Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002042.1

Orthogroup ID

OG0014729

Physical Location & Seq

Genomic Coordinates Reverse (-)

9173 .. 9739

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002042.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgccaccatggtcaagtccaggcagacccaaggtattatcacctcaattgcagagatcgttgagatgggtatatgagcaaggggtgagcatggtagcgaaaagctacaacaaagaaagaatgaggcagaaccttgatatcttcgactggtccttgactgaggaggagttgcagaagatgagtcgtctttcacatatcaaaggcttctccacaaatatcacgtccacgaatgggataatatatgctgggaggaggaaaaacaaggaagatgtggagagtggttctgatgaggagcttaccaagtacgaaaggaggttgaagaagctgggatccgggaatgctttgggtttggggcgtgtggcggaggagcgacggaatcgggttttgaagacacaggagagatcgatcgatgggaagatgtgttttgagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

144

Amino Acids

16.7

Weight (kDa)

9.78

Isoelectric Point (pI)

79.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014729)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841
rosa_chinensis	RchiOBHm_Chr1g0322331 RchiOBHm_Chr7g0183401
rosa_multiflora	Rmu_sc0000195.1_g000038 Rmu_sc0002042.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221370 Rroxscaffold_7G00205030
rosa_rugosa	Rorug06G0064100
rosa_samantha	Rh1BG432600 Rh5BG301800 Rh5CG134700 Rh5CG561100 Rh7BG428900 Rh7CG060500 Rh7CG491900 Rh7DG058600 Rh7DG419100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	324, 337
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	319, 388
AjiI	CACGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	3 cut(s)	105, 295, 325
AluI	AGCT	3 cut(s)	105, 295, 325
AlwI	GGATC	2 cut(s)	324, 337
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	33, 97
AvaII	GGWCC	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	395
BccI	CCATC	2 cut(s)	60, 404
BciT130I	CCWGG	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	21, 334
Bme18I	GGWCC	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	2 cut(s)	21, 334
BpiI	GAAGAC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	334
Bsa29I	ATCGAT	2 cut(s)	404, 408
BsaJI	CCNNGG	2 cut(s)	8, 30
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	21
BseCI	ATCGAT	2 cut(s)	404, 408
BseDI	CCNNGG	2 cut(s)	8, 30
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	5 cut(s)	176, 179, 265, 305, 380
BseYI	CCCAGC	2 cut(s)	245, 325
Bsh1285I	CGRYCG	1 cut(s)	408
BshVI	ATCGAT	2 cut(s)	404, 408
BsiEI	CGRYCG	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	343
Bsp143I	GATC	4 cut(s)	56, 329, 401, 405
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	2 cut(s)	404, 408
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	324, 337
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	8, 30
BssMI	GATC	4 cut(s)	56, 329, 401, 405
BssT1I	CCWWGG	2 cut(s)	8, 30
Bst2UI	CCWGG	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	8
BstKTI	GATC	4 cut(s)	59, 332, 404, 408
BstMBI	GATC	4 cut(s)	56, 329, 401, 405
BstMCI	CGRYCG	1 cut(s)	408
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	19, 332
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
Bsu15I	ATCGAT	2 cut(s)	404, 408
BsuTUI	ATCGAT	2 cut(s)	404, 408
BtgI	CCRYGG	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	150
ClaI	ATCGAT	2 cut(s)	404, 408
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	2 cut(s)	9, 91
CviJI	RGCY	4 cut(s)	105, 204, 295, 325
CviKI_1	RGCY	4 cut(s)	105, 204, 295, 325
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	4 cut(s)	58, 331, 403, 407
DpnII	GATC	4 cut(s)	56, 329, 401, 405
EciI	GGCGGA	1 cut(s)	377
Eco130I	CCWWGG	2 cut(s)	8, 30
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	8, 30
ErhI	CCWWGG	2 cut(s)	8, 30
FaeI	CATG	2 cut(s)	12, 94
FaiI	YATR	7 cut(s)	10, 73, 75, 92, 195, 241, 243
FatI	CATG	2 cut(s)	8, 90
GsaI	CCCAGC	2 cut(s)	249, 329
HapII	CCGG	1 cut(s)	333
Hin1II	CATG	2 cut(s)	12, 94
HinfI	GANTC	2 cut(s)	181, 376
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	33, 97
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	52, 172
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	12, 94
Kzo9I	GATC	4 cut(s)	56, 329, 401, 405
LmnI	GCTCC	2 cut(s)	292, 367
LpnPI	CCDG	7 cut(s)	6, 33, 133, 231, 311, 346, 380
MaeII	ACGT	1 cut(s)	221
MalI	GATC	4 cut(s)	58, 331, 403, 407
MboI	GATC	4 cut(s)	56, 329, 401, 405
MboII	GAAGA	6 cut(s)	133, 187, 278, 331, 400, 427
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	9 cut(s)	54, 117, 154, 157, 243, 246, 283, 306, 358
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	21, 334
MunI	CAATTG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	21
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	8
NdeII	GATC	4 cut(s)	56, 329, 401, 405
NlaIII	CATG	2 cut(s)	12, 94
NlaIV	GGNNCC	1 cut(s)	331
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	332
Ple19I	CGATCG	1 cut(s)	408
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	19
PspFI	CCCAGC	2 cut(s)	245, 325
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	329
PvuI	CGATCG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
Sau3AI	GATC	4 cut(s)	56, 329, 401, 405
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	21, 334
SetI	ASST	8 cut(s)	36, 46, 107, 135, 224, 297, 317, 327
SinI	GGWCC	1 cut(s)	150
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	19, 332
StyI	CCWWGG	2 cut(s)	8, 30
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	144, 404, 408
TasI	AATT	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	376
TspGWI	ACGGA	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.