Rorug07G0153600

Programmed cell death protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
12187084 .. 12188322
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0153600.1

Sequence Viewer

Length: 348 bp
ATGCTTCCAGGTCGTATTGTTTGGCTGTTAAAACCCGCTGCCAACCTCATCTCTCAGTTTGCTTCAACAAGGAATGAAACAAATAATAGTAAATTCAGAAACCCTGAAGCTAAAGCATTAAAGAAGGTGGAGGATAAGACCAAAGTTGCCAGGGCATTGAAGGAAAGTGTTCTCCATCAAATAAGTGCTTGCCAGCAAAGGGTGAAGAGTCTGGTGAATGCGAAAGATATTCCAAATATTATCGTTCGCCTTGTCCGGTTGAATGGCATAGCCTTGGCAAAGTTTGCACCAGAATCACAGGGCACACTGAATTTTAAGTTTGGAACTTCTTCTGGAGCTGTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.6

Weight (kDa)

10.63

Isoelectric Point (pI)

23.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AcsI RAATTY 2 cut(s) 92, 310
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 3 cut(s) 66, 160, 262
AjnI CCWGG 2 cut(s) 7, 149
AluBI AGCT 2 cut(s) 110, 338
AluI AGCT 2 cut(s) 110, 338
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 92, 310
Asp700I GAANNNNTTC 2 cut(s) 168, 328
AsuHPI GGTGA 2 cut(s) 214, 226
BaeGI GKGCMC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 9, 151
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 9, 151
BmrFI CCNGG 2 cut(s) 9, 151
BsaJI CCNNGG 2 cut(s) 150, 273
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 9, 151
BseDI CCNNGG 2 cut(s) 150, 273
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 199
BsmI GAATGC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 305
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 150, 273
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 9, 151
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 190, 194
BstDEI CTNAG 2 cut(s) 54, 345
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 2 cut(s) 9, 151
BstSCI CCNGG 2 cut(s) 7, 149
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 190, 194
CviJI RGCY 4 cut(s) 25, 110, 272, 338
CviKI_1 RGCY 4 cut(s) 25, 110, 272, 338
DdeI CTNAG 2 cut(s) 54, 345
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 7, 149
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaiI YATR 1 cut(s) 269
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HapII CCGG 1 cut(s) 256
HinfI GANTC 2 cut(s) 208, 293
HpaII CCGG 1 cut(s) 256
HphI GGTGA 2 cut(s) 214, 226
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 333
HpyAV CCTTC 2 cut(s) 118, 154
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 54, 345
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 1 cut(s) 25
MboII GAAGA 2 cut(s) 217, 321
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 2 cut(s) 92, 310
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 2 cut(s) 56, 124
MroXI GAANNNNTTC 2 cut(s) 168, 328
MseI TTAA 3 cut(s) 29, 119, 315
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 9, 151
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 2 cut(s) 9, 151
MwoI GCNNNNNNNGC 1 cut(s) 284
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 168, 328
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 7, 149
PspGI CCWGG 2 cut(s) 7, 149
SaqAI TTAA 3 cut(s) 29, 119, 315
SatI GCNGC 1 cut(s) 39
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 9, 151
SduI GDGCHC 1 cut(s) 305
SetI ASST 5 cut(s) 13, 48, 112, 129, 340
Sse9I AATT 2 cut(s) 92, 310
SsiI CCGC 1 cut(s) 36
SspI AATATT 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 7, 149
StyI CCWWGG 1 cut(s) 273
TasI AATT 2 cut(s) 92, 310
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 3 cut(s) 29, 119, 315
Tru9I TTAA 3 cut(s) 29, 119, 315
TscAI CASTG 1 cut(s) 312
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 1 cut(s) 312
XapI RAATTY 2 cut(s) 92, 310
XmnI GAANNNNTTC 2 cut(s) 168, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.