U3 small nucleolar RNA-associated
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g35841 |
| rosa_chinensis | RchiOBHm_Chr1g0322331 RchiOBHm_Chr7g0183401 |
| rosa_multiflora | Rmu_sc0000195.1_g000038 Rmu_sc0002042.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00221370 Rroxscaffold_7G00205030 |
| rosa_rugosa | Rorug06G0064100 |
| rosa_samantha | Rh1BG432600 Rh5BG301800 Rh5CG134700 Rh5CG561100 Rh7BG428900 Rh7CG060500 Rh7CG491900 Rh7DG058600 Rh7DG419100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 128 |
| AfaI | GTAC | 1 cut(s) | 71 |
| AgsI | TTSAA | 2 cut(s) | 85, 154 |
| AluBI | AGCT | 3 cut(s) | 61, 91, 181 |
| AluI | AGCT | 3 cut(s) | 61, 91, 181 |
| AspS9I | GGNCC | 1 cut(s) | 96 |
| AsuC2I | CCSGG | 1 cut(s) | 100 |
| AvaII | GGWCC | 1 cut(s) | 96 |
| BbsI | GAAGAC | 1 cut(s) | 161 |
| BbvCI | CCTCAGC | 1 cut(s) | 182 |
| BcnI | CCSGG | 1 cut(s) | 100 |
| BglII | AGATCT | 1 cut(s) | 34 |
| Bme1390I | CCNGG | 1 cut(s) | 100 |
| Bme18I | GGWCC | 1 cut(s) | 96 |
| BmgT120I | GGNCC | 1 cut(s) | 96 |
| BmiI | GGNNCC | 1 cut(s) | 97 |
| BmrFI | CCNGG | 1 cut(s) | 100 |
| BpiI | GAAGAC | 1 cut(s) | 161 |
| BpmI | CTGGAG | 1 cut(s) | 59 |
| Bpu10I | CCTNAGC | 1 cut(s) | 182 |
| BpuMI | CCSGG | 1 cut(s) | 100 |
| Bsa29I | ATCGAT | 2 cut(s) | 170, 174 |
| BseCI | ATCGAT | 2 cut(s) | 170, 174 |
| BseMII | CTCAG | 1 cut(s) | 173 |
| BseRI | GAGGAG | 3 cut(s) | 31, 71, 146 |
| BseYI | CCCAGC | 1 cut(s) | 91 |
| Bsh1285I | CGRYCG | 1 cut(s) | 174 |
| BshVI | ATCGAT | 2 cut(s) | 170, 174 |
| BsiEI | CGRYCG | 1 cut(s) | 174 |
| BsiSI | CCGG | 1 cut(s) | 99 |
| BsmI | GAATGC | 1 cut(s) | 109 |
| Bsp143I | GATC | 3 cut(s) | 34, 167, 171 |
| BspACI | CCGC | 1 cut(s) | 128 |
| BspCNI | CTCAG | 1 cut(s) | 174 |
| BspDI | ATCGAT | 2 cut(s) | 170, 174 |
| BspLI | GGNNCC | 1 cut(s) | 97 |
| BssMI | GATC | 3 cut(s) | 34, 167, 171 |
| Bst6I | CTCTTC | 1 cut(s) | 158 |
| BstDEI | CTNAG | 1 cut(s) | 182 |
| BstKTI | GATC | 3 cut(s) | 37, 170, 174 |
| BstMBI | GATC | 3 cut(s) | 34, 167, 171 |
| BstMCI | CGRYCG | 1 cut(s) | 174 |
| BstSCI | CCNGG | 1 cut(s) | 98 |
| BstV2I | GAAGAC | 1 cut(s) | 161 |
| BstX2I | RGATCY | 1 cut(s) | 34 |
| BstYI | RGATCY | 1 cut(s) | 34 |
| Bsu15I | ATCGAT | 2 cut(s) | 170, 174 |
| BsuTUI | ATCGAT | 2 cut(s) | 170, 174 |
| Cfr13I | GGNCC | 1 cut(s) | 96 |
| ClaI | ATCGAT | 2 cut(s) | 170, 174 |
| Csp6I | GTAC | 1 cut(s) | 70 |
| CviJI | RGCY | 3 cut(s) | 61, 91, 181 |
| CviKI_1 | RGCY | 3 cut(s) | 61, 91, 181 |
| CviQI | GTAC | 1 cut(s) | 70 |
| DdeI | CTNAG | 1 cut(s) | 182 |
| DpnI | GATC | 3 cut(s) | 36, 169, 173 |
| DpnII | GATC | 3 cut(s) | 34, 167, 171 |
| Eam1104I | CTCTTC | 1 cut(s) | 158 |
| EarI | CTCTTC | 1 cut(s) | 158 |
| EciI | GGCGGA | 1 cut(s) | 143 |
| Eco47I | GGWCC | 1 cut(s) | 96 |
| FaiI | YATR | 2 cut(s) | 7, 9 |
| GsaI | CCCAGC | 1 cut(s) | 95 |
| GsuI | CTGGAG | 1 cut(s) | 59 |
| HapII | CCGG | 1 cut(s) | 99 |
| HinfI | GANTC | 1 cut(s) | 142 |
| HpaII | CCGG | 1 cut(s) | 99 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| Hpy99I | CGWCG | 1 cut(s) | 141 |
| HpyF3I | CTNAG | 1 cut(s) | 182 |
| Kzo9I | GATC | 3 cut(s) | 34, 167, 171 |
| LmnI | GCTCC | 2 cut(s) | 58, 133 |
| LpnPI | CCDG | 3 cut(s) | 23, 77, 112 |
| MalI | GATC | 3 cut(s) | 36, 169, 173 |
| MboI | GATC | 3 cut(s) | 34, 167, 171 |
| MboII | GAAGA | 4 cut(s) | 44, 97, 166, 175 |
| MflI | RGATCY | 1 cut(s) | 34 |
| MnlI | CCTC | 6 cut(s) | 9, 12, 49, 72, 124, 177 |
| MspI | CCGG | 1 cut(s) | 99 |
| MspR9I | CCNGG | 1 cut(s) | 100 |
| Mva1269I | GAATGC | 1 cut(s) | 109 |
| NciI | CCSGG | 1 cut(s) | 100 |
| NdeII | GATC | 3 cut(s) | 34, 167, 171 |
| NlaIV | GGNNCC | 1 cut(s) | 97 |
| PctI | GAATGC | 1 cut(s) | 109 |
| PfeI | GAWTC | 1 cut(s) | 142 |
| PfoI | TCCNGGA | 1 cut(s) | 98 |
| Ple19I | CGATCG | 1 cut(s) | 174 |
| PspFI | CCCAGC | 1 cut(s) | 91 |
| PspN4I | GGNNCC | 1 cut(s) | 97 |
| PspPI | GGNCC | 1 cut(s) | 96 |
| PsuI | RGATCY | 1 cut(s) | 34 |
| PvuI | CGATCG | 1 cut(s) | 174 |
| RsaI | GTAC | 1 cut(s) | 71 |
| RsaNI | GTAC | 1 cut(s) | 70 |
| Sau3AI | GATC | 3 cut(s) | 34, 167, 171 |
| Sau96I | GGNCC | 1 cut(s) | 96 |
| ScrFI | CCNGG | 1 cut(s) | 100 |
| SetI | ASST | 5 cut(s) | 63, 83, 93, 183, 188 |
| SgeI | CNNG | 8 cut(s) | 40, 50, 79, 104, 111, 112, 134, 158 |
| SinI | GGWCC | 1 cut(s) | 96 |
| SsiI | CCGC | 1 cut(s) | 128 |
| StyD4I | CCNGG | 1 cut(s) | 98 |
| TaqI | TCGA | 2 cut(s) | 170, 174 |
| TfiI | GAWTC | 1 cut(s) | 142 |
| TspGWI | ACGGA | 1 cut(s) | 154 |
| VpaK11BI | GGWCC | 1 cut(s) | 96 |