Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

30066784 .. 30069218

Gene Structure 2435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGACAACGAAGACGATGACCGCCACCAAACAAAGTCGTCTTCAAAATCATCAACAAAACCATCATCCAAAGACGCTGGTTCTGATGCTGAAGACGATAAGAAAAGCCAAACCAAGACGTCTACAACATCATCGACAAAGCCATCATCCAAAGATATTGCTAAAGACGATAAGAAAACTGAAACGAAGGCGTCTACAACGTCATCGGCAAAGCCATCATCCAAAGGCACTGGTTCTGACGCTGAAGACGATAAGAGCAGCCAAACCAAGAGTTCCACAAAGTCATCGACAAAGCCATCATCCAAAGAGGCTACTTCAGATGCCGAAGACGATACGAAACGTGAAACGAAGGCGTCTACAAAGCCATCATCCAAAGCTTCTAGTTCCGAAGTTGAAGACGATACCAAAACTGAAACCAAGACGTCTACAAAGTCATCGACAAAACCATCATCCAAAGCTACTAGTTCTGATGATGCTGAAGACGATGAGAGCGACCAACACAAGACGTCCACAAAGTCAACAACAAAACCATCATCCAAAGGTAGTGGTAAGGACTCAGACAAAGATGAAATAACCGAGAGAAAATTACCTACTAAGTCGTCGGGAGGTGCCCATGCAGAGAAGAAGGACCATGTTCCGACCACTAGTGAGCTGATGAGCAGCGCGAAGGTGTTAGCGTCAGCAGCGCAGGGGGAAAATGTGGAGAAGGCCGAGTTGGCCGGGGCAGCGAGCAACCTTCTTGGCGCGGCCAATCACTACGGCCAACTCGATGAGAAAGGGTTGGGATCGTATGTGACCAAGGCCGAGGATATGCTACGTAAGTTTGGCCAGAAGTCTGATTCTGAGTCTGGCACCGGTGCTAGTAAGACTAAGGAGACGACTACTAAGAAGGAGGAAGAGAAACCAGTGAAGAAGCCAGCTGCTAAAGATGATGATGAGGAAGAAGGTGGTGGGTTTGGAGATTTTATGAAGATGGCGAAGGGTTTCTTGAAGGGTTGTCGGAGCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

35.34

Weight (kDa)

6.1

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	122, 425, 509
AccB1I	GGYRCC	2 cut(s)	608, 851
AccI	GTMKAC	4 cut(s)	122, 194, 356, 425
AccII	CGCG	2 cut(s)	665, 746
AciI	CCGC	2 cut(s)	22, 746
AclWI	GGATC	1 cut(s)	793
AcoI	YGGCCR	4 cut(s)	717, 747, 760, 826
AcuI	CTGAAG	4 cut(s)	111, 264, 300, 498
AcyI	GRCGYC	5 cut(s)	119, 191, 353, 422, 506
AgeI	ACCGGT	1 cut(s)	854
AgsI	TTSAA	3 cut(s)	45, 395, 991
AhlI	ACTAGT	2 cut(s)	461, 644
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	4 cut(s)	377, 458, 652, 920
AluI	AGCT	4 cut(s)	377, 458, 652, 920
Alw26I	GTCTC	1 cut(s)	869
AlwI	GGATC	1 cut(s)	793
AoxI	GGCC	6 cut(s)	708, 717, 747, 760, 801, 826
ApeKI	GCWGC	5 cut(s)	258, 660, 683, 725, 920
AsiGI	ACCGGT	1 cut(s)	854
Asp700I	GAANNNNTTC	1 cut(s)	983
AspLEI	GCGC	3 cut(s)	665, 688, 746
AspS9I	GGNCC	1 cut(s)	628
AsuC2I	CCSGG	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	613
BalI	TGGCCA	1 cut(s)	828
BanI	GGYRCC	2 cut(s)	608, 851
BbsI	GAAGAC	7 cut(s)	18, 33, 99, 252, 333, 402, 486
BbvI	GCAGC	5 cut(s)	270, 672, 695, 737, 907
BccI	CCATC	8 cut(s)	70, 151, 223, 304, 373, 454, 538, 967
BceAI	ACGGC	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	1 cut(s)	869
BcuI	ACTAGT	2 cut(s)	461, 644
BfaI	CTAG	5 cut(s)	381, 462, 645, 861, 1009
BglI	GCCNNNNNGGC	1 cut(s)	716
BisI	GCNGC	6 cut(s)	259, 661, 684, 726, 747, 921
BlsI	GCNGC	6 cut(s)	260, 662, 685, 727, 748, 922
Bme1390I	CCNGG	1 cut(s)	721
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	628
BmiI	GGNNCC	2 cut(s)	610, 853
BmrFI	CCNGG	1 cut(s)	721
BmsI	GCATC	3 cut(s)	76, 310, 463
BpiI	GAAGAC	7 cut(s)	18, 33, 99, 252, 333, 402, 486
BpuMI	CCSGG	1 cut(s)	721
BsaAI	YACGTR	1 cut(s)	818
BsaHI	GRCGYC	5 cut(s)	119, 191, 353, 422, 506
BsaJI	CCNNGG	3 cut(s)	720, 798, 804
BsaWI	WCCGGW	1 cut(s)	854
Bse118I	RCCGGY	1 cut(s)	854
Bse1I	ACTGG	2 cut(s)	235, 905
BseDI	CCNNGG	3 cut(s)	720, 798, 804
BseGI	GGATG	7 cut(s)	65, 146, 218, 299, 368, 449, 533
BseMII	CTCAG	2 cut(s)	570, 834
BseNI	ACTGG	2 cut(s)	235, 905
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	5 cut(s)	270, 672, 695, 737, 907
Bsh1236I	CGCG	2 cut(s)	665, 746
BshFI	GGCC	6 cut(s)	710, 719, 749, 762, 803, 828
BshNI	GGYRCC	2 cut(s)	608, 851
BshTI	ACCGGT	1 cut(s)	854
BsiSI	CCGG	2 cut(s)	720, 855
BsmAI	GTCTC	1 cut(s)	869
BsmBI	CGTCTC	1 cut(s)	869
BsnI	GGCC	6 cut(s)	710, 719, 749, 762, 803, 828
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	1 cut(s)	785
BspACI	CCGC	2 cut(s)	22, 746
BspANI	GGCC	6 cut(s)	710, 719, 749, 762, 803, 828
BspCNI	CTCAG	2 cut(s)	569, 835
BspFNI	CGCG	2 cut(s)	665, 746
BspLI	GGNNCC	2 cut(s)	610, 853
BspPI	GGATC	1 cut(s)	793
BspT107I	GGYRCC	2 cut(s)	608, 851
BsrFI	RCCGGY	1 cut(s)	854
BsrI	ACTGG	2 cut(s)	235, 905
BssAI	RCCGGY	1 cut(s)	854
BssECI	CCNNGG	3 cut(s)	720, 798, 804
BssMI	GATC	1 cut(s)	785
BssNI	GRCGYC	5 cut(s)	119, 191, 353, 422, 506
BssT1I	CCWWGG	1 cut(s)	798
Bst6I	CTCTTC	1 cut(s)	891
BstACI	GRCGYC	5 cut(s)	119, 191, 353, 422, 506
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	2 cut(s)	730, 918
BstDEI	CTNAG	5 cut(s)	556, 594, 843, 870, 885
BstF5I	GGATG	7 cut(s)	65, 146, 218, 299, 368, 449, 533
BstFNI	CGCG	2 cut(s)	665, 746
BstHHI	GCGC	3 cut(s)	665, 688, 746
BstKTI	GATC	1 cut(s)	788
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	1 cut(s)	785
BstMWI	GCNNNNNNNGC	3 cut(s)	683, 716, 725
BstSCI	CCNGG	1 cut(s)	719
BstSLI	GKGCMC	1 cut(s)	613
BstSNI	TACGTA	1 cut(s)	818
BstUI	CGCG	2 cut(s)	665, 746
BstV1I	GCAGC	5 cut(s)	270, 672, 695, 737, 907
BstV2I	GAAGAC	7 cut(s)	18, 33, 99, 252, 333, 402, 486
BsuRI	GGCC	6 cut(s)	710, 719, 749, 762, 803, 828
BtsCI	GGATG	7 cut(s)	65, 146, 218, 299, 368, 449, 533
BtsIMutI	CAGTG	2 cut(s)	228, 912
Cac8I	GCNNGC	2 cut(s)	730, 918
CfoI	GCGC	3 cut(s)	665, 688, 746
Cfr10I	RCCGGY	1 cut(s)	854
Cfr13I	GGNCC	1 cut(s)	628
CseI	GACGC	6 cut(s)	83, 180, 248, 342, 666, 994
CspAI	ACCGGT	1 cut(s)	854
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	2 cut(s)	614, 632
DdeI	CTNAG	5 cut(s)	556, 594, 843, 870, 885
DpnI	GATC	1 cut(s)	787
DpnII	GATC	1 cut(s)	785
EaeI	YGGCCR	4 cut(s)	717, 747, 760, 826
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
Eco105I	TACGTA	1 cut(s)	818
Eco130I	CCWWGG	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	628
Eco57I	CTGAAG	4 cut(s)	111, 264, 300, 498
EcoT14I	CCWWGG	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	2 cut(s)	617, 635
FaiI	YATR	5 cut(s)	615, 633, 792, 812, 968
FalI	AAGNNNNNCTT	2 cut(s)	971, 1003
FatI	CATG	2 cut(s)	613, 631
FblI	GTMKAC	4 cut(s)	122, 194, 356, 425
Fnu4HI	GCNGC	6 cut(s)	259, 661, 684, 726, 747, 921
FokI	GGATG	7 cut(s)	52, 133, 205, 286, 355, 436, 520
Fsp4HI	GCNGC	6 cut(s)	259, 661, 684, 726, 747, 921
FspBI	CTAG	5 cut(s)	381, 462, 645, 861, 1009
GlaI	GCGC	3 cut(s)	664, 687, 745
GluI	GCNGC	6 cut(s)	259, 661, 684, 726, 747, 921
HaeIII	GGCC	6 cut(s)	710, 719, 749, 762, 803, 828
HapII	CCGG	2 cut(s)	720, 855
HgaI	GACGC	6 cut(s)	83, 180, 248, 342, 666, 994
HhaI	GCGC	3 cut(s)	665, 688, 746
Hin1I	GRCGYC	5 cut(s)	119, 191, 353, 422, 506
Hin1II	CATG	2 cut(s)	617, 635
Hin6I	GCGC	3 cut(s)	663, 686, 744
HinP1I	GCGC	3 cut(s)	663, 686, 744
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	3 cut(s)	554, 839, 845
HpaII	CCGG	2 cut(s)	720, 855
Hpy166II	GTNNAC	6 cut(s)	123, 195, 357, 426, 510, 519
Hpy188III	TCNNGA	2 cut(s)	603, 988
Hpy8I	GTNNAC	6 cut(s)	123, 195, 357, 426, 510, 519
Hpy99I	CGWCG	1 cut(s)	604
HpyCH4IV	ACGT	6 cut(s)	119, 200, 340, 422, 506, 817
HpyCH4V	TGCA	1 cut(s)	617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	683, 716, 725
HpyF3I	CTNAG	5 cut(s)	556, 594, 843, 870, 885
HpySE526I	ACGT	6 cut(s)	119, 200, 340, 422, 506, 817
Hsp92I	GRCGYC	5 cut(s)	119, 191, 353, 422, 506
Hsp92II	CATG	2 cut(s)	617, 635
HspAI	GCGC	3 cut(s)	663, 686, 744
Kzo9I	GATC	1 cut(s)	785
LmnI	GCTCC	1 cut(s)	1002
LpnPI	CCDG	9 cut(s)	63, 216, 674, 733, 834, 842, 868, 918, 930
Lsp1109I	GCAGC	5 cut(s)	270, 672, 695, 737, 907
LweI	GCATC	3 cut(s)	76, 310, 463
MaeI	CTAG	5 cut(s)	381, 462, 645, 861, 1009
MaeII	ACGT	6 cut(s)	119, 200, 340, 422, 506, 817
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	1 cut(s)	787
MboI	GATC	1 cut(s)	785
MhlI	GDGCHC	1 cut(s)	613
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	1 cut(s)	584
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	2 cut(s)	548, 854
MmeI	TCCRAC	2 cut(s)	662, 980
MnlI	CCTC	5 cut(s)	301, 599, 799, 886, 931
Mox20I	TGGCCA	1 cut(s)	828
MroXI	GAANNNNTTC	1 cut(s)	983
MscI	TGGCCA	1 cut(s)	828
Msp20I	TGGCCA	1 cut(s)	828
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	2 cut(s)	720, 855
MspR9I	CCNGG	1 cut(s)	721
MvnI	CGCG	2 cut(s)	665, 746
MwoI	GCNNNNNNNGC	3 cut(s)	683, 716, 725
NciI	CCSGG	1 cut(s)	721
NdeII	GATC	1 cut(s)	785
NlaIII	CATG	2 cut(s)	617, 635
NlaIV	GGNNCC	2 cut(s)	610, 853
NmeAIII	GCCGAG	2 cut(s)	736, 829
NmuCI	GTSAC	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	3 cut(s)	246, 489, 765
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	1 cut(s)	839
PinAI	ACCGGT	1 cut(s)	854
PkrI	GCNGC	6 cut(s)	260, 662, 685, 727, 748, 922
PleI	GAGTC	2 cut(s)	548, 853
PpsI	GAGTC	2 cut(s)	548, 853
Ppu21I	YACGTR	1 cut(s)	818
PspN4I	GGNNCC	2 cut(s)	610, 853
PspPI	GGNCC	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	920
SatI	GCNGC	6 cut(s)	259, 661, 684, 726, 747, 921
Sau3AI	GATC	1 cut(s)	785
Sau96I	GGNCC	1 cut(s)	628
SchI	GAGTC	2 cut(s)	548, 854
ScrFI	CCNGG	1 cut(s)	721
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	3 cut(s)	76, 310, 463
SfiI	GGCCNNNNNGGCC	1 cut(s)	716
SgrAI	CRCCGGYG	1 cut(s)	854
SinI	GGWCC	1 cut(s)	628
SnaBI	TACGTA	1 cut(s)	818
SpeI	ACTAGT	2 cut(s)	461, 644
Sse9I	AATT	1 cut(s)	584
SsiI	CCGC	2 cut(s)	22, 746
SspMI	CTAG	5 cut(s)	381, 462, 645, 861, 1009
StyD4I	CCNGG	1 cut(s)	719
StyI	CCWWGG	1 cut(s)	798
TaiI	ACGT	6 cut(s)	122, 203, 343, 425, 509, 820
TaqI	TCGA	4 cut(s)	134, 287, 437, 768
TasI	AATT	1 cut(s)	584
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	1 cut(s)	839
TscAI	CASTG	2 cut(s)	235, 912
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	5 cut(s)	258, 660, 683, 725, 920
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	2 cut(s)	582, 983
TspRI	CASTG	2 cut(s)	235, 912
VpaK11BI	GGWCC	1 cut(s)	628
XmiI	GTMKAC	4 cut(s)	122, 194, 356, 425
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	5 cut(s)	381, 462, 645, 861, 1009
ZraI	GACGTC	3 cut(s)	120, 423, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.