RchiOBHm_Chr7g0215441

MA3 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016458
Physical Location & Seq
Forward (+)
33062026 .. 33063085
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGCAGACTGCAGTGGAAAATAACATTTTTCCTCCATACAACCCAAGTTTGGGTATCTGGGGTGGTAGGACGCAGAATACTCTTCAAGTGTTGGCGAAACAAATCGATTCTCTGTTGACTAAATATAAAGAAAGTAGAGATGCTCTCCTAACCTGTAAGGACATAAGGAAGGTGGTACCACCTTTGTTTGAACATCACTTTGTTGCCTCTACTTTAATTGCTTGCATGAAGAATTGGGGAGAAGCACCATGGGTAATATATCTATTAAAGGAGGCAGCTGGGGTAGGCGTGATTAGTTCATCTCAGATGGTGAAGGGCTTTATTCGAGTTGAAGAGAGGTTTGCTGTCCTTTGTTTGCATGATTCATCAGCAGCAAATATGTTCCAGTCGCTGGTCTTCAAGGCAGTTTCTGATGGTTGGCTGGATAATTCCCTTATAGAATCGTTTGGTAAATATTTTGCGAACTTCCCCAGAGATGGCATGGGAATTGGCTCTCACGTATTGTTGTCTGATGACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

173

Amino Acids

19.23

Weight (kDa)

6.41

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 32 - 142 5.1e-08 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 391
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 4 cut(s) 49, 50, 391, 476
AgsI TTSAA 4 cut(s) 86, 191, 332, 400
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AlwNI CAGNNNCTG 2 cut(s) 391, 410
ApeKI GCWGC 2 cut(s) 275, 371
Asp718I GGTACC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 322
BanI GGYRCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 388
BbvI GCAGC 2 cut(s) 287, 383
BccI CCATC 3 cut(s) 301, 407, 470
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 276, 372
BlsI GCNGC 2 cut(s) 277, 373
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 129, 161
Bsa29I ATCGAT 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 50, 391, 476
Bse1I ACTGG 1 cut(s) 385
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 248
BseLI CCNNNNNNNGG 4 cut(s) 49, 50, 391, 476
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 385
BseXI GCAGC 2 cut(s) 287, 383
BseYI CCCAGC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 105
BslI CCNNNNNNNGG 4 cut(s) 49, 50, 391, 476
Bsp19I CCATGG 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 175
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 248
Bst6I CTCTTC 2 cut(s) 87, 327
BstBAI YACGTR 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 287, 383
BstV2I GAAGAC 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 105
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 2 cut(s) 391, 410
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 176
CviAII CATG 4 cut(s) 226, 249, 359, 481
CviJI RGCY 4 cut(s) 278, 318, 421, 492
CviKI_1 RGCY 4 cut(s) 278, 318, 421, 492
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 87, 327
EarI CTCTTC 2 cut(s) 87, 327
Eco130I CCWWGG 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 4 cut(s) 229, 252, 362, 484
FatI CATG 4 cut(s) 225, 248, 358, 480
Fnu4HI GCNGC 2 cut(s) 276, 372
Fsp4HI GCNGC 2 cut(s) 276, 372
GluI GCNGC 2 cut(s) 276, 372
GsaI CCCAGC 1 cut(s) 282
HgaI GACGC 1 cut(s) 79
Hin1II CATG 4 cut(s) 229, 252, 362, 484
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 3 cut(s) 107, 362, 440
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 3 cut(s) 306, 412, 511
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 163, 307
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 4 cut(s) 4, 11, 225, 358
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 4 cut(s) 229, 252, 362, 484
KpnI GGTACC 1 cut(s) 179
LpnPI CCDG 7 cut(s) 43, 166, 264, 377, 398, 407, 484
Lsp1109I GCAGC 2 cut(s) 287, 383
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 498
MboII GAAGA 4 cut(s) 74, 241, 344, 388
MluCI AATT 4 cut(s) 216, 232, 427, 486
MnlI CCTC 4 cut(s) 42, 217, 265, 330
MseI TTAA 2 cut(s) 215, 266
MspA1I CMGCKG 1 cut(s) 278
NcoI CCATGG 1 cut(s) 248
NlaIII CATG 4 cut(s) 229, 252, 362, 484
NlaIV GGNNCC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 107, 362, 440
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 2 cut(s) 277, 373
Ppu21I YACGTR 1 cut(s) 499
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 177
PstI CTGCAG 1 cut(s) 13
PstNI CAGNNNCTG 2 cut(s) 391, 410
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 215, 266
SatI GCNGC 2 cut(s) 276, 372
SetI ASST 6 cut(s) 155, 174, 184, 280, 341, 501
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 9
Sse9I AATT 4 cut(s) 216, 232, 427, 486
SspI AATATT 1 cut(s) 455
StyI CCWWGG 1 cut(s) 248
TaiI ACGT 1 cut(s) 501
TaqI TCGA 2 cut(s) 105, 325
TasI AATT 4 cut(s) 216, 232, 427, 486
TfiI GAWTC 3 cut(s) 107, 362, 440
Tru1I TTAA 2 cut(s) 215, 266
Tru9I TTAA 2 cut(s) 215, 266
TscAI CASTG 1 cut(s) 18
TseI GCWGC 2 cut(s) 275, 371
TspDTI ATGAA 3 cut(s) 242, 288, 354
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.