Rw7G024770

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016458
Physical Location & Seq
Forward (+)
30747947 .. 30750350
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024770.1

Sequence Viewer

Length: 921 bp
ATGGCATCAAGTAGAGGAGAGCAGGGGGGAACCGGGCGAAATGTGGATATCTCGTCATCAACCCCCCCATCCCCTAAGTCCATTCTCTCTGCCAATGCCACACCACCAGCTGGGGTAGCAGTGAGGAATGTGGGTCAGACACACTCACGGAAGCCTGCAAAGAGGGGAGGTGGTGGCATGGACCCAAAGCTGTTTGATGCTGGTGCTGAATCCCAGATATATCGTAATGTCTTCAACAATCATCATGAGAAGCTTGTCCGGTCAACTGGAGGGGATCCCTCGGATGAATGCAACAAAGATATTGCCTACATTTTTAGGGAGTACTTCCGCACTGGTAATATTGTACAGGCAGCATGGGAGGTCAGAGGAATGCCGAATCAGTATCATCCTTACTTCGTTCAGGGACTCGTTTCCATGGCAATGTCCAGTGATGATGAGAACAAGGAGATTTCTTCATCTTTGCTTTCAGCTTTGTATGCTGATGTCATTAGCCCTGTGCATATTGAAGATGGATTCAACTTACTACTGCGCTATGCTGATGTACTGGATGCAGTAGACATTCTCCCTCTTTTCCTTGGTCGTGCAGTGGTTGATTCTATCCTTCCTTCAGGCTTCATCACCAGGGCAAAGGAAGCACTCCCAGAATCTTCCAAGGGGTTTCAGATCATGCAGAATGCAGTGGAAAATAACATTTTTCCTCCATATAGCCCAAGTTTTGTGGGTATCTGGGGTGGTAGGACGCAGAATACTCTTCAAGTGTTGGAGAAACAAATTGATTCTCTGTTGACGGAATATAAAGAAAGTAGAGATGCTCTCCTAACCTGTAAGGACATAAGGAAGGTGATACCTCCTCTGTTTGAACATCAATTTGTTGCCTCCACTTTAATTGCTTGCATGGAGAATTGGGGAGAAGCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

306

Amino Acids

33.52

Weight (kDa)

5.58

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 98 - 202 4.1e-09 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 1 cut(s) 555
AciI CCGC 1 cut(s) 328
AclWI GGATC 2 cut(s) 269, 282
AcuI CTGAAG 1 cut(s) 591
AfaI GTAC 3 cut(s) 323, 345, 543
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 5 cut(s) 235, 506, 517, 755, 860
AjnI CCWGG 1 cut(s) 620
AluBI AGCT 4 cut(s) 110, 190, 253, 470
AluI AGCT 4 cut(s) 110, 190, 253, 470
AlwI GGATC 2 cut(s) 269, 282
ApeKI GCWGC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 610, 853
AvaII GGWCC 1 cut(s) 181
BamHI GGATCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 362
BccI CCATC 2 cut(s) 76, 503
BciT130I CCWGG 1 cut(s) 622
BcnI CCSGG 1 cut(s) 34
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 2 cut(s) 34, 622
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 3 cut(s) 31, 183, 276
BmrFI CCNGG 2 cut(s) 34, 622
BmsI GCATC 4 cut(s) 14, 187, 538, 799
BpiI GAAGAC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 798, 830
BpmI CTGGAG 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 5 cut(s) 279, 414, 574, 621, 651
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 4 cut(s) 271, 337, 426, 549
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 622
BseDI CCNNGG 5 cut(s) 279, 414, 574, 621, 651
BseGI GGATG 4 cut(s) 68, 289, 385, 553
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 426
BseNI ACTGG 4 cut(s) 271, 337, 426, 549
BseRI GAGGAG 2 cut(s) 30, 840
BseXI GCAGC 1 cut(s) 362
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 603
BsiSI CCGG 2 cut(s) 33, 259
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 417
BsmI GAATGC 3 cut(s) 293, 375, 679
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 2 cut(s) 274, 663
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 1 cut(s) 328
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 3 cut(s) 31, 183, 276
BspPI GGATC 2 cut(s) 269, 282
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 4 cut(s) 271, 337, 426, 549
BssECI CCNNGG 5 cut(s) 279, 414, 574, 621, 651
BssMI GATC 2 cut(s) 274, 663
BssT1I CCWWGG 3 cut(s) 414, 574, 651
Bst2UI CCWGG 1 cut(s) 622
Bst6I CTCTTC 1 cut(s) 756
BstAUI TGTACA 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 156, 892
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 4 cut(s) 68, 289, 385, 553
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 2 cut(s) 277, 666
BstMBI GATC 2 cut(s) 274, 663
BstMWI GCNNNNNNNGC 3 cut(s) 116, 476, 632
BstNI CCWGG 1 cut(s) 622
BstSCI CCNGG 2 cut(s) 32, 620
BstV1I GCAGC 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 4 cut(s) 68, 289, 385, 553
BtsI GCAGTG 3 cut(s) 126, 591, 684
BtsIMutI CAGTG 5 cut(s) 126, 330, 433, 591, 684
Cac8I GCNNGC 2 cut(s) 156, 892
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 748
Csp6I GTAC 3 cut(s) 322, 344, 542
CspCI CAANNNNNGTGG 4 cut(s) 699, 734, 868, 903
CviAII CATG 7 cut(s) 178, 245, 354, 415, 667, 895, 918
CviJI RGCY 8 cut(s) 110, 154, 190, 253, 470, 492, 612, 708
CviKI_1 RGCY 8 cut(s) 110, 154, 190, 253, 470, 492, 612, 708
CviQI GTAC 3 cut(s) 322, 344, 542
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 276, 665
DpnII GATC 2 cut(s) 274, 663
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Eco130I CCWWGG 3 cut(s) 414, 574, 651
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 620
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 3 cut(s) 414, 574, 651
ErhI CCWWGG 3 cut(s) 414, 574, 651
FaeI CATG 7 cut(s) 181, 248, 357, 418, 670, 898, 921
FaqI GGGAC 1 cut(s) 417
FatI CATG 7 cut(s) 177, 244, 353, 414, 666, 894, 917
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 4 cut(s) 55, 296, 372, 560
Fsp4HI GCNGC 1 cut(s) 351
GlaI GCGC 1 cut(s) 530
GluI GCNGC 1 cut(s) 351
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 288
HapII CCGG 2 cut(s) 33, 259
HgaI GACGC 1 cut(s) 748
HhaI GCGC 1 cut(s) 531
Hin1II CATG 7 cut(s) 181, 248, 357, 418, 670, 898, 921
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HincII GTYRAC 2 cut(s) 264, 786
HindII GTYRAC 2 cut(s) 264, 786
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 7 cut(s) 209, 376, 405, 513, 593, 644, 776
HpaII CCGG 2 cut(s) 33, 259
HphI GGTGA 2 cut(s) 610, 853
Hpy166II GTNNAC 3 cut(s) 264, 556, 786
Hpy188I TCNGA 4 cut(s) 138, 283, 365, 663
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 3 cut(s) 264, 556, 786
HpyAV CCTTC 3 cut(s) 611, 615, 832
HpyCH4V TGCA 8 cut(s) 158, 291, 499, 551, 584, 670, 677, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 476, 632
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 7 cut(s) 181, 248, 357, 418, 670, 898, 921
HspAI GCGC 1 cut(s) 529
Kzo9I GATC 2 cut(s) 274, 663
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 4 cut(s) 14, 187, 538, 799
MalI GATC 2 cut(s) 276, 665
MboI GATC 2 cut(s) 274, 663
MboII GAAGA 5 cut(s) 223, 444, 518, 639, 743
MflI RGATCY 1 cut(s) 274
MluCI AATT 4 cut(s) 771, 866, 885, 901
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 741
MseI TTAA 1 cut(s) 884
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 2 cut(s) 33, 259
MspR9I CCNGG 2 cut(s) 34, 622
Mva1269I GAATGC 3 cut(s) 293, 375, 679
MvaI CCWGG 1 cut(s) 622
MwoI GCNNNNNNNGC 3 cut(s) 116, 476, 632
NciI CCSGG 1 cut(s) 34
NcoI CCATGG 1 cut(s) 414
NdeII GATC 2 cut(s) 274, 663
NlaIII CATG 7 cut(s) 181, 248, 357, 418, 670, 898, 921
NlaIV GGNNCC 3 cut(s) 31, 183, 276
PagI TCATGA 1 cut(s) 244
PctI GAATGC 3 cut(s) 293, 375, 679
PfeI GAWTC 6 cut(s) 209, 376, 513, 593, 644, 776
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 620
PspN4I GGNNCC 3 cut(s) 31, 183, 276
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 3 cut(s) 323, 345, 543
RsaNI GTAC 3 cut(s) 322, 344, 542
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 1 cut(s) 884
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 274, 663
Sau96I GGNCC 1 cut(s) 181
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 2 cut(s) 34, 622
SetI ASST 9 cut(s) 112, 172, 192, 255, 363, 472, 824, 843, 850
SfaNI GCATC 4 cut(s) 14, 187, 538, 799
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 4 cut(s) 771, 866, 885, 901
SsiI CCGC 1 cut(s) 328
SspI AATATT 1 cut(s) 340
StyD4I CCNGG 2 cut(s) 32, 620
StyI CCWWGG 3 cut(s) 414, 574, 651
TasI AATT 4 cut(s) 771, 866, 885, 901
TatI WGTACW 3 cut(s) 321, 343, 541
TfiI GAWTC 6 cut(s) 209, 376, 513, 593, 644, 776
Tru1I TTAA 1 cut(s) 884
Tru9I TTAA 1 cut(s) 884
TscAI CASTG 5 cut(s) 126, 337, 433, 591, 684
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 300, 444, 604
TspGWI ACGGA 2 cut(s) 163, 803
TspRI CASTG 5 cut(s) 126, 337, 433, 591, 684
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 555
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.