RchiOBHm_Chr7g0204551

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005420
Physical Location & Seq
Reverse (-)
22233240 .. 22238844
5605 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGCGGTTGTTCCCTTTGAACTCGAGCCCGAGCTCGAGCTCTAGCTCTAGCGTAGAGAAGGAGCAGCAGACTGATCGGAAAAGGACTCGCGCCCATTTGTACCTCAATGTCTACGATCTCACCCCTGTAAATAACTATCTTTACTGGTTCGGATTTGGGGTCTTCCACTCTGGCATCGAAGTGCATGGCATGGAGTATGGCTTTGGAGCCCATGAGTATCCTAGCAGTGGAGTTTTTGAGGTCGAACCAAGAAGTTGCCCTGGCTTCATATTCAGAAGGTCTGTCCTGCTGGGCAGCACTGATATGTCTCGTACAGAATTACGCTCATTTATGGAACAGCTTTCTGGAAAGTATCATGGCGATACCTATCATTTAATTGCCAAGAATTGCAACCATTTCACTGATGAAGTCTGTTTGCGGCTAACTGGAAAACCTATCCCTGGATGGGTAAACCGGCTGGCACGAGTAGGTTCCTTCTGTAATTGTCTTCTGCCAGAAAACATTCAATTATCAGCAGTCAGACATCTTCCTGATCATCCGCCATATTCTGAAGATGATGATGATGATGGATCAGAGTCAATTGCTTCATCTGGAACAGGAAGTGATGAGGATTCAAATCATCACCTGCTGAATGCACCAATCGGGGATGTAGCTTTCGTGAAGGAAACACCAGTAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

227

Amino Acids

25.46

Weight (kDa)

5.73

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 33 - 167 2.1e-52 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 633
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 90
AciI CCGC 3 cut(s) 4, 418, 539
AclWI GGATC 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 2 cut(s) 101, 313
AfiI CCNNNNNNNGG 3 cut(s) 227, 440, 445
AgsI TTSAA 3 cut(s) 19, 506, 615
AjnI CCWGG 2 cut(s) 259, 439
AluBI AGCT 5 cut(s) 33, 39, 45, 340, 653
AluI AGCT 5 cut(s) 33, 39, 45, 340, 653
Alw21I GWGCWC 2 cut(s) 35, 41
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 3 cut(s) 22, 28, 34
ApeKI GCWGC 2 cut(s) 64, 294
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 112, 614
AvaI CYCGRG 3 cut(s) 22, 28, 34
BanII GRGCYC 4 cut(s) 29, 35, 41, 211
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 2 cut(s) 154, 479
Bbv12I GWGCWC 2 cut(s) 35, 41
BbvI GCAGC 2 cut(s) 76, 306
BccI CCATC 2 cut(s) 438, 560
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 2 cut(s) 261, 441
BciVI GTATCC 1 cut(s) 228
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 3 cut(s) 42, 48, 222
BfuAI ACCTGC 1 cut(s) 633
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 3 cut(s) 65, 295, 419
BlsI GCNGC 3 cut(s) 66, 296, 420
Bme1390I CCNGG 2 cut(s) 261, 441
BmeT110I CYCGRG 3 cut(s) 22, 28, 34
BmiI GGNNCC 2 cut(s) 208, 472
BmrFI CCNGG 2 cut(s) 261, 441
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 154, 479
BsaBI GATNNNNATC 2 cut(s) 366, 615
BsaJI CCNNGG 2 cut(s) 259, 439
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 440, 445
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 3 cut(s) 149, 430, 671
Bse8I GATNNNNATC 2 cut(s) 366, 615
BseBI CCWGG 2 cut(s) 261, 441
BseDI CCNNGG 2 cut(s) 259, 439
BseGI GGATG 3 cut(s) 449, 535, 652
BseJI GATNNNNATC 2 cut(s) 366, 615
BseLI CCNNNNNNNGG 3 cut(s) 227, 440, 445
BseNI ACTGG 3 cut(s) 149, 430, 671
BseXI GCAGC 2 cut(s) 76, 306
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 35, 41
BsiHKCI CYCGRG 3 cut(s) 22, 28, 34
BsiSI CCGG 1 cut(s) 454
BslI CCNNNNNNNGG 3 cut(s) 227, 440, 445
BsmAI GTCTC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 637
BsoBI CYCGRG 3 cut(s) 22, 28, 34
Bsp1286I GDGCHC 4 cut(s) 29, 35, 41, 211
Bsp143I GATC 4 cut(s) 73, 115, 532, 569
BspACI CCGC 3 cut(s) 4, 418, 539
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 208, 472
BspMI ACCTGC 1 cut(s) 633
BspPI GGATC 1 cut(s) 577
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 3 cut(s) 149, 430, 671
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 259, 439
BssMI GATC 4 cut(s) 73, 115, 532, 569
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 261, 441
BstC8I GCNNGC 1 cut(s) 459
BstF5I GGATG 3 cut(s) 449, 535, 652
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 4 cut(s) 76, 118, 535, 572
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 4 cut(s) 73, 115, 532, 569
BstNI CCWGG 2 cut(s) 261, 441
BstSCI CCNGG 2 cut(s) 259, 439
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 76, 306
BstV2I GAAGAC 2 cut(s) 154, 479
BsuI GTATCC 1 cut(s) 228
BtsCI GGATG 3 cut(s) 449, 535, 652
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 232, 297, 399
BveI ACCTGC 1 cut(s) 633
Cac8I GCNNGC 1 cut(s) 459
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 453
Csp6I GTAC 2 cut(s) 100, 312
CviAII CATG 4 cut(s) 185, 190, 212, 356
CviQI GTAC 2 cut(s) 100, 312
DpnI GATC 4 cut(s) 75, 117, 534, 571
DpnII GATC 4 cut(s) 73, 115, 532, 569
EciI GGCGGA 1 cut(s) 528
Ecl136II GAGCTC 2 cut(s) 33, 39
Eco24I GRGCYC 4 cut(s) 29, 35, 41, 211
Eco53kI GAGCTC 2 cut(s) 33, 39
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 3 cut(s) 22, 28, 34
EcoICRI GAGCTC 2 cut(s) 33, 39
EcoRII CCWGG 2 cut(s) 259, 439
EcoT38I GRGCYC 4 cut(s) 29, 35, 41, 211
FaeI CATG 4 cut(s) 188, 193, 215, 359
FaiI YATR 9 cut(s) 186, 191, 198, 213, 269, 305, 332, 357, 544
FatI CATG 4 cut(s) 184, 189, 211, 355
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 65, 295, 419
FokI GGATG 3 cut(s) 456, 522, 659
FriOI GRGCYC 4 cut(s) 29, 35, 41, 211
Fsp4HI GCNGC 3 cut(s) 65, 295, 419
FspBI CTAG 3 cut(s) 42, 48, 222
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 65, 295, 419
GsaI CCCAGC 1 cut(s) 293
HapII CCGG 1 cut(s) 454
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 188, 193, 215, 359
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 3 cut(s) 85, 575, 611
HpaII CCGG 1 cut(s) 454
HphI GGTGA 2 cut(s) 112, 614
Hpy166II GTNNAC 2 cut(s) 112, 451
Hpy188I TCNGA 6 cut(s) 78, 152, 275, 521, 550, 574
Hpy188III TCNNGA 4 cut(s) 345, 530, 591, 658
Hpy8I GTNNAC 2 cut(s) 112, 451
HpyAV CCTTC 4 cut(s) 52, 270, 484, 655
HpyCH4V TGCA 3 cut(s) 184, 390, 635
Hsp92II CATG 4 cut(s) 188, 193, 215, 359
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 4 cut(s) 73, 115, 532, 569
LmnI GCTCC 2 cut(s) 61, 206
Lsp1109I GCAGC 2 cut(s) 76, 306
LweI GCATC 1 cut(s) 183
MaeI CTAG 3 cut(s) 42, 48, 222
MalI GATC 4 cut(s) 75, 117, 534, 571
MboI GATC 4 cut(s) 73, 115, 532, 569
MboII GAAGA 4 cut(s) 154, 479, 518, 563
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 4 cut(s) 29, 35, 41, 211
MluCI AATT 6 cut(s) 317, 375, 385, 481, 506, 579
MlyI GAGTC 2 cut(s) 79, 584
MnlI CCTC 3 cut(s) 113, 232, 601
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 2 cut(s) 179, 302
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 2 cut(s) 261, 441
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 2 cut(s) 261, 441
MvnI CGCG 1 cut(s) 90
NdeII GATC 4 cut(s) 73, 115, 532, 569
NlaIII CATG 4 cut(s) 188, 193, 215, 359
NlaIV GGNNCC 2 cut(s) 208, 472
PaeR7I CTCGAG 2 cut(s) 22, 34
PaqCI CACCTGC 1 cut(s) 633
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 3 cut(s) 66, 296, 420
PleI GAGTC 2 cut(s) 79, 583
PpsI GAGTC 2 cut(s) 79, 583
Psp124BI GAGCTC 2 cut(s) 35, 41
Psp6I CCWGG 2 cut(s) 259, 439
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 259, 439
PspN4I GGNNCC 2 cut(s) 208, 472
PspXI VCTCGAGB 2 cut(s) 22, 34
RsaI GTAC 2 cut(s) 101, 313
RsaNI GTAC 2 cut(s) 100, 312
RseI CAYNNNNRTG 2 cut(s) 179, 302
SacI GAGCTC 2 cut(s) 35, 41
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 3 cut(s) 65, 295, 419
Sau3AI GATC 4 cut(s) 73, 115, 532, 569
SchI GAGTC 2 cut(s) 79, 584
ScrFI CCNGG 2 cut(s) 261, 441
SduI GDGCHC 4 cut(s) 29, 35, 41, 211
SfaNI GCATC 1 cut(s) 183
Sfr274I CTCGAG 2 cut(s) 22, 34
SlaI CTCGAG 2 cut(s) 22, 34
SmiMI CAYNNNNRTG 2 cut(s) 179, 302
SmlI CTYRAG 2 cut(s) 22, 34
SmoI CTYRAG 2 cut(s) 22, 34
Sse9I AATT 6 cut(s) 317, 375, 385, 481, 506, 579
SsiI CCGC 3 cut(s) 4, 418, 539
SspMI CTAG 3 cut(s) 42, 48, 222
SstI GAGCTC 2 cut(s) 35, 41
StyD4I CCNGG 2 cut(s) 259, 439
TaqI TCGA 4 cut(s) 23, 35, 177, 243
TasI AATT 6 cut(s) 317, 375, 385, 481, 506, 579
TauI GCSGC 1 cut(s) 421
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 3 cut(s) 232, 304, 406
TseI GCWGC 2 cut(s) 64, 294
TspDTI ATGAA 3 cut(s) 256, 420, 576
TspRI CASTG 3 cut(s) 232, 304, 406
XhoI CTCGAG 2 cut(s) 22, 34
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 3 cut(s) 42, 48, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.