Rh5CG561100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014729
Physical Location & Seq
Reverse (-)
78568744 .. 78592831
24088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG561100.1

Sequence Viewer

Length: 507 bp
ATGATTTTGCAATTGGATGTTGGCTATGAAACAAAGACCAAGGGGGAGAGGTCTGGACTGGAAACAAAGAAAACGAAAAATCTTGGTATTATTGCTGGTGTGGTTGCTCTGTACTTTCCAAAGAGGCCTTGGCAAAGAAACAATCCACCAAAACTGGAGAGGCCGTTGAATTATTGTCAACAGGAAAGAGCTATATTGGGAGATAAAATGAACTGTGAAAATGGCGCAACTGAAGGCACATATCTCACAGAAAAGAATTGGAGTCAAGGGGAAGAGCAACATTTGGGTCTAGGTTTTGATCCGAATAACTTGAATTCACTGACAGTGGAGGAGGCTGCAAAAAGGTTTTTGGAGCAGGTTGAAGCTTTGGAAAGATTCACAGAGGCAATATCTTTTGGTGGAATTAACTACGCTTTCCTGTCTTTTGATACAGACTATCAAGGTCGACGGTCACTTGCGAAATCAGATCCTAACATCACATCTCTTGCCCTTGTCATTTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.93

Weight (kDa)

5.57

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AccI GTMKAC 1 cut(s) 445
AclWI GGATC 2 cut(s) 293, 461
AcsI RAATTY 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 3 cut(s) 169, 313, 362
AluBI AGCT 2 cut(s) 191, 365
AluI AGCT 2 cut(s) 191, 365
AlwI GGATC 2 cut(s) 293, 461
AoxI GGCC 2 cut(s) 125, 161
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 313
AspLEI GCGC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 148
BfaI CTAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 39, 128
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bse1I ACTGG 2 cut(s) 63, 159
BseDI CCNNGG 2 cut(s) 39, 128
BseGI GGATG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 63, 159
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 2 cut(s) 127, 163
BsnI GGCC 2 cut(s) 127, 163
Bsp143I GATC 2 cut(s) 298, 466
BspANI GGCC 2 cut(s) 127, 163
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 2 cut(s) 293, 461
BspQI GCTCTTC 1 cut(s) 267
BsrI ACTGG 2 cut(s) 63, 159
BssECI CCNNGG 2 cut(s) 39, 128
BssMI GATC 2 cut(s) 298, 466
BssT1I CCWWGG 2 cut(s) 39, 128
Bst4CI ACNGT 3 cut(s) 215, 325, 450
Bst6I CTCTTC 1 cut(s) 267
BstF5I GGATG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 2 cut(s) 301, 469
BstMBI GATC 2 cut(s) 298, 466
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 2 cut(s) 127, 163
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 317, 330
BveI ACCTGC 1 cut(s) 346
CfoI GCGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 112
CviJI RGCY 6 cut(s) 24, 127, 163, 191, 335, 365
CviKI_1 RGCY 6 cut(s) 24, 127, 163, 191, 335, 365
CviQI GTAC 1 cut(s) 112
DpnI GATC 2 cut(s) 300, 468
DpnII GATC 2 cut(s) 298, 466
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 39, 128
Eco147I AGGCCT 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 39, 128
ErhI CCWWGG 2 cut(s) 39, 128
FaiI YATR 3 cut(s) 27, 194, 241
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 2 cut(s) 127, 163
HhaI GCGC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 2 cut(s) 179, 446
HindII GTYRAC 2 cut(s) 179, 446
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 2 cut(s) 262, 375
Hpy166II GTNNAC 2 cut(s) 179, 446
Hpy188I TCNGA 2 cut(s) 303, 466
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 179, 446
Hpy99I CGWCG 1 cut(s) 450
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 3 cut(s) 215, 325, 450
HpyCH4V TGCA 2 cut(s) 10, 338
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 2 cut(s) 298, 466
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 7 cut(s) 39, 44, 81, 140, 167, 341, 431
Lsp1109I GCAGC 1 cut(s) 322
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 450
MalI GATC 2 cut(s) 300, 468
MboI GATC 2 cut(s) 298, 466
MboII GAAGA 1 cut(s) 284
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 1 cut(s) 466
MluCI AATT 5 cut(s) 11, 169, 256, 313, 402
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 6 cut(s) 42, 117, 153, 322, 325, 376
MseI TTAA 1 cut(s) 405
MunI CAATTG 1 cut(s) 11
NdeII GATC 2 cut(s) 298, 466
NmuCI GTSAC 1 cut(s) 450
PceI AGGCCT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SalI GTCGAC 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 298, 466
SchI GAGTC 1 cut(s) 271
SetI ASST 7 cut(s) 53, 193, 295, 347, 360, 367, 445
Sse9I AATT 5 cut(s) 11, 169, 256, 313, 402
SseBI AGGCCT 1 cut(s) 127
SspMI CTAG 1 cut(s) 290
StuI AGGCCT 1 cut(s) 127
StyI CCWWGG 2 cut(s) 39, 128
TaaI ACNGT 3 cut(s) 215, 325, 450
TaqI TCGA 1 cut(s) 445
TasI AATT 5 cut(s) 11, 169, 256, 313, 402
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 324, 330
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 450
TspDTI ATGAA 3 cut(s) 42, 224, 489
TspRI CASTG 2 cut(s) 324, 330
XapI RAATTY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 445
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.