Rh7AG289900

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016458
Physical Location & Seq
Forward (+)
31352349 .. 31353808
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG289900.1

Sequence Viewer

Length: 747 bp
ATGTGGATATCTCGTCATCAACCCCCCCCATCCCCTAAGTCCGTTCTCTCTGCCAATGCCACACCACCAGCTGGGGTAGCAGTGAGGAATGTGGGTCAGACACACTCACGGAAGCCTGCAAAGAGGGGAGGTGGTGGCATGGGCCCAAAGCTGTTTGATGCTGGTGCTGAATCCCAGATATATCGTAATGTCTTCAACAATCATCATGAGAAGCTTGTCCGGTCAACTGGAGGGGATCCCTTGGATGAATACAACAAAGATATTGCCTACATTGTTAGGGAGTACTTCCGCACTGGTAATATTGTACAGGCAGCATGGGAGGTCAGAGGAATGCCGAATCAGTATCATCCTTACTTCGTTCAGGGACTCGTTTCCATGGCAATGTCCAGCGATGATGAGAACAAGGAGATTTCTTCATCTTTGCTTTCAGCTTTGTATGCTGATGTCATTAGCCCTGTGCATATTGAAGATGGATTCAACTTACTACTGCGCTATGCTGATGTACTGGATGCAGTAGACATTCTCCCTCTTTTCCTTGGTCGTGCAGTGGTTGATTCTATCCTTCCTTCAGGCTTCATCACCAGGGCAAAGGAAGCACTCCCAGAATCTTCCAAGGGGTTTCAGATCATGCAGACTGCAGTGGAAAATAACATTTTTCCTCCATACAACCCAAGTTTGTGGGTATCTAGGGTGGTAGGACGCAGAATACTCTTCAAGTGTTGGAGAAACAAATCGATTCTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

248

Amino Acids

27.54

Weight (kDa)

9.04

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 86 - 189 4e-10 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AccI GTMKAC 1 cut(s) 516
AciI CCGC 1 cut(s) 289
AclWI GGATC 2 cut(s) 230, 243
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 3 cut(s) 284, 306, 504
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 4 cut(s) 196, 467, 478, 715
AjnI CCWGG 1 cut(s) 581
AluBI AGCT 4 cut(s) 71, 151, 214, 431
AluI AGCT 4 cut(s) 71, 151, 214, 431
AlwI GGATC 2 cut(s) 230, 243
AoxI GGCC 1 cut(s) 142
ApaI GGGCCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 2 cut(s) 142, 143
AsuHPI GGTGA 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 146
BamHI GGATCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 323
BccI CCATC 2 cut(s) 37, 464
BciT130I CCWGG 1 cut(s) 583
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 636
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 583
BmgT120I GGNCC 2 cut(s) 142, 143
BmiI GGNNCC 2 cut(s) 144, 237
BmrFI CCNGG 1 cut(s) 583
BmsI GCATC 2 cut(s) 148, 499
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 734
BsaJI CCNNGG 5 cut(s) 240, 375, 535, 582, 612
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 3 cut(s) 232, 298, 510
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 583
BseCI ATCGAT 1 cut(s) 734
BseDI CCNNGG 5 cut(s) 240, 375, 535, 582, 612
BseGI GGATG 4 cut(s) 29, 250, 346, 514
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMI GCAATG 1 cut(s) 387
BseNI ACTGG 3 cut(s) 232, 298, 510
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 1 cut(s) 323
BseYI CCCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 734
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 1 cut(s) 144
Bsp120I GGGCCC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 146
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 235, 624
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 144
BspDI ATCGAT 1 cut(s) 734
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 144, 237
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 2 cut(s) 230, 243
BsrDI GCAATG 1 cut(s) 387
BsrGI TGTACA 1 cut(s) 304
BsrI ACTGG 3 cut(s) 232, 298, 510
BssECI CCNNGG 5 cut(s) 240, 375, 535, 582, 612
BssMI GATC 2 cut(s) 235, 624
BssT1I CCWWGG 4 cut(s) 240, 375, 535, 612
Bst2UI CCWGG 1 cut(s) 583
Bst6I CTCTTC 1 cut(s) 716
BstAUI TGTACA 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 4 cut(s) 29, 250, 346, 514
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 2 cut(s) 238, 627
BstMBI GATC 2 cut(s) 235, 624
BstMWI GCNNNNNNNGC 3 cut(s) 77, 437, 593
BstNI CCWGG 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 581
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 678
BstYI RGATCY 1 cut(s) 235
Bsu15I ATCGAT 1 cut(s) 734
BsuRI GGCC 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 734
BtgI CCRYGG 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 405
BtsCI GGATG 4 cut(s) 29, 250, 346, 514
BtsI GCAGTG 3 cut(s) 87, 552, 645
BtsIMutI CAGTG 4 cut(s) 87, 291, 552, 645
Cac8I GCNNGC 1 cut(s) 117
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 142, 143
ClaI ATCGAT 1 cut(s) 734
CseI GACGC 1 cut(s) 708
Csp6I GTAC 3 cut(s) 283, 305, 503
CviAII CATG 5 cut(s) 139, 206, 315, 376, 628
CviJI RGCY 8 cut(s) 71, 115, 144, 151, 214, 431, 453, 573
CviKI_1 RGCY 8 cut(s) 71, 115, 144, 151, 214, 431, 453, 573
CviQI GTAC 3 cut(s) 283, 305, 503
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 237, 626
DpnII GATC 2 cut(s) 235, 624
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
Eco130I CCWWGG 4 cut(s) 240, 375, 535, 612
Eco24I GRGCYC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 581
EcoRV GATATC 1 cut(s) 9
EcoT14I CCWWGG 4 cut(s) 240, 375, 535, 612
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 4 cut(s) 240, 375, 535, 612
FaeI CATG 5 cut(s) 142, 209, 318, 379, 631
FaqI GGGAC 1 cut(s) 378
FatI CATG 5 cut(s) 138, 205, 314, 375, 627
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 4 cut(s) 16, 257, 333, 521
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 491
GluI GCNGC 1 cut(s) 312
GsaI CCCAGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 220
HgaI GACGC 1 cut(s) 708
HhaI GCGC 1 cut(s) 492
Hin1II CATG 5 cut(s) 142, 209, 318, 379, 631
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 7 cut(s) 170, 337, 366, 474, 554, 605, 736
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 2 cut(s) 225, 517
Hpy188I TCNGA 3 cut(s) 99, 326, 624
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 2 cut(s) 225, 517
HpyAV CCTTC 2 cut(s) 572, 576
HpyCH4V TGCA 6 cut(s) 119, 460, 512, 545, 631, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 437, 593
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 5 cut(s) 142, 209, 318, 379, 631
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 235, 624
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 2 cut(s) 148, 499
MaeI CTAG 1 cut(s) 687
MalI GATC 2 cut(s) 237, 626
MboI GATC 2 cut(s) 235, 624
MboII GAAGA 5 cut(s) 184, 405, 479, 600, 703
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 146
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 701
MnlI CCTC 8 cut(s) 78, 117, 122, 224, 313, 320, 537, 669
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 583
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 1 cut(s) 583
MwoI GCNNNNNNNGC 3 cut(s) 77, 437, 593
NcoI CCATGG 1 cut(s) 375
NdeII GATC 2 cut(s) 235, 624
NlaIII CATG 5 cut(s) 142, 209, 318, 379, 631
NlaIV GGNNCC 2 cut(s) 144, 237
PagI TCATGA 1 cut(s) 205
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 6 cut(s) 170, 337, 474, 554, 605, 736
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 581
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 1 cut(s) 581
PspN4I GGNNCC 2 cut(s) 144, 237
PspOMI GGGCCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 142, 143
PstI CTGCAG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 3 cut(s) 284, 306, 504
RsaNI GTAC 3 cut(s) 283, 305, 503
RseI CAYNNNNRTG 1 cut(s) 380
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 235, 624
Sau96I GGNCC 2 cut(s) 142, 143
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 1 cut(s) 583
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 73, 133, 153, 216, 324, 433
SfaNI GCATC 2 cut(s) 148, 499
SfcI CTRYAG 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 380
SsiI CCGC 1 cut(s) 289
SspI AATATT 1 cut(s) 301
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 581
StyI CCWWGG 4 cut(s) 240, 375, 535, 612
TaqI TCGA 1 cut(s) 734
TatI WGTACW 3 cut(s) 282, 304, 502
TfiI GAWTC 6 cut(s) 170, 337, 474, 554, 605, 736
TscAI CASTG 4 cut(s) 87, 298, 552, 645
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 3 cut(s) 261, 405, 565
TspGWI ACGGA 2 cut(s) 31, 124
TspRI CASTG 4 cut(s) 87, 298, 552, 645
Van91I CCANNNNNTGG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 1 cut(s) 687
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.