Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016458

Physical Location & Seq

Genomic Coordinates Forward (+)

26372584 .. 26374085

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG281800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTGAAGGGCTTTATTCGAGTTGAAGAGAGGCTTGCTGTCCTTGTTTTGCATTATTCATCAGCAGAAAATATGTTCCAGTCGCTGGTCTCCAAGGCAGTTTCTGATGGTTGGCTGGATAATTCCCTCTTAGAATCCTTTGGTAAAGATTTTGCGAACTTCCCTAGAGATGGCATGGGGATTGGCTCTCCCGTAGTGATGACTGATGACGGCATTGGCAACACAAACATGTTGACCATTTTGGAGGATGCTCAGTCGAATCTTAATAAGCACGACTATGGTCTAGCTTGGGACATGTTTATGGAAGGAAATCGAAAGGATCCCCATGATATCCACTTTTCAGATGGTGCCCAGAGTTGCGCATGGAAGATATTAGGAGCCAGTCCTCTGCGTTGGCAGTGGGTACTTTGGCAGATTTTTAATTCTGAGAAGTTGGTACATATCCTAGAATGGGTTGCAATTCTTGCAGACTGGAAGAGCTTTAGGGGTTTGACTCTATTCTTGTCGGTGTTTCTGGTAGTTTGTCATGTGTGCAGCATCCGTAAACAGCATGGACGCGTGAGGATTGGATTTACATTTGGAAAAATCTTACTAGCATTTCTTTCGGGTATTGTAGCTGTTATTGGGTTGAGGGCTGACCCCGAGCGCACCACCCACCTTGAACATCTTAGTCACTTTGTTCTACTTCCAGTGCACTTTCTGTTTCTTATCTTTGCTTATTGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

242

Amino Acids

27.43

Weight (kDa)

6.4

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016458)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0215421 RchiOBHm_Chr7g0215441
rosa_multiflora	Rmu_co8490693.1_g000001
rosa_rugosa	Rorug07G0153500 Rorug07G0153600 Rorug07G0153700 Rorug07G0153800
rosa_samantha	Rh7AG289900 Rh7AG290000 Rh7BG281800 Rh7CG309700 Rh7CG309800 Rh7DG293500 Rh7DG293600
rosa_wichuraiana	Rw7G024770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccII	CGCG	1 cut(s)	558
AclWI	GGATC	2 cut(s)	314, 327
AfaI	GTAC	2 cut(s)	405, 438
AfiI	CCNNNNNNNGG	3 cut(s)	85, 170, 451
AflIII	ACRYGT	3 cut(s)	228, 294, 556
AgsI	TTSAA	2 cut(s)	26, 662
AluBI	AGCT	3 cut(s)	287, 480, 617
AluI	AGCT	3 cut(s)	287, 480, 617
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	692
AlwI	GGATC	2 cut(s)	314, 327
AlwNI	CAGNNNCTG	2 cut(s)	85, 104
Ama87I	CYCGRG	1 cut(s)	641
ApaLI	GTGCAC	1 cut(s)	692
ApeKI	GCWGC	2 cut(s)	534, 723
AspLEI	GCGC	2 cut(s)	362, 648
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	641
BaeGI	GKGCMC	2 cut(s)	352, 696
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	2 cut(s)	546, 710
BccI	CCATC	3 cut(s)	101, 164, 338
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	5 cut(s)	165, 284, 446, 593, 727
BisI	GCNGC	2 cut(s)	535, 724
BlsI	GCNGC	2 cut(s)	536, 725
BmeT110I	CYCGRG	1 cut(s)	641
BmiI	GGNNCC	3 cut(s)	321, 349, 379
BmsI	GCATC	2 cut(s)	238, 546
BoxI	GACNNNNGTC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 170, 451
Bse1I	ACTGG	4 cut(s)	79, 381, 476, 689
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	253, 537
BseLI	CCNNNNNNNGG	3 cut(s)	85, 170, 451
BseMII	CTCAG	2 cut(s)	266, 417
BseNI	ACTGG	4 cut(s)	79, 381, 476, 689
BseSI	GKGCMC	2 cut(s)	352, 696
BseXI	GCAGC	2 cut(s)	546, 710
BsgI	GTGCAG	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	558
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	696
BsiHKCI	CYCGRG	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	85, 170, 451
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	2 cut(s)	352, 696
Bsp143I	GATC	1 cut(s)	319
BspCNI	CTCAG	2 cut(s)	265, 418
BspFNI	CGCG	1 cut(s)	558
BspLI	GGNNCC	3 cut(s)	321, 349, 379
BspPI	GGATC	2 cut(s)	314, 327
BspQI	GCTCTTC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	94
BsrI	ACTGG	4 cut(s)	79, 381, 476, 689
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	21, 470
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	4 cut(s)	130, 252, 426, 668
BstF5I	GGATG	2 cut(s)	253, 537
BstFNI	CGCG	1 cut(s)	558
BstHHI	GCGC	2 cut(s)	362, 648
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNSI	RCATGY	2 cut(s)	232, 298
BstPAI	GACNNNNGTC	1 cut(s)	279
BstSLI	GKGCMC	2 cut(s)	352, 696
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	546, 710
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	253, 537
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	404, 696
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	2 cut(s)	85, 104
CfoI	GCGC	2 cut(s)	362, 648
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	404, 437
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	7 cut(s)	175, 229, 295, 326, 363, 527, 551
CviJI	RGCY	9 cut(s)	12, 34, 115, 186, 287, 380, 480, 617, 635
CviKI_1	RGCY	9 cut(s)	12, 34, 115, 186, 287, 380, 480, 617, 635
CviQI	GTAC	2 cut(s)	404, 437
DdeI	CTNAG	4 cut(s)	130, 252, 426, 668
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	21, 470
EarI	CTCTTC	2 cut(s)	21, 470
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	641
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	7 cut(s)	178, 232, 298, 329, 366, 530, 554
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	7 cut(s)	174, 228, 294, 325, 362, 526, 550
Fnu4HI	GCNGC	2 cut(s)	535, 724
FokI	GGATG	2 cut(s)	260, 524
Fsp4HI	GCNGC	2 cut(s)	535, 724
FspBI	CTAG	5 cut(s)	165, 284, 446, 593, 727
FspI	TGCGCA	1 cut(s)	361
GlaI	GCGC	2 cut(s)	361, 647
GluI	GCNGC	2 cut(s)	535, 724
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	2 cut(s)	362, 648
Hin1II	CATG	7 cut(s)	178, 232, 298, 329, 366, 530, 554
Hin6I	GCGC	2 cut(s)	360, 646
HinP1I	GCGC	2 cut(s)	360, 646
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	3 cut(s)	134, 259, 493
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	234, 545, 694
Hpy188I	TCNGA	3 cut(s)	106, 343, 427
Hpy8I	GTNNAC	3 cut(s)	234, 545, 694
HpyAV	CCTTC	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	52, 458, 467, 534, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	4 cut(s)	130, 252, 426, 668
Hsp92II	CATG	7 cut(s)	178, 232, 298, 329, 366, 530, 554
HspAI	GCGC	2 cut(s)	360, 646
Kzo9I	GATC	1 cut(s)	319
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	8 cut(s)	71, 92, 101, 365, 394, 457, 500, 702
Lsp1109I	GCAGC	2 cut(s)	546, 710
LweI	GCATC	2 cut(s)	238, 546
MaeI	CTAG	5 cut(s)	165, 284, 446, 593, 727
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	3 cut(s)	38, 379, 487
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	352, 696
MluCI	AATT	3 cut(s)	121, 421, 459
MluI	ACGCGT	1 cut(s)	556
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	6 cut(s)	24, 137, 238, 396, 555, 624
MseI	TTAA	2 cut(s)	264, 420
MslI	CAYNNNNRTG	3 cut(s)	227, 276, 299
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	7 cut(s)	178, 232, 298, 329, 366, 530, 554
NlaIV	GGNNCC	3 cut(s)	321, 349, 379
NmuCI	GTSAC	1 cut(s)	671
NsbI	TGCGCA	1 cut(s)	361
NspI	RCATGY	2 cut(s)	232, 298
PciI	ACATGT	2 cut(s)	228, 294
PciSI	GCTCTTC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	134, 259
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	536, 725
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PscI	ACATGT	2 cut(s)	228, 294
PshAI	GACNNNNGTC	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	321, 349, 379
PstNI	CAGNNNCTG	2 cut(s)	85, 104
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	405, 438
RsaNI	GTAC	2 cut(s)	404, 437
RseI	CAYNNNNRTG	3 cut(s)	227, 276, 299
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	264, 420
SatI	GCNGC	2 cut(s)	535, 724
Sau3AI	GATC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	487
SduI	GDGCHC	2 cut(s)	352, 696
SetI	ASST	4 cut(s)	289, 482, 619, 660
SfaNI	GCATC	2 cut(s)	238, 546
SmiMI	CAYNNNNRTG	3 cut(s)	227, 276, 299
Sse9I	AATT	3 cut(s)	121, 421, 459
SspMI	CTAG	5 cut(s)	165, 284, 446, 593, 727
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	3 cut(s)	19, 257, 313
TasI	AATT	3 cut(s)	121, 421, 459
TfiI	GAWTC	2 cut(s)	134, 259
Tru1I	TTAA	2 cut(s)	264, 420
Tru9I	TTAA	2 cut(s)	264, 420
TscAI	CASTG	2 cut(s)	404, 696
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	2 cut(s)	534, 723
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	2 cut(s)	404, 696
Van91I	CCANNNNNTGG	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	692
XceI	RCATGY	2 cut(s)	232, 298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	5 cut(s)	165, 284, 446, 593, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.