Rh7DG058600

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014729
Physical Location & Seq
Forward (+)
4476925 .. 4477415
491 bp
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UTR
Exon/CDS
Intron
Rh7DG058600.1

Sequence Viewer

Length: 387 bp
ATGAACCCAGCTTGGCAGCTGAAGAAATTGAGGGACTTCTGCAAGGCAAAGGGTGTTCATGTCACGGCTTACTCTCCGCTCGGAGCAGCTAGGGCTAAATGGGGTGACAATAGGGTTTTGGGGTCAGATGTGATCGAAGAGATTGCCCTAGCCAGAGGAAAAACAACTGCTCAGATATCATTGAGATGGGTGTATGAACAAGGTGTGAGCATAGTAACAAAAAGCTACAACAAGGAAAGAATGAGGCAGAACCTTGACATCTTCGACTTCTGCTTGACCGAGGAGGAATTGGAGAAGATGAGTCATCTTCCACAACGGAAAGGGGTTACCTTTGCCTCACTTCTAGGACCCCATGATATCGTTCTGGAAATTGACGCAGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

128

Amino Acids

14.5

Weight (kDa)

7.78

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 6 - 101 3.1e-11 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 79
AciI CCGC 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 41
AluBI AGCT 4 cut(s) 11, 19, 89, 225
AluI AGCT 4 cut(s) 11, 19, 89, 225
ApeKI GCWGC 2 cut(s) 16, 86
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 347
BbvI GCAGC 2 cut(s) 28, 98
BccI CCATC 1 cut(s) 180
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BfaI CTAG 3 cut(s) 90, 149, 344
BisI GCNGC 2 cut(s) 17, 87
BlsI GCNGC 2 cut(s) 18, 88
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 28, 98
BseYI CCCAGC 1 cut(s) 7
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 171
BstEII GGTNACC 1 cut(s) 325
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstPI GGTNACC 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 28, 98
Cfr13I GGNCC 1 cut(s) 347
CviAII CATG 2 cut(s) 59, 353
CviJI RGCY 7 cut(s) 11, 19, 68, 89, 95, 152, 225
CviKI_1 RGCY 7 cut(s) 11, 19, 68, 89, 95, 152, 225
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco32I GATATC 2 cut(s) 177, 358
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 325
EcoRV GATATC 2 cut(s) 177, 358
FaeI CATG 2 cut(s) 62, 356
FaiI YATR 5 cut(s) 60, 195, 212, 354, 385
FaqI GGGAC 1 cut(s) 47
FatI CATG 2 cut(s) 58, 352
Fnu4HI GCNGC 2 cut(s) 17, 87
Fsp4HI GCNGC 2 cut(s) 17, 87
FspBI CTAG 3 cut(s) 90, 149, 344
GluI GCNGC 2 cut(s) 17, 87
GsaI CCCAGC 1 cut(s) 11
Hin1II CATG 2 cut(s) 62, 356
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 83, 127, 174
Hpy188III TCNNGA 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 2 cut(s) 62, 356
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 21, 166, 350
Lsp1109I GCAGC 2 cut(s) 28, 98
MaeI CTAG 3 cut(s) 90, 149, 344
MaeIII GTNAC 4 cut(s) 61, 104, 214, 325
MalI GATC 1 cut(s) 134
MbiI CCGCTC 1 cut(s) 79
MboI GATC 1 cut(s) 132
MboII GAAGA 5 cut(s) 34, 149, 253, 299, 307
MluCI AATT 4 cut(s) 26, 287, 369, 380
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 6 cut(s) 24, 149, 237, 274, 277, 346
MslI CAYNNNNRTG 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 132
NlaIII CATG 2 cut(s) 62, 356
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 61, 104
PkrI GCNGC 2 cut(s) 18, 88
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
PspEI GGTNACC 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 347
PspPPI RGGWCCY 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 184
SatI GCNGC 2 cut(s) 17, 87
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 310
SetI ASST 7 cut(s) 13, 21, 91, 205, 227, 255, 332
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 184
Sse9I AATT 4 cut(s) 26, 287, 369, 380
SsiI CCGC 1 cut(s) 77
SspMI CTAG 3 cut(s) 90, 149, 344
TaqI TCGA 2 cut(s) 135, 264
TaqII GACCGA 1 cut(s) 293
TasI AATT 4 cut(s) 26, 287, 369, 380
TseFI GTSAC 2 cut(s) 61, 104
TseI GCWGC 2 cut(s) 16, 86
Tsp45I GTSAC 2 cut(s) 61, 104
TspDTI ATGAA 3 cut(s) 17, 47, 210
TspGWI ACGGA 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 347
XspI CTAG 3 cut(s) 90, 149, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.