Rh7CG309700

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016458
Physical Location & Seq
Forward (+)
32696312 .. 32698491
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG309700.1

Sequence Viewer

Length: 744 bp
ATGCGACTGAGACAAGCAGACGCAGACGCAAACGCAAACCCTAAGTGTGATTACCGAATGACATCAACTGGGGTAGCAGTGAGGAATGTGGGTCAGACACACTCACGGAAGCCTGCAAAGAGGGGAGGTGGTGGCATGGGCCCAAAGCTGTTTGATGCTGGTGCTGAATCCCAGATATATCGTAATGTCTTCAACAATCATCATGAGAAGCTTGTCCGGTCAACTGGAGGGGATCCCTTGGATGAATACAACAAAGATATTGCCTACATTGTTAGGGAGTACTTCCGCACTGGTAATATTGTACAGGCAGCATGGGAGGTCAGAGGAATGCCGAATCAGTATCATCCTTACTTCGTTCAGGGACTCGTTTCCATGGCAATGTCCAGCGATGATGAGAACAAGGAGATTTCTTCATCTTTGCTTTCAGCTTTGTATGCTGATGTCATTAGCCCTGTGCATATTGAAGATGGATTCAACTTACTACTGCGCTATGCTGATGTACTGGATGCAGTAGACATTCTCCCTCTTTTCCTTGGTCGTGCAGTGGTTGATTCTATCCTTCCTTCAGGCTTCATCACCAGGGCAAAGGAAGCACTCCCAGAATCTTCCAAGGGGTTTCAGATCATGCAGACTGCAGTGGAAAATAACATTTTTCCTCCATACAACCCAAGTTTGTGGGTATCTAGGGTGGTAGGACGCAGAATACTCTTCAAGTGTTGGAGAAACAAATCGATTCTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

247

Amino Acids

27.6

Weight (kDa)

8.7

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 85 - 188 3.9e-10 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AciI CCGC 1 cut(s) 286
AclWI GGATC 2 cut(s) 227, 240
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 3 cut(s) 281, 303, 501
AgsI TTSAA 4 cut(s) 193, 464, 475, 712
AjnI CCWGG 1 cut(s) 578
AluBI AGCT 3 cut(s) 148, 211, 428
AluI AGCT 3 cut(s) 148, 211, 428
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 2 cut(s) 227, 240
AoxI GGCC 1 cut(s) 139
ApaI GGGCCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 2 cut(s) 139, 140
AsuHPI GGTGA 1 cut(s) 568
BaeGI GKGCMC 1 cut(s) 143
BamHI GGATCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 320
BccI CCATC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 1 cut(s) 633
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 580
BmgT120I GGNCC 2 cut(s) 139, 140
BmiI GGNNCC 2 cut(s) 141, 234
BmrFI CCNGG 1 cut(s) 580
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 145, 496
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 731
BsaJI CCNNGG 5 cut(s) 237, 372, 532, 579, 609
BsaWI WCCGGW 1 cut(s) 216
Bse1I ACTGG 4 cut(s) 73, 229, 295, 507
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 580
BseCI ATCGAT 1 cut(s) 731
BseDI CCNNGG 5 cut(s) 237, 372, 532, 579, 609
BseGI GGATG 3 cut(s) 247, 343, 511
BseMI GCAATG 1 cut(s) 384
BseNI ACTGG 4 cut(s) 73, 229, 295, 507
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 320
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 731
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 4
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 1 cut(s) 141
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 2 cut(s) 232, 621
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 1 cut(s) 286
BspANI GGCC 1 cut(s) 141
BspDI ATCGAT 1 cut(s) 731
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 141, 234
BspMAI CTGCAG 1 cut(s) 637
BspPI GGATC 2 cut(s) 227, 240
BsrDI GCAATG 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 301
BsrI ACTGG 4 cut(s) 73, 229, 295, 507
BssECI CCNNGG 5 cut(s) 237, 372, 532, 579, 609
BssMI GATC 2 cut(s) 232, 621
BssT1I CCWWGG 4 cut(s) 237, 372, 532, 609
Bst2UI CCWGG 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 713
BstAUI TGTACA 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 8, 42
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 3 cut(s) 247, 343, 511
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 2 cut(s) 235, 624
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 2 cut(s) 232, 621
BstMWI GCNNNNNNNGC 2 cut(s) 434, 590
BstNI CCWGG 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 578
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 320
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 675
BstYI RGATCY 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 731
BsuRI GGCC 1 cut(s) 141
BsuTUI ATCGAT 1 cut(s) 731
BtgI CCRYGG 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 3 cut(s) 247, 343, 511
BtsI GCAGTG 3 cut(s) 84, 549, 642
BtsIMutI CAGTG 4 cut(s) 84, 288, 549, 642
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 489
Cfr13I GGNCC 2 cut(s) 139, 140
ClaI ATCGAT 1 cut(s) 731
CseI GACGC 3 cut(s) 29, 35, 705
Csp6I GTAC 3 cut(s) 280, 302, 500
CviAII CATG 5 cut(s) 136, 203, 312, 373, 625
CviJI RGCY 7 cut(s) 112, 141, 148, 211, 428, 450, 570
CviKI_1 RGCY 7 cut(s) 112, 141, 148, 211, 428, 450, 570
CviQI GTAC 3 cut(s) 280, 302, 500
DdeI CTNAG 2 cut(s) 8, 42
DpnI GATC 2 cut(s) 234, 623
DpnII GATC 2 cut(s) 232, 621
Eam1104I CTCTTC 1 cut(s) 713
EarI CTCTTC 1 cut(s) 713
Eco130I CCWWGG 4 cut(s) 237, 372, 532, 609
Eco24I GRGCYC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 4 cut(s) 237, 372, 532, 609
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 4 cut(s) 237, 372, 532, 609
FaeI CATG 5 cut(s) 139, 206, 315, 376, 628
FaqI GGGAC 1 cut(s) 375
FatI CATG 5 cut(s) 135, 202, 311, 372, 624
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 3 cut(s) 254, 330, 518
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 684
GlaI GCGC 1 cut(s) 488
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 217
HgaI GACGC 3 cut(s) 29, 35, 705
HhaI GCGC 1 cut(s) 489
Hin1II CATG 5 cut(s) 139, 206, 315, 376, 628
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 7 cut(s) 167, 334, 363, 471, 551, 602, 733
HpaII CCGG 1 cut(s) 217
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 2 cut(s) 222, 514
Hpy188I TCNGA 3 cut(s) 96, 323, 621
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 222, 514
HpyAV CCTTC 2 cut(s) 569, 573
HpyCH4V TGCA 6 cut(s) 116, 457, 509, 542, 628, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 590
HpyF3I CTNAG 2 cut(s) 8, 42
Hsp92II CATG 5 cut(s) 139, 206, 315, 376, 628
HspAI GCGC 1 cut(s) 487
Kzo9I GATC 2 cut(s) 232, 621
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 2 cut(s) 145, 496
MaeI CTAG 1 cut(s) 684
MalI GATC 2 cut(s) 234, 623
MboI GATC 2 cut(s) 232, 621
MboII GAAGA 5 cut(s) 181, 402, 476, 597, 700
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 143
MlyI GAGTC 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 698
MnlI CCTC 8 cut(s) 75, 114, 119, 221, 310, 317, 534, 666
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 580
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 1 cut(s) 580
MwoI GCNNNNNNNGC 2 cut(s) 434, 590
NcoI CCATGG 1 cut(s) 372
NdeII GATC 2 cut(s) 232, 621
NlaIII CATG 5 cut(s) 139, 206, 315, 376, 628
NlaIV GGNNCC 2 cut(s) 141, 234
PagI TCATGA 1 cut(s) 202
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 6 cut(s) 167, 334, 471, 551, 602, 733
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 2 cut(s) 141, 234
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 139, 140
PstI CTGCAG 1 cut(s) 637
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 3 cut(s) 281, 303, 501
RsaNI GTAC 3 cut(s) 280, 302, 500
RseI CAYNNNNRTG 1 cut(s) 377
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 2 cut(s) 232, 621
Sau96I GGNCC 2 cut(s) 139, 140
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 1 cut(s) 143
SetI ASST 5 cut(s) 130, 150, 213, 321, 430
SfaNI GCATC 2 cut(s) 145, 496
SfcI CTRYAG 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 377
SsiI CCGC 1 cut(s) 286
SspI AATATT 1 cut(s) 298
SspMI CTAG 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 578
StyI CCWWGG 4 cut(s) 237, 372, 532, 609
TaqI TCGA 1 cut(s) 731
TatI WGTACW 3 cut(s) 279, 301, 499
TfiI GAWTC 6 cut(s) 167, 334, 471, 551, 602, 733
TscAI CASTG 4 cut(s) 84, 295, 549, 642
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 258, 402, 562
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 4 cut(s) 84, 295, 549, 642
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 1 cut(s) 684
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.