Rh7CG060500

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014729
Physical Location & Seq
Forward (+)
4350808 .. 4352832
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG060500.1

Sequence Viewer

Length: 645 bp
ATGACTATGAATCTTCAACTAGAGTATATTGACATGTACATCATACATTGGCCTTTCAAATTGGGAAAAGAGGTGAAAAGCATGCCTGTTGAGAGAGATCTGGTGCAGCCCCTTGATCTCAAATCTGTTTGGGAAGCCAAGGAAGAGTGCAAGAAACTTGGCCTTGCTAGAGGTATTGGCGTCAGTAACTTCACATGCAGTATGCTCGAGGAGCTTCTTTCCTTCGCCGAAATCCCTCCGGCCGTCAACCAATTGGAGATGAACCCAGCTTGGCAGCTGAAGAAATTGAGGGACTTCTGCAAGGCAAAGGGTGTTCATGTCACGGCTTACTCTCCGTTCGGAGCAGCTAGGACTAAATGGGGTGACAATAGGGTTTTGGGGTCAGATGTGATCGAAGAGATTGCCCTAGCCAGAGGAAAAACAACCGCTCAGATATCATTGAGATGGGTGTATGAACAAGGTGTGAGCATTGTAACAAAAAGCTACAACAAGGAAAGAATGAGGCAGAACCTTGACATCTTCGACTTCTGCTTGACCGAGGAGGAATTGGAGAAGATGAGTCATCTTCCACAACGGAAAGGGGTTACCTTTGCCTCACTTCTAGGACCCCATGATATCGTTCTGGAAATTGACGCAGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

214

Amino Acids

24.43

Weight (kDa)

5.88

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 4 - 187 2.2e-30 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 1 cut(s) 426
AcoI YGGCCR 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 17, 58
AluBI AGCT 5 cut(s) 214, 269, 277, 347, 483
AluI AGCT 5 cut(s) 214, 269, 277, 347, 483
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 50, 160, 240
ApeKI GCWGC 3 cut(s) 106, 274, 344
AspS9I GGNCC 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 85, 374
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 605
BbvI GCAGC 3 cut(s) 118, 286, 356
BccI CCATC 1 cut(s) 438
BceAI ACGGC 2 cut(s) 227, 339
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 383, 417
BfaI CTAG 5 cut(s) 20, 168, 348, 407, 602
BglII AGATCT 1 cut(s) 97
BisI GCNGC 3 cut(s) 107, 275, 345
BlsI GCNGC 3 cut(s) 108, 276, 346
Bme18I GGWCC 1 cut(s) 605
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 138, 537
BseDI CCNNGG 2 cut(s) 138, 537
BseMII CTCAG 1 cut(s) 443
BseRI GAGGAG 2 cut(s) 224, 554
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 118, 286, 356
BseYI CCCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 52, 162, 242
BsiEI CGRYCG 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 3 cut(s) 52, 162, 242
BsoBI CYCGRG 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 36
Bsp143I GATC 3 cut(s) 97, 115, 390
BspACI CCGC 1 cut(s) 426
BspANI GGCC 3 cut(s) 52, 162, 242
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 607
BsrBI CCGCTC 1 cut(s) 428
BsrGI TGTACA 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 138, 537
BssMI GATC 3 cut(s) 97, 115, 390
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 138, 390
BstACI GRCGYC 1 cut(s) 180
BstAUI TGTACA 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 429
BstEII GGTNACC 1 cut(s) 583
BstKTI GATC 3 cut(s) 100, 118, 393
BstMBI GATC 3 cut(s) 97, 115, 390
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNSI RCATGY 3 cut(s) 37, 85, 198
BstPI GGTNACC 1 cut(s) 583
BstV1I GCAGC 3 cut(s) 118, 286, 356
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BstZI CGGCCG 1 cut(s) 240
BsuRI GGCC 3 cut(s) 52, 162, 242
Cac8I GCNNGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 605
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 37
CviAII CATG 5 cut(s) 34, 82, 195, 317, 611
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 429
DpnI GATC 3 cut(s) 99, 117, 392
DpnII GATC 3 cut(s) 97, 115, 390
EaeI YGGCCR 1 cut(s) 240
EagI CGGCCG 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 138, 390
EarI CTCTTC 2 cut(s) 138, 390
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 138
Eco32I GATATC 2 cut(s) 435, 616
Eco47I GGWCC 1 cut(s) 605
Eco52I CGGCCG 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 206
Eco91I GGTNACC 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 605
EcoO65I GGTNACC 1 cut(s) 583
EcoRV GATATC 2 cut(s) 435, 616
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 5 cut(s) 37, 85, 198, 320, 614
FaqI GGGAC 1 cut(s) 305
FatI CATG 5 cut(s) 33, 81, 194, 316, 610
Fnu4HI GCNGC 3 cut(s) 107, 275, 345
Fsp4HI GCNGC 3 cut(s) 107, 275, 345
FspBI CTAG 5 cut(s) 20, 168, 348, 407, 602
GluI GCNGC 3 cut(s) 107, 275, 345
GsaI CCCAGC 1 cut(s) 269
HaeIII GGCC 3 cut(s) 52, 162, 242
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 5 cut(s) 37, 85, 198, 320, 614
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 10, 559
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 85, 374
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 341, 385, 432
Hpy188III TCNNGA 1 cut(s) 623
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 106, 150, 198, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 429
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 5 cut(s) 37, 85, 198, 320, 614
Kzo9I GATC 3 cut(s) 97, 115, 390
LmnI GCTCC 2 cut(s) 211, 341
LpnPI CCDG 6 cut(s) 86, 99, 252, 279, 424, 608
Lsp1109I GCAGC 3 cut(s) 118, 286, 356
MaeI CTAG 5 cut(s) 20, 168, 348, 407, 602
MaeIII GTNAC 5 cut(s) 185, 319, 362, 472, 583
MalI GATC 3 cut(s) 99, 117, 392
MbiI CCGCTC 1 cut(s) 428
MboI GATC 3 cut(s) 97, 115, 390
MboII GAAGA 7 cut(s) 5, 155, 292, 407, 511, 557, 565
MfeI CAATTG 1 cut(s) 251
MflI RGATCY 1 cut(s) 97
MluCI AATT 6 cut(s) 59, 251, 284, 545, 627, 638
MlyI GAGTC 1 cut(s) 568
MslI CAYNNNNRTG 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 239
MunI CAATTG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 3 cut(s) 97, 115, 390
NlaIII CATG 5 cut(s) 37, 85, 198, 320, 614
NlaIV GGNNCC 1 cut(s) 607
NmuCI GTSAC 2 cut(s) 319, 362
NspI RCATGY 3 cut(s) 37, 85, 198
PaeI GCATGC 1 cut(s) 85
PaeR7I CTCGAG 1 cut(s) 206
PciI ACATGT 1 cut(s) 33
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 3 cut(s) 108, 276, 346
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PpuMI RGGWCCY 1 cut(s) 605
PscI ACATGT 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 605
PspEI GGTNACC 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 1 cut(s) 605
PspPPI RGGWCCY 1 cut(s) 605
PspXI VCTCGAGB 1 cut(s) 206
PsuI RGATCY 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 442
SatI GCNGC 3 cut(s) 107, 275, 345
Sau3AI GATC 3 cut(s) 97, 115, 390
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 1 cut(s) 568
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 1 cut(s) 605
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SphI GCATGC 1 cut(s) 85
Sse9I AATT 6 cut(s) 59, 251, 284, 545, 627, 638
SsiI CCGC 1 cut(s) 426
SspMI CTAG 5 cut(s) 20, 168, 348, 407, 602
StyI CCWWGG 1 cut(s) 138
TaqI TCGA 3 cut(s) 207, 393, 522
TaqII GACCGA 1 cut(s) 551
TasI AATT 6 cut(s) 59, 251, 284, 545, 627, 638
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 10
TseFI GTSAC 2 cut(s) 319, 362
TseI GCWGC 3 cut(s) 106, 274, 344
Tsp45I GTSAC 2 cut(s) 319, 362
TspDTI ATGAA 4 cut(s) 23, 275, 305, 468
TspGWI ACGGA 2 cut(s) 324, 589
VpaK11BI GGWCC 1 cut(s) 605
XceI RCATGY 3 cut(s) 37, 85, 198
XhoI CTCGAG 1 cut(s) 206
XspI CTAG 5 cut(s) 20, 168, 348, 407, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.