Rorug07G0153800

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000749
Physical Location & Seq
Reverse (-)
12190209 .. 12200327
10119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0153800.1

Sequence Viewer

Length: 636 bp
ATGGCTGAGAACATCAACCAGGCTTATCCTTTGGCACCAGCAAATGGTTACACAAGAAGTGACAGAGAATCTTTGGTCTCTGAAGACGAACTCAAACGCAGGAAGAGAATCAAATTGTTTACCTATATTGGTATTTTCGTTGTTTTTCAGATCATTGTCATGACCGTGTTTGGTCTCACTGTGATGAAAGTCAAGACCCCAAAGGTGAGGTTGGGCGAAATCAGCATCACAAACTTTAACTCAGCAGCTGCAACTCCTTCATTTGACACAACCTTCAACACCCAAATCAGGGTCAAGAACACCAACTGGGGTCCTTACAAATTTGATGCGGGCACTGTAACATTCACGTACCAAGGCACGCCTGTCGGGACAGTAATGGTACCTAAGAGCAAAGCTGGAATGCGCTCTACCAAGAAAATCAACGTCGAAGTGAGTTTAAACACTGATGCATTGCCAAGCAGTTCAACTCTTAGCAGTGAATTGAACAGTGGGGTGTTGACGCTGACTAGCCAAGCCAAATTGACTGGAAAGGTGGAATTGATGCTCATAATGAAGAAGAAGAAGTCTGCCAATATGGACTGCACCATAGCTTTAGATTTGTCCACAAAGACTATCAAAAGTTTACAGTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

211

Amino Acids

23.22

Weight (kDa)

9.88

Isoelectric Point (pI)

26.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 96 - 195 7e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 2 cut(s) 34, 379
AccB7I CCANNNNNTGG 1 cut(s) 44
AciI CCGC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 2 cut(s) 350, 381
AfiI CCNNNNNNNGG 3 cut(s) 44, 288, 289
AgsI TTSAA 3 cut(s) 277, 465, 484
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 3 cut(s) 248, 395, 590
AluI AGCT 3 cut(s) 248, 395, 590
Alw26I GTCTC 2 cut(s) 82, 179
AlwNI CAGNNNCTG 1 cut(s) 248
ApeKI GCWGC 2 cut(s) 245, 248
ApoI RAATTY 1 cut(s) 320
Asp718I GGTACC 1 cut(s) 379
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 335
BanI GGYRCC 2 cut(s) 34, 379
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 235, 257
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 82, 179
BfaI CTAG 1 cut(s) 507
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 3 cut(s) 36, 312, 381
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 4 cut(s) 234, 316, 436, 531
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 348
BsaI GGTCTC 2 cut(s) 82, 179
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 288, 289
Bse1I ACTGG 2 cut(s) 311, 529
Bse3DI GCAATG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 3 cut(s) 44, 288, 289
BseMI GCAATG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 311, 529
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 2 cut(s) 235, 257
BsgI GTGCAG 1 cut(s) 565
BshNI GGYRCC 2 cut(s) 34, 379
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 3 cut(s) 44, 288, 289
BsmAI GTCTC 2 cut(s) 82, 179
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 405
Bso31I GGTCTC 2 cut(s) 82, 179
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 254
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 36, 312, 381
BspT107I GGYRCC 2 cut(s) 34, 379
BspTNI GGTCTC 2 cut(s) 82, 179
BsrDI GCAATG 1 cut(s) 449
BsrI ACTGG 2 cut(s) 311, 529
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 6 cut(s) 166, 181, 337, 373, 488, 627
Bst6I CTCTTC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 331, 359
BstDEI CTNAG 4 cut(s) 6, 241, 384, 470
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 2 cut(s) 82, 179
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 235, 257
BstV2I GAAGAC 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 6 cut(s) 177, 333, 441, 481, 493, 632
Cac8I GCNNGC 2 cut(s) 331, 359
CaiI CAGNNNCTG 1 cut(s) 248
CciI TCATGA 1 cut(s) 159
CfoI GCGC 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 508
Csp6I GTAC 2 cut(s) 349, 380
CviAII CATG 1 cut(s) 160
CviJI RGCY 7 cut(s) 5, 23, 248, 395, 510, 515, 590
CviKI_1 RGCY 7 cut(s) 5, 23, 248, 395, 510, 515, 590
CviQI GTAC 2 cut(s) 349, 380
DdeI CTNAG 4 cut(s) 6, 241, 384, 470
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
DraI TTTAAA 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 352
Eco31I GGTCTC 2 cut(s) 82, 179
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 163
FaiI YATR 5 cut(s) 126, 161, 548, 575, 587
FaqI GGGAC 1 cut(s) 382
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 246, 249
Fsp4HI GCNGC 2 cut(s) 246, 249
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 404
GluI GCNGC 2 cut(s) 246, 249
HgaI GACGC 1 cut(s) 508
HhaI GCGC 1 cut(s) 405
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 2 cut(s) 68, 108
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 4 cut(s) 120, 498, 603, 623
Hpy188I TCNGA 2 cut(s) 82, 150
Hpy188III TCNNGA 4 cut(s) 160, 193, 295, 367
Hpy8I GTNNAC 4 cut(s) 120, 498, 603, 623
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 267, 283
HpyCH4III ACNGT 6 cut(s) 166, 181, 337, 373, 488, 627
HpyCH4IV ACGT 2 cut(s) 347, 423
HpyCH4V TGCA 4 cut(s) 251, 449, 582, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 4 cut(s) 6, 241, 384, 470
HpySE526I ACGT 2 cut(s) 347, 423
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 1 cut(s) 403
KpnI GGTACC 1 cut(s) 383
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 9 cut(s) 5, 32, 51, 85, 274, 292, 375, 381, 510
Lsp1109I GCAGC 2 cut(s) 235, 257
LweI GCATC 4 cut(s) 234, 316, 436, 531
MaeI CTAG 1 cut(s) 507
MaeII ACGT 2 cut(s) 347, 423
MaeIII GTNAC 3 cut(s) 47, 59, 337
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 5 cut(s) 95, 115, 565, 568, 571
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 5 cut(s) 113, 320, 479, 518, 536
MnlI CCTC 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 451
MseI TTAA 2 cut(s) 237, 437
MslI CAYNNNNRTG 3 cut(s) 158, 164, 182
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 20
MssI GTTTAAAC 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 3 cut(s) 36, 312, 381
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 451
PagI TCATGA 1 cut(s) 159
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 68, 108
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 2 cut(s) 247, 250
PmeI GTTTAAAC 1 cut(s) 438
Ppu21I YACGTR 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 36, 312, 381
PspPI GGNCC 1 cut(s) 311
PspPPI RGGWCCY 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 2 cut(s) 350, 381
RsaNI GTAC 2 cut(s) 349, 380
RseI CAYNNNNRTG 3 cut(s) 158, 164, 182
SaqAI TTAA 2 cut(s) 237, 437
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 4 cut(s) 234, 316, 436, 531
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 3 cut(s) 158, 164, 182
Sse9I AATT 5 cut(s) 113, 320, 479, 518, 536
SsiI CCGC 1 cut(s) 329
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 6 cut(s) 166, 181, 337, 373, 488, 627
TaiI ACGT 2 cut(s) 350, 426
TaqI TCGA 1 cut(s) 426
TasI AATT 5 cut(s) 113, 320, 479, 518, 536
TfiI GAWTC 2 cut(s) 68, 108
Tru1I TTAA 2 cut(s) 237, 437
Tru9I TTAA 2 cut(s) 237, 437
TscAI CASTG 6 cut(s) 184, 340, 448, 481, 493, 632
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 245, 248
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 200, 249, 566
TspRI CASTG 6 cut(s) 184, 340, 448, 481, 493, 632
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 320
XspI CTAG 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.