Rorug07G0153700

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016458
Physical Location & Seq
Reverse (-)
12189016 .. 12189903
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0153700.1

Sequence Viewer

Length: 642 bp
ATGGCTGAGAAGCACAATCATACGCAACAAGCACTGGTTCAAGGGCACCCGAGAAATGGTGAAGATCACTCGACCACTTTCCAATTCCAGGATGAGATCAAGCGTGAGAAGAGAATGAAATTGTACAAATATATTGGTATTTTCATTGTGTTTCAGATTATAATTTTGACTGTGTTTGGTCTCATGGTGAAGAAAGTTAAGACCCCTAAGGTGAGATTGGGCGCCATCAACATTCAAAGTCTCAACTCCGTCCCTGCAACACCTTCTTTTGATGCAAGCTTCACCACCCAAATTAGGGTTAAGAACCCGAACTGGGGTCCCTTTAAGTTTGATGCAAGCACTGCAACTTTTTCGTACCAAGGCGTGCCTGTGGGGCAAGTTGTGATTCCGAAGAGCAAGGCTAGAATGCGTTCGACCAAGAAGATTGGTGTCACGGTGAGTTTGAATTCCAAAGCATTGCCAAGCAGTTCTGATCTTGGCAGTGAATTGAAGAGTGGGGTGTTGACGTTGAGTAGCCAAGCCAAGTTGTCTGGAAAGGTGGAAATTATGGCGGTGACCAAGAAAAATAAGTCCGCCCAAATGGACTGCGCTATTGTGTTTGACTTGTCTAGAAAGGCAATTCAAGCTCTGCAGTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

213

Amino Acids

23.52

Weight (kDa)

10.16

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 98 - 196 2.1e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 161
AccB1I GGYRCC 2 cut(s) 45, 221
AciI CCGC 2 cut(s) 551, 573
AcsI RAATTY 1 cut(s) 445
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 125, 356
AfiI CCNNNNNNNGG 6 cut(s) 56, 88, 294, 295, 313, 314
AgsI TTSAA 5 cut(s) 41, 236, 445, 490, 623
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 279, 626
AluI AGCT 2 cut(s) 279, 626
Alw26I GTCTC 2 cut(s) 185, 245
Ama87I CYCGRG 1 cut(s) 49
ApoI RAATTY 1 cut(s) 445
Asp700I GAANNNNTTC 1 cut(s) 409
AspLEI GCGC 2 cut(s) 224, 590
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 6 cut(s) 71, 199, 223, 274, 448, 565
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 1 cut(s) 317
AxyI CCTNAGG 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 48
BanI GGYRCC 2 cut(s) 45, 221
BccI CCATC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 2 cut(s) 185, 245
BfaI CTAG 2 cut(s) 402, 609
BfmI CTRYAG 1 cut(s) 629
BfoI RGCGCY 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 4 cut(s) 47, 223, 318, 319
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 2 cut(s) 262, 322
BmuI ACTGGG 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 6 cut(s) 56, 88, 294, 295, 313, 314
Bse1I ACTGG 2 cut(s) 39, 317
Bse21I CCTNAGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 6 cut(s) 56, 88, 294, 295, 313, 314
BseMI GCAATG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 39, 317
BseSI GKGCMC 1 cut(s) 48
BshNI GGYRCC 2 cut(s) 45, 221
BsiHKCI CYCGRG 1 cut(s) 49
BslFI GGGAC 2 cut(s) 236, 303
BslI CCNNNNNNNGG 6 cut(s) 56, 88, 294, 295, 313, 314
BsmAI GTCTC 2 cut(s) 185, 245
BsmFI GGGAC 2 cut(s) 236, 303
BsmI GAATGC 1 cut(s) 411
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 3 cut(s) 64, 96, 472
BspACI CCGC 2 cut(s) 551, 573
BspLI GGNNCC 4 cut(s) 47, 223, 318, 319
BspMAI CTGCAG 1 cut(s) 633
BspQI GCTCTTC 1 cut(s) 386
BspT107I GGYRCC 2 cut(s) 45, 221
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 455
BsrGI TGTACA 1 cut(s) 123
BsrI ACTGG 2 cut(s) 39, 317
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 3 cut(s) 64, 96, 472
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 172, 436
Bst6I CTCTTC 3 cut(s) 104, 386, 485
BstACI GRCGYC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 277, 337, 365
BstDEI CTNAG 2 cut(s) 6, 207
BstEII GGTNACC 1 cut(s) 553
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 224, 590
BstKTI GATC 3 cut(s) 67, 99, 475
BstMAI GTCTC 2 cut(s) 185, 245
BstMBI GATC 3 cut(s) 64, 96, 472
BstMWI GCNNNNNNNGC 3 cut(s) 341, 373, 623
BstNI CCWGG 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 629
BstSLI GKGCMC 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 3 cut(s) 339, 487, 638
BtsIMutI CAGTG 4 cut(s) 32, 339, 487, 638
Cac8I GCNNGC 3 cut(s) 277, 337, 365
CfoI GCGC 2 cut(s) 224, 590
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 124, 355
CviAII CATG 1 cut(s) 184
CviJI RGCY 6 cut(s) 5, 279, 401, 516, 521, 626
CviKI_1 RGCY 6 cut(s) 5, 279, 401, 516, 521, 626
CviQI GTAC 2 cut(s) 124, 355
DdeI CTNAG 2 cut(s) 6, 207
DinI GGCGCC 1 cut(s) 223
DpnI GATC 3 cut(s) 66, 98, 474
DpnII GATC 3 cut(s) 64, 96, 472
Eam1104I CTCTTC 3 cut(s) 104, 386, 485
EarI CTCTTC 3 cut(s) 104, 386, 485
EciI GGCGGA 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 317
Eco81I CCTNAGG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 49
Eco91I GGTNACC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 317
EcoO65I GGTNACC 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 358
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 187
FaiI YATR 5 cut(s) 21, 132, 161, 185, 548
FaqI GGGAC 2 cut(s) 236, 303
FatI CATG 1 cut(s) 183
FokI GGATG 1 cut(s) 104
FspBI CTAG 2 cut(s) 402, 609
GlaI GCGC 2 cut(s) 223, 589
HaeII RGCGCY 1 cut(s) 225
HhaI GCGC 2 cut(s) 224, 590
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 2 cut(s) 222, 588
HinP1I GCGC 2 cut(s) 222, 588
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 1 cut(s) 385
HphI GGTGA 6 cut(s) 71, 199, 223, 274, 448, 565
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 3 cut(s) 156, 390, 472
Hpy188III TCNNGA 2 cut(s) 531, 609
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 2 cut(s) 172, 436
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 6 cut(s) 257, 275, 335, 344, 631, 636
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 373, 623
HpyF3I CTNAG 2 cut(s) 6, 207
HpySE526I ACGT 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 2 cut(s) 222, 588
KasI GGCGCC 1 cut(s) 221
KflI GGGWCCC 1 cut(s) 317
Kzo9I GATC 3 cut(s) 64, 96, 472
LguI GCTCTTC 1 cut(s) 386
LpnPI CCDG 7 cut(s) 20, 74, 101, 267, 298, 381, 516
LweI GCATC 2 cut(s) 262, 322
MaeI CTAG 2 cut(s) 402, 609
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 2 cut(s) 430, 553
MalI GATC 3 cut(s) 66, 98, 474
MboI GATC 3 cut(s) 64, 96, 472
MboII GAAGA 6 cut(s) 74, 121, 202, 403, 433, 502
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 8 cut(s) 83, 119, 162, 291, 445, 485, 543, 618
Mly113I GGCGCC 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 409
MseI TTAA 3 cut(s) 198, 300, 324
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 341, 373, 623
NarI GGCGCC 1 cut(s) 222
NdeII GATC 3 cut(s) 64, 96, 472
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 4 cut(s) 47, 223, 318, 319
NmuCI GTSAC 2 cut(s) 430, 553
PciSI GCTCTTC 1 cut(s) 386
PctI GAATGC 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 409
PfeI GAWTC 1 cut(s) 385
PfoI TCCNGGA 1 cut(s) 87
PluTI GGCGCC 1 cut(s) 225
PpuMI RGGWCCY 1 cut(s) 317
PsiI TTATAA 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 4 cut(s) 47, 223, 318, 319
PspPI GGNCC 1 cut(s) 317
PspPPI RGGWCCY 1 cut(s) 317
PstI CTGCAG 1 cut(s) 633
RsaI GTAC 2 cut(s) 125, 356
RsaNI GTAC 2 cut(s) 124, 355
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 198, 300, 324
Sau3AI GATC 3 cut(s) 64, 96, 472
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 48
SetI ASST 6 cut(s) 213, 265, 281, 509, 540, 628
SfaNI GCATC 2 cut(s) 262, 322
SfcI CTRYAG 1 cut(s) 629
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 317
Sse9I AATT 8 cut(s) 83, 119, 162, 291, 445, 485, 543, 618
SsiI CCGC 2 cut(s) 551, 573
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 2 cut(s) 402, 609
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 2 cut(s) 172, 436
TaiI ACGT 1 cut(s) 509
TaqI TCGA 2 cut(s) 71, 413
TasI AATT 8 cut(s) 83, 119, 162, 291, 445, 485, 543, 618
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 3 cut(s) 198, 300, 324
Tru9I TTAA 3 cut(s) 198, 300, 324
TscAI CASTG 4 cut(s) 39, 346, 487, 638
TseFI GTSAC 2 cut(s) 430, 553
Tsp45I GTSAC 2 cut(s) 430, 553
TspDTI ATGAA 2 cut(s) 131, 133
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 4 cut(s) 39, 346, 487, 638
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 445
XbaI TCTAGA 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 409
XspI CTAG 2 cut(s) 402, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.