Rroxscaffold_7G00205030

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
54536442 .. 54538784
2343 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00205030.1

Sequence Viewer

Length: 153 bp
ATGTCCCAAAAAACATCCATGAGGAGTTGGGTTTTGAAGAGACAGAGAGATCGATCCGGGAATGCTTTGGGTTTGGGGCGTGTGGCGGAGGAGCGACGGAGTTGGGTTTTGAATCCTCTTGAGAGATCGATTGATGGTTTGCTTTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.84

Weight (kDa)

11.54

Isoelectric Point (pI)

78.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 48
AgsI TTSAA 2 cut(s) 37, 112
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 58
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 58
Bsa29I ATCGAT 2 cut(s) 52, 128
BseCI ATCGAT 2 cut(s) 52, 128
BseGI GGATG 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 37, 104
BshVI ATCGAT 2 cut(s) 52, 128
BsiSI CCGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 67
Bsp143I GATC 3 cut(s) 49, 53, 125
BspACI CCGC 1 cut(s) 86
BspDI ATCGAT 2 cut(s) 52, 128
BspPI GGATC 1 cut(s) 48
BssMI GATC 3 cut(s) 49, 53, 125
Bst6I CTCTTC 1 cut(s) 32
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 52, 56, 128
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 49, 53, 125
BstSCI CCNGG 1 cut(s) 56
Bsu15I ATCGAT 2 cut(s) 52, 128
BsuTUI ATCGAT 2 cut(s) 52, 128
BtsCI GGATG 1 cut(s) 14
ClaI ATCGAT 2 cut(s) 52, 128
CviAII CATG 1 cut(s) 19
DpnI GATC 3 cut(s) 51, 55, 127
DpnII GATC 3 cut(s) 49, 53, 125
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 101
FaeI CATG 1 cut(s) 22
FaiI YATR 1 cut(s) 20
FatI CATG 1 cut(s) 18
HapII CCGG 1 cut(s) 57
Hin1II CATG 1 cut(s) 22
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 3 cut(s) 49, 53, 125
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 1 cut(s) 70
MalI GATC 3 cut(s) 51, 55, 127
MboI GATC 3 cut(s) 49, 53, 125
MboII GAAGA 1 cut(s) 49
MnlI CCTC 3 cut(s) 15, 82, 126
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 58
NdeII GATC 3 cut(s) 49, 53, 125
NlaIII CATG 1 cut(s) 22
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 56
Sau3AI GATC 3 cut(s) 49, 53, 125
ScrFI CCNGG 1 cut(s) 58
SgeI CNNG 5 cut(s) 31, 69, 70, 92, 131
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SsiI CCGC 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 56
TaqI TCGA 2 cut(s) 52, 128
TfiI GAWTC 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.