Rmu_sc0000195.1_g000038

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000195.1
OG0014729
Physical Location & Seq
Reverse (-)
120788 .. 121054
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000195.1_g000038.1.cds

Sequence Viewer

Length: 267 bp
atgccaccatcgtcaagtccaggcagacccaaggtattatcacctcaattgcagatatcgttgagatgggtatatgagaaaggggtgagcatggtagcgaaaagctacaacaaagaaagaataaggcagaaccttgatatcttcgactggtccttgactgaggaggagttgcagaagatgagtcgtctttcacagatcaaaggcttcgtttttgcttcacttttgggacagcatgatctgctgcttcagattgacactagattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

88

Amino Acids

10.17

Weight (kDa)

9.52

Isoelectric Point (pI)

78.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 230
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 33, 97
AvaII GGWCC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 228
BccI CCATC 2 cut(s) 16, 60
BciT130I CCWGG 1 cut(s) 21
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 176, 179
BseXI GCAGC 1 cut(s) 228
BslFI GGGAC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 195, 235
BspCNI CTCAG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 195, 235
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 159
BstKTI GATC 2 cut(s) 198, 238
BstMBI GATC 2 cut(s) 195, 235
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 150
CviAII CATG 2 cut(s) 91, 233
CviJI RGCY 2 cut(s) 105, 204
CviKI_1 RGCY 2 cut(s) 105, 204
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 197, 237
DpnII GATC 2 cut(s) 195, 235
Eco130I CCWWGG 1 cut(s) 30
Eco32I GATATC 2 cut(s) 57, 139
Eco47I GGWCC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 19
EcoRV GATATC 2 cut(s) 57, 139
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 2 cut(s) 94, 236
FaiI YATR 5 cut(s) 73, 75, 92, 234, 265
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 90, 232
Fnu4HI GCNGC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 242
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 242
Hin1II CATG 2 cut(s) 94, 236
HinfI GANTC 1 cut(s) 181
HphI GGTGA 2 cut(s) 33, 97
Hpy188I TCNGA 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 52, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 2 cut(s) 94, 236
Kzo9I GATC 2 cut(s) 195, 235
LpnPI CCDG 3 cut(s) 6, 33, 133
Lsp1109I GCAGC 1 cut(s) 228
MaeI CTAG 1 cut(s) 258
MalI GATC 2 cut(s) 197, 237
MboI GATC 2 cut(s) 195, 235
MboII GAAGA 2 cut(s) 133, 187
MfeI CAATTG 1 cut(s) 47
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 3 cut(s) 54, 154, 157
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeII GATC 2 cut(s) 195, 235
NlaIII CATG 2 cut(s) 94, 236
PkrI GCNGC 1 cut(s) 243
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 150
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 2 cut(s) 195, 235
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 21
SetI ASST 4 cut(s) 36, 46, 107, 135
SgeI CNNG 9 cut(s) 27, 32, 33, 43, 103, 146, 160, 166, 245
SinI GGWCC 1 cut(s) 150
Sse9I AATT 1 cut(s) 47
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 30
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 47
TseI GCWGC 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 150
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.