATC 2 cut(s) 43, 312
BstMBI GATC 2 cut(s) 40, 309
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 136, 269
BstNSI RCATGY 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 502
BstV1I GCAGC 2 cut(s) 205, 275
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BstZI CGGCCG 1 cut(s) 165
BsuRI GGCC 2 cut(s) 87, 167
BtgI CCRYGG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 524
CviAII CATG 4 cut(s) 64, 120, 236, 530
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 42, 311
DpnII GATC 2 cut(s) 40, 309
EaeI YGGCCR 1 cut(s) 165
EagI CGGCCG 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 63, 309
EarI CTCTTC 2 cut(s) 63, 309
EclXI CGGCCG 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 63
Eco32I GATATC 2 cut(s) 354, 535
Eco47I GGWCC 1 cut(s) 524
Eco52I CGGCCG 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 502
EcoRV GATATC 2 cut(s) 354, 535
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 4 cut(s) 67, 123, 239, 533
FaiI YATR 8 cut(s) 65, 121, 128, 237, 372, 389, 531, 562
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 63, 119, 235, 529
Fnu4HI GCNGC 2 cut(s) 194, 264
Fsp4HI GCNGC 2 cut(s) 194, 264
FspBI CTAG 4 cut(s) 93, 267, 326, 521
GluI GCNGC 2 cut(s) 194, 264
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 2 cut(s) 87, 167
HapII CCGG 1 cut(s) 164
Hin1II CATG 4 cut(s) 67, 123, 239, 533
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 478
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 260, 304, 351
Hpy188III TCNNGA 1 cut(s) 542
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 75, 123, 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 269
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 4 cut(s) 67, 123, 239, 533
Kzo9I GATC 2 cut(s) 40, 309
LmnI GCTCC 2 cut(s) 136, 260
LpnPI CCDG 4 cut(s) 177, 198, 343, 527
Lsp1109I GCAGC 2 cut(s) 205, 275
MaeI CTAG 4 cut(s) 93, 267, 326, 521
MaeIII GTNAC 5 cut(s) 110, 238, 281, 391, 502
MalI GATC 2 cut(s) 42, 311
MbiI CCGCTC 1 cut(s) 256
MboI GATC 2 cut(s) 40, 309
MboII GAAGA 6 cut(s) 80, 211, 326, 430, 476, 484
MflI RGATCY 1 cut(s) 40
MluCI AATT 5 cut(s) 4, 203, 464, 546, 557
MlyI GAGTC 1 cut(s) 487
MnlI CCTC 9 cut(s) 89, 127, 171, 201, 326, 414, 451, 454, 523
MroXI GAANNNNTTC 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 136, 269
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 40, 309
NlaIII CATG 4 cut(s) 67, 123, 239, 533
NlaIV GGNNCC 1 cut(s) 526
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 238, 281
NspI RCATGY 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 195, 265
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
PpuMI RGGWCCY 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 524
PspEI GGTNACC 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 524
PspPPI RGGWCCY 1 cut(s) 524
PspXI VCTCGAGB 1 cut(s) 131
PsuI RGATCY 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 361
SatI GCNGC 2 cut(s) 194, 264
Sau3AI GATC 2 cut(s) 40, 309
Sau96I GGNCC 1 cut(s) 524
SchI GAGTC 1 cut(s) 487
SetI ASST 9 cut(s) 100, 141, 190, 198, 268, 382, 404, 432, 509
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 524
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 5 cut(s) 4, 203, 464, 546, 557
SsiI CCGC 1 cut(s) 254
SspMI CTAG 4 cut(s) 93, 267, 326, 521
StyI CCWWGG 1 cut(s) 63
TaqI TCGA 3 cut(s) 132, 312, 441
TaqII GACCGA 1 cut(s) 470
TasI AATT 5 cut(s) 4, 203, 464, 546, 557
TseFI GTSAC 2 cut(s) 238, 281
TseI GCWGC 2 cut(s) 193, 263
Tsp45I GTSAC 2 cut(s) 238, 281
TspDTI ATGAA 4 cut(s) 17, 194, 224, 387
TspGWI ACGGA 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 123
XhoI CTCGAG 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 93, 267, 326, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.