Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014729

Physical Location & Seq

Genomic Coordinates Reverse (-)

38901371 .. 38901649

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG301800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTTACTCCGGGAGGTAGATAGGTTACCAGAAAACGGCTTAACAGCTCCAATCACAAATATCAAGTCCACGAATGGGATAATATATGTTGGGAGGAGGAAAAACAAGGAAGATGTGGAGAGTGGTTCTGATGAGGAGCTTACCAAGTACGAAAGGAGGTTGAAGAAGCTGGGGTCCGGGAATGCTTTGGGTTTGGGGCGTGTGGCAGAGAAGCGACAGAATAAGGTTTTGAAGACACAGGAGAGATCGATCGATGGGAAGATGTGTTTTGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

92

Amino Acids

10.44

Weight (kDa)

9.56

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014729)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841
rosa_chinensis	RchiOBHm_Chr1g0322331 RchiOBHm_Chr7g0183401
rosa_multiflora	Rmu_sc0000195.1_g000038 Rmu_sc0002042.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221370 Rroxscaffold_7G00205030
rosa_rugosa	Rorug06G0064100
rosa_samantha	Rh1BG432600 Rh5BG301800 Rh5CG134700 Rh5CG561100 Rh7BG428900 Rh7CG060500 Rh7CG491900 Rh7DG058600 Rh7DG419100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	35, 75
AgsI	TTSAA	2 cut(s)	163, 232
AluBI	AGCT	3 cut(s)	47, 139, 169
AluI	AGCT	3 cut(s)	47, 139, 169
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	11, 178
AvaII	GGWCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	239
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	2 cut(s)	11, 178
Bme1390I	CCNGG	2 cut(s)	11, 178
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	11, 178
BpiI	GAAGAC	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	11, 178
Bsa29I	ATCGAT	2 cut(s)	248, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 75
BseCI	ATCGAT	2 cut(s)	248, 252
BseLI	CCNNNNNNNGG	2 cut(s)	35, 75
BseRI	GAGGAG	2 cut(s)	109, 149
BseYI	CCCAGC	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	252
BshVI	ATCGAT	2 cut(s)	248, 252
BsiEI	CGRYCG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	10, 177
BslI	CCNNNNNNNGG	2 cut(s)	35, 75
BsmI	GAATGC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	245, 249
BspDI	ATCGAT	2 cut(s)	248, 252
BspLI	GGNNCC	1 cut(s)	175
BssMI	GATC	2 cut(s)	245, 249
BstEII	GGTNACC	1 cut(s)	24
BstKTI	GATC	2 cut(s)	248, 252
BstMBI	GATC	2 cut(s)	245, 249
BstMCI	CGRYCG	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	9, 176
BstV2I	GAAGAC	1 cut(s)	239
Bsu15I	ATCGAT	2 cut(s)	248, 252
BsuTUI	ATCGAT	2 cut(s)	248, 252
Cfr13I	GGNCC	1 cut(s)	174
ClaI	ATCGAT	2 cut(s)	248, 252
Csp6I	GTAC	1 cut(s)	148
CviJI	RGCY	4 cut(s)	39, 47, 139, 169
CviKI_1	RGCY	4 cut(s)	39, 47, 139, 169
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	2 cut(s)	247, 251
DpnII	GATC	2 cut(s)	245, 249
Eco47I	GGWCC	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	24
FaiI	YATR	2 cut(s)	85, 87
GsaI	CCCAGC	1 cut(s)	173
HapII	CCGG	2 cut(s)	10, 177
HpaII	CCGG	2 cut(s)	10, 177
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	245, 249
LmnI	GCTCC	2 cut(s)	52, 136
LpnPI	CCDG	5 cut(s)	23, 42, 155, 190, 224
MaeIII	GTNAC	2 cut(s)	3, 24
MalI	GATC	2 cut(s)	247, 251
MboI	GATC	2 cut(s)	245, 249
MboII	GAAGA	4 cut(s)	122, 175, 244, 271
MnlI	CCTC	5 cut(s)	7, 87, 90, 127, 150
MseI	TTAA	1 cut(s)	41
MspI	CCGG	2 cut(s)	10, 177
MspR9I	CCNGG	2 cut(s)	11, 178
Mva1269I	GAATGC	1 cut(s)	187
NciI	CCSGG	2 cut(s)	11, 178
NdeII	GATC	2 cut(s)	245, 249
NlaIV	GGNNCC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	187
PfoI	TCCNGGA	2 cut(s)	9, 176
Ple19I	CGATCG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	174
PvuI	CGATCG	1 cut(s)	252
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	245, 249
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	11, 178
SetI	ASST	7 cut(s)	18, 26, 49, 141, 161, 171, 228
SinI	GGWCC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	9, 176
TaqI	TCGA	2 cut(s)	248, 252
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.