Rh7DG293500

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016458
Physical Location & Seq
Forward (+)
33167667 .. 33169833
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG293500.1

Sequence Viewer

Length: 555 bp
ATGGCATCAAGTAGAGGAGAGCAGGGGGGAACCGGGCGAAATGTGGAGATCTCGTCATCAACCCCCCCATCCCCTAAGTCCGTTCTCTCTGCCAATGCCACACCACCAGCTGGGGTAGCAGTGAGGAATGTGGGTCAGACACACTCACGGAAGCCTGCAAAGAGGGGAGGTGGTGGCATGGGCCCAAAGCTGTTTGATGCTGGTGTTGAATCCCAGATATATCGTAATGTCTTCAACAATCATCATGAGAAGCTTGTCCGGTCAACTGGAGGGGATCCCTCGGATGAATACAACAAAGATATTGCCTACATTGTTAGGGAGTACTTCCGCACTGGTAATATTGTACAGGCAGCATGGGAGGTCAGAGGAATGCCGAATCAGTATCATCCTTACTTCGTTCAGGGACTCGTTTCCATGGCAATGTCCAGCGATATGAGAACAAGGAGATTTCTTCATCTTTGCTTTCAGCTTTGTATGCTGATGTCATTAGCCCTGTGCATATTGAAGATGGATTCAACTTACTACTGCGCTATGCTGATGTACTGGATGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

184

Amino Acids

20.47

Weight (kDa)

9.39

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AciI CCGC 1 cut(s) 328
AclWI GGATC 2 cut(s) 269, 282
AfaI GTAC 3 cut(s) 323, 345, 542
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 4 cut(s) 209, 235, 505, 516
AluBI AGCT 4 cut(s) 110, 190, 253, 469
AluI AGCT 4 cut(s) 110, 190, 253, 469
AlwI GGATC 2 cut(s) 269, 282
AoxI GGCC 1 cut(s) 181
ApaI GGGCCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 2 cut(s) 181, 182
AsuC2I CCSGG 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 185
BamHI GGATCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 362
BccI CCATC 2 cut(s) 76, 502
BcnI CCSGG 1 cut(s) 34
BglII AGATCT 1 cut(s) 48
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 181, 182
BmiI GGNNCC 3 cut(s) 31, 183, 276
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 3 cut(s) 14, 187, 537
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 279, 414
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 3 cut(s) 271, 337, 548
Bse3DI GCAATG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 279, 414
BseGI GGATG 4 cut(s) 68, 289, 385, 552
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 426
BseNI ACTGG 3 cut(s) 271, 337, 548
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 1 cut(s) 362
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 33, 259
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 417
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 1 cut(s) 183
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 185
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 2 cut(s) 48, 274
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 183
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 3 cut(s) 31, 183, 276
BspPI GGATC 2 cut(s) 269, 282
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 3 cut(s) 271, 337, 548
BssECI CCNNGG 2 cut(s) 279, 414
BssMI GATC 2 cut(s) 48, 274
BssT1I CCWWGG 1 cut(s) 414
BstAUI TGTACA 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 4 cut(s) 68, 289, 385, 552
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 2 cut(s) 51, 277
BstMBI GATC 2 cut(s) 48, 274
BstMWI GCNNNNNNNGC 2 cut(s) 116, 475
BstSCI CCNGG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 2 cut(s) 48, 274
BstYI RGATCY 2 cut(s) 48, 274
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 4 cut(s) 68, 289, 385, 552
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 330
Cac8I GCNNGC 1 cut(s) 156
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 530
Cfr13I GGNCC 2 cut(s) 181, 182
Csp6I GTAC 3 cut(s) 322, 344, 541
CviAII CATG 4 cut(s) 178, 245, 354, 415
CviJI RGCY 7 cut(s) 110, 154, 183, 190, 253, 469, 491
CviKI_1 RGCY 7 cut(s) 110, 154, 183, 190, 253, 469, 491
CviQI GTAC 3 cut(s) 322, 344, 541
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 50, 276
DpnII GATC 2 cut(s) 48, 274
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 4 cut(s) 181, 248, 357, 418
FaiI YATR 9 cut(s) 179, 220, 246, 355, 416, 434, 476, 500, 533
FaqI GGGAC 1 cut(s) 417
FatI CATG 4 cut(s) 177, 244, 353, 414
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 3 cut(s) 55, 296, 372
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 351
GlaI GCGC 1 cut(s) 529
GluI GCNGC 1 cut(s) 351
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 33, 259
HhaI GCGC 1 cut(s) 530
Hin1II CATG 4 cut(s) 181, 248, 357, 418
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 4 cut(s) 209, 376, 405, 512
HpaII CCGG 2 cut(s) 33, 259
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 3 cut(s) 138, 283, 365
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 158, 498, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 475
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 4 cut(s) 181, 248, 357, 418
HspAI GCGC 1 cut(s) 528
Kzo9I GATC 2 cut(s) 48, 274
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 3 cut(s) 14, 187, 537
MalI GATC 2 cut(s) 50, 276
MboI GATC 2 cut(s) 48, 274
MboII GAAGA 3 cut(s) 223, 443, 517
MflI RGATCY 2 cut(s) 48, 274
MhlI GDGCHC 1 cut(s) 185
MlyI GAGTC 1 cut(s) 399
MnlI CCTC 8 cut(s) 8, 117, 156, 161, 263, 289, 352, 359
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 2 cut(s) 33, 259
MspR9I CCNGG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 116, 475
NciI CCSGG 1 cut(s) 34
NcoI CCATGG 1 cut(s) 414
NdeII GATC 2 cut(s) 48, 274
NlaIII CATG 4 cut(s) 181, 248, 357, 418
NlaIV GGNNCC 3 cut(s) 31, 183, 276
PagI TCATGA 1 cut(s) 244
PctI GAATGC 1 cut(s) 375
PfeI GAWTC 3 cut(s) 209, 376, 512
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PspFI CCCAGC 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 31, 183, 276
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 2 cut(s) 181, 182
PsuI RGATCY 2 cut(s) 48, 274
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 3 cut(s) 323, 345, 542
RsaNI GTAC 3 cut(s) 322, 344, 541
RseI CAYNNNNRTG 1 cut(s) 419
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 48, 274
Sau96I GGNCC 2 cut(s) 181, 182
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 185
SetI ASST 6 cut(s) 112, 172, 192, 255, 363, 471
SfaNI GCATC 3 cut(s) 14, 187, 537
SmiMI CAYNNNNRTG 1 cut(s) 419
SsiI CCGC 1 cut(s) 328
SspI AATATT 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 414
TatI WGTACW 3 cut(s) 321, 343, 540
TfiI GAWTC 3 cut(s) 209, 376, 512
TscAI CASTG 2 cut(s) 126, 337
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 300, 443
TspGWI ACGGA 2 cut(s) 70, 163
TspRI CASTG 2 cut(s) 126, 337
Van91I CCANNNNNTGG 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.