Rmu_co8490693.1_g000001

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8490693.1
OG0016458
Physical Location & Seq
Reverse (-)
1 .. 2491
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8490693.1_g000001.1.cds

Sequence Viewer

Length: 954 bp
atgggcccaaagctgtttgatgctggtgctgaatcccagatatatcgtaatgtcttcaacaatcatcatgagaagcttgtccggtcaactggaggggatccctcggatgaatacaacaaagatattgcctacattgttagggagtacttccgcactggtaatattgtacaggcagcatgggaggtcagaggaatgccgaatcagtatcatccttacttcgttcagggactcgtttccatggcaatgtccagcgatgatgagaacaaggaggtttcttcatctttgctttcagctttgtatgctgatgtcattagccctgtgcatattgaagatggattcaacttactactgcgctatgctgatgtactggatgcagtagacattctccctcttttccttggtcgtgcagtggtttattctatccttccttcaggcttcatcaccagggcaaaggaagcactcccagaatcttccaaggggtttcagatcatgcagaatgcagtggaaaataacatttttcctccatacaccccaagttttgtgggtatatggggtggtaggacgcagaatactcttcaagtgttggagaaacaaatcgattctctgttaacggaatataaagaaagtagagatgatctcctaacctgtaaggacataaggaaggtgatacctcctttgtttgaacatcaatttgttgcctctgctttaattgcttgcatggagaattggggagaagcaccatgggtaatatatctattaaaggaagcagctggggtaggcgtgattagttcatctcagatggtgaagggctttattcgagttgaagagaggcttgctgtactttgtttgcatgattcatcggtagcaaatatgttccagtcgttgatctccaaggccatttctgatggttggctggataattcccttgtagaatcctttggtaaatattttgcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

318

Amino Acids

35.57

Weight (kDa)

4.99

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 378
AciI CCGC 1 cut(s) 151
AclWI GGATC 2 cut(s) 92, 105
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 4 cut(s) 146, 168, 366, 840
AgsI TTSAA 6 cut(s) 58, 329, 340, 578, 683, 824
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 4 cut(s) 13, 76, 293, 770
AluI AGCT 4 cut(s) 13, 76, 293, 770
AlwI GGATC 2 cut(s) 92, 105
AoxI GGCC 2 cut(s) 4, 894
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 173, 767
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 4, 5
AsuHPI GGTGA 3 cut(s) 433, 676, 814
BaeGI GKGCMC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 185, 779
BccI CCATC 3 cut(s) 326, 793, 899
BciT130I CCWGG 1 cut(s) 445
BisI GCNGC 2 cut(s) 174, 768
BlsI GCNGC 2 cut(s) 175, 769
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 2 cut(s) 6, 99
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 2 cut(s) 10, 361
BpiI GAAGAC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 621, 653
BpmI CTGGAG 1 cut(s) 111
Bsa29I ATCGAT 1 cut(s) 597
BsaJI CCNNGG 7 cut(s) 102, 237, 397, 444, 474, 740, 891
BsaWI WCCGGW 1 cut(s) 81
Bse1I ACTGG 4 cut(s) 94, 160, 372, 877
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 445
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 7 cut(s) 102, 237, 397, 444, 474, 740, 891
BseGI GGATG 3 cut(s) 112, 208, 376
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 4 cut(s) 94, 160, 372, 877
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 185, 779
BseYI CCCAGC 1 cut(s) 770
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 2 cut(s) 6, 896
BshVI ATCGAT 1 cut(s) 597
BsiSI CCGG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 2 cut(s) 198, 502
BsnI GGCC 2 cut(s) 6, 896
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 4 cut(s) 97, 486, 634, 885
Bsp19I CCATGG 2 cut(s) 237, 740
BspACI CCGC 1 cut(s) 151
BspANI GGCC 2 cut(s) 6, 896
BspCNI CTCAG 1 cut(s) 808
BspDI ATCGAT 1 cut(s) 597
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 6, 99
BspPI GGATC 2 cut(s) 92, 105
BsrDI GCAATG 1 cut(s) 249
BsrGI TGTACA 1 cut(s) 166
BsrI ACTGG 4 cut(s) 94, 160, 372, 877
BssECI CCNNGG 7 cut(s) 102, 237, 397, 444, 474, 740, 891
BssMI GATC 4 cut(s) 97, 486, 634, 885
BssT1I CCWWGG 5 cut(s) 237, 397, 474, 740, 891
Bst2UI CCWGG 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 579, 819
BstAUI TGTACA 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 715, 834
BstDEI CTNAG 1 cut(s) 795
BstDSI CCRYGG 2 cut(s) 237, 740
BstF5I GGATG 3 cut(s) 112, 208, 376
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 4 cut(s) 100, 489, 637, 888
BstMBI GATC 4 cut(s) 97, 486, 634, 885
BstMWI GCNNNNNNNGC 3 cut(s) 299, 455, 710
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 443
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 185, 779
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 597
BsuRI GGCC 2 cut(s) 6, 896
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 2 cut(s) 237, 740
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 112, 208, 376
BtsI GCAGTG 2 cut(s) 414, 507
BtsIMutI CAGTG 3 cut(s) 153, 414, 507
Cac8I GCNNGC 2 cut(s) 715, 834
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 4, 5
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 1 cut(s) 571
Csp6I GTAC 4 cut(s) 145, 167, 365, 839
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 7 cut(s) 68, 177, 238, 490, 718, 741, 851
CviQI GTAC 4 cut(s) 145, 167, 365, 839
DdeI CTNAG 1 cut(s) 795
DpnI GATC 4 cut(s) 99, 488, 636, 887
DpnII GATC 4 cut(s) 97, 486, 634, 885
Eam1104I CTCTTC 2 cut(s) 579, 819
EarI CTCTTC 2 cut(s) 579, 819
Eco130I CCWWGG 5 cut(s) 237, 397, 474, 740, 891
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 5 cut(s) 237, 397, 474, 740, 891
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 5 cut(s) 237, 397, 474, 740, 891
FaeI CATG 7 cut(s) 71, 180, 241, 493, 721, 744, 854
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 1 cut(s) 240
FatI CATG 7 cut(s) 67, 176, 237, 489, 717, 740, 850
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 174, 768
FokI GGATG 3 cut(s) 119, 195, 383
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 174, 768
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 174, 768
GsaI CCCAGC 1 cut(s) 774
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 6, 896
HapII CCGG 1 cut(s) 82
HgaI GACGC 1 cut(s) 571
HhaI GCGC 1 cut(s) 354
Hin1II CATG 7 cut(s) 71, 180, 241, 493, 721, 744, 854
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 87, 609
HindII GTYRAC 2 cut(s) 87, 609
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 8 cut(s) 32, 199, 228, 336, 467, 599, 854, 932
HpaI GTTAAC 1 cut(s) 609
HpaII CCGG 1 cut(s) 82
HphI GGTGA 3 cut(s) 433, 676, 814
Hpy166II GTNNAC 3 cut(s) 87, 379, 609
Hpy188I TCNGA 5 cut(s) 106, 188, 486, 798, 904
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 3 cut(s) 87, 379, 609
HpyAV CCTTC 4 cut(s) 434, 438, 655, 799
HpyCH4V TGCA 7 cut(s) 322, 374, 407, 493, 500, 717, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 455, 710
HpyF3I CTNAG 1 cut(s) 795
Hsp92II CATG 7 cut(s) 71, 180, 241, 493, 721, 744, 854
HspAI GCGC 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 609
Kzo9I GATC 4 cut(s) 97, 486, 634, 885
Lsp1109I GCAGC 2 cut(s) 185, 779
LweI GCATC 2 cut(s) 10, 361
MalI GATC 4 cut(s) 99, 488, 636, 887
MboI GATC 4 cut(s) 97, 486, 634, 885
MboII GAAGA 6 cut(s) 46, 267, 341, 462, 566, 836
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 689, 708, 724, 919
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 564
MseI TTAA 3 cut(s) 608, 707, 758
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 445
Mva1269I GAATGC 2 cut(s) 198, 502
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 3 cut(s) 299, 455, 710
NcoI CCATGG 2 cut(s) 237, 740
NdeII GATC 4 cut(s) 97, 486, 634, 885
NlaIII CATG 7 cut(s) 71, 180, 241, 493, 721, 744, 854
NlaIV GGNNCC 2 cut(s) 6, 99
PagI TCATGA 1 cut(s) 67
PctI GAATGC 2 cut(s) 198, 502
PfeI GAWTC 7 cut(s) 32, 199, 336, 467, 599, 854, 932
PkrI GCNGC 2 cut(s) 175, 769
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 770
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 6, 99
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
PsuI RGATCY 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 4 cut(s) 146, 168, 366, 840
RsaNI GTAC 4 cut(s) 145, 167, 365, 839
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 3 cut(s) 608, 707, 758
SatI GCNGC 2 cut(s) 174, 768
Sau3AI GATC 4 cut(s) 97, 486, 634, 885
Sau96I GGNCC 2 cut(s) 4, 5
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 15, 78, 186, 273, 295, 647, 666, 673, 772
SfaNI GCATC 2 cut(s) 10, 361
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 4 cut(s) 689, 708, 724, 919
SsiI CCGC 1 cut(s) 151
SspI AATATT 2 cut(s) 163, 947
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 5 cut(s) 237, 397, 474, 740, 891
TaqI TCGA 2 cut(s) 597, 817
TasI AATT 4 cut(s) 689, 708, 724, 919
TatI WGTACW 4 cut(s) 144, 166, 364, 838
TfiI GAWTC 7 cut(s) 32, 199, 336, 467, 599, 854, 932
Tru1I TTAA 3 cut(s) 608, 707, 758
Tru9I TTAA 3 cut(s) 608, 707, 758
TscAI CASTG 3 cut(s) 160, 414, 507
TseI GCWGC 2 cut(s) 173, 767
TspDTI ATGAA 5 cut(s) 123, 267, 427, 780, 846
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 3 cut(s) 160, 414, 507
XmiI GTMKAC 1 cut(s) 378
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.