Rh7BG332300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000749
Physical Location & Seq
Forward (+)
34466689 .. 34467964
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG332300.1

Sequence Viewer

Length: 519 bp
ATGTTTGCATGGGCCTGCGGCATGGTTCTTGGGCGATGGTCTGGCTCAAGGATGGAGGAAGGCGCGGTGGTGGCTGCATCTGGATCTGTGGCGTGGCTGAGGTTTGAGACCGGTCCAGCGTCGGATCTTAATCGGATTGGGGAGGTGTCTTGCGTCGGTCGGAAGGTGTGGCGGGATCTACGGTTTGCTGCTGCGGATCGGTGGATCGACGGTGGTCTTTTGTTGGTTGATTTCAGTTTCTGTCGTAGATCCATGGGTTTTGGATGTTTGGGTCTACGGTGGTGCGCGGGGTCAGGCAGGCAGGGGAGCGCTGGTCCTGGGGATCTGACGCTGGTGGTGGAGCGGCAGGAGTGGTGGGGAAGCGACGGTGCAGGTGCAGCTGGTGACGTGATTTGCCGGTGGGGCTCGTTTTGCCGGCGGCGGCCTTGGTGGAGCGCGGTGCTGCCTGGGTGGATCGTGGCGCTGAGGCTAACCCCTGCTCTTAATTCATACAAGTGTTTAAACAAAACAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.84

Weight (kDa)

8.93

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 362
AccBSI CCGCTC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 274
AccII CGCG 3 cut(s) 65, 287, 437
AciI CCGC 9 cut(s) 18, 65, 172, 194, 287, 343, 418, 421, 437
AclWI GGATC 8 cut(s) 91, 132, 183, 204, 212, 243, 330, 461
AfeI AGCGCT 1 cut(s) 310
AgeI ACCGGT 1 cut(s) 110
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 2 cut(s) 316, 445
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 8 cut(s) 91, 132, 183, 204, 212, 243, 330, 461
AlwNI CAGNNNCTG 1 cut(s) 240
Aor51HI AGCGCT 1 cut(s) 310
AoxI GGCC 2 cut(s) 12, 422
ApeKI GCWGC 5 cut(s) 74, 188, 191, 377, 442
AsiGI ACCGGT 1 cut(s) 110
AspLEI GCGC 5 cut(s) 65, 287, 311, 437, 463
AspS9I GGNCC 3 cut(s) 12, 113, 314
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 2 cut(s) 113, 314
BanII GRGCYC 1 cut(s) 407
BbvCI CCTCAGC 2 cut(s) 98, 464
BbvI GCAGC 5 cut(s) 61, 175, 178, 389, 429
BccI CCATC 2 cut(s) 30, 46
BciT130I CCWGG 2 cut(s) 318, 447
BcoDI GTCTC 1 cut(s) 101
BfoI RGCGCY 2 cut(s) 312, 464
BfuAI ACCTGC 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 402
BisI GCNGC 9 cut(s) 19, 75, 189, 192, 344, 378, 419, 422, 443
BlsI GCNGC 9 cut(s) 20, 76, 190, 193, 345, 379, 420, 423, 444
Bme1390I CCNGG 2 cut(s) 318, 447
Bme18I GGWCC 2 cut(s) 113, 314
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 12, 113, 314
BmrFI CCNGG 2 cut(s) 318, 447
BmsI GCATC 1 cut(s) 86
BoxI GACNNNNGTC 1 cut(s) 213
Bpu10I CCTNAGC 2 cut(s) 98, 464
BpuEI CTTGAG 1 cut(s) 31
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 4 cut(s) 252, 317, 425, 446
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bse118I RCCGGY 3 cut(s) 110, 396, 414
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 2 cut(s) 318, 447
BseDI CCNNGG 4 cut(s) 252, 317, 425, 446
BseGI GGATG 2 cut(s) 57, 269
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 2 cut(s) 89, 455
BseXI GCAGC 5 cut(s) 61, 175, 178, 389, 429
BsgI GTGCAG 2 cut(s) 390, 396
Bsh1236I CGCG 3 cut(s) 65, 287, 437
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 14, 424
BshTI ACCGGT 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 160
BsiSI CCGG 3 cut(s) 111, 397, 415
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 2 cut(s) 14, 424
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 8 cut(s) 83, 124, 175, 196, 204, 248, 322, 453
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 9 cut(s) 18, 65, 172, 194, 287, 343, 418, 421, 437
BspANI GGCC 2 cut(s) 14, 424
BspCNI CTCAG 2 cut(s) 90, 456
BspFNI CGCG 3 cut(s) 65, 287, 437
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 8 cut(s) 91, 132, 183, 204, 212, 243, 330, 461
BspTNI GGTCTC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 343
BsrFI RCCGGY 3 cut(s) 110, 396, 414
BssAI RCCGGY 3 cut(s) 110, 396, 414
BssECI CCNNGG 4 cut(s) 252, 317, 425, 446
BssMI GATC 8 cut(s) 83, 124, 175, 196, 204, 248, 322, 453
BssT1I CCWWGG 2 cut(s) 252, 425
Bst2UI CCWGG 2 cut(s) 318, 447
Bst4CI ACNGT 4 cut(s) 183, 212, 279, 368
BstC8I GCNNGC 3 cut(s) 16, 299, 416
BstDEI CTNAG 2 cut(s) 98, 464
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 57, 269
BstFNI CGCG 3 cut(s) 65, 287, 437
BstH2I RGCGCY 2 cut(s) 312, 464
BstHHI GCGC 5 cut(s) 65, 287, 311, 437, 463
BstKTI GATC 8 cut(s) 86, 127, 178, 199, 207, 251, 325, 456
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 8 cut(s) 83, 124, 175, 196, 204, 248, 322, 453
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 4 cut(s) 71, 377, 402, 411
BstNI CCWGG 2 cut(s) 318, 447
BstPAI GACNNNNGTC 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 316, 445
BstUI CGCG 3 cut(s) 65, 287, 437
BstV1I GCAGC 5 cut(s) 61, 175, 178, 389, 429
BstX2I RGATCY 5 cut(s) 83, 124, 175, 248, 322
BstYI RGATCY 5 cut(s) 83, 124, 175, 248, 322
BsuRI GGCC 2 cut(s) 14, 424
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 57, 269
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 16, 299, 416
CaiI CAGNNNCTG 1 cut(s) 240
CfoI GCGC 5 cut(s) 65, 287, 311, 437, 463
Cfr10I RCCGGY 3 cut(s) 110, 396, 414
Cfr13I GGNCC 3 cut(s) 12, 113, 314
CseI GACGC 3 cut(s) 108, 142, 337
CspAI ACCGGT 1 cut(s) 110
CviAII CATG 3 cut(s) 9, 22, 253
CviJI RGCY 8 cut(s) 14, 45, 74, 97, 380, 405, 424, 469
CviKI_1 RGCY 8 cut(s) 14, 45, 74, 97, 380, 405, 424, 469
DdeI CTNAG 2 cut(s) 98, 464
DpnI GATC 8 cut(s) 85, 126, 177, 198, 206, 250, 324, 455
DpnII GATC 8 cut(s) 83, 124, 175, 196, 204, 248, 322, 453
DraI TTTAAA 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 252, 425
Eco24I GRGCYC 1 cut(s) 407
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 113, 314
Eco47III AGCGCT 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 316, 445
EcoT14I CCWWGG 2 cut(s) 252, 425
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 2 cut(s) 252, 425
FaeI CATG 3 cut(s) 12, 25, 256
FaiI YATR 4 cut(s) 10, 23, 254, 490
FatI CATG 3 cut(s) 8, 21, 252
FauI CCCGC 2 cut(s) 165, 280
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 9 cut(s) 19, 75, 189, 192, 344, 378, 419, 422, 443
FokI GGATG 2 cut(s) 64, 276
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 9 cut(s) 19, 75, 189, 192, 344, 378, 419, 422, 443
GlaI GCGC 5 cut(s) 64, 286, 310, 436, 462
GluI GCNGC 9 cut(s) 19, 75, 189, 192, 344, 378, 419, 422, 443
HaeII RGCGCY 2 cut(s) 312, 464
HaeIII GGCC 2 cut(s) 14, 424
HapII CCGG 3 cut(s) 111, 397, 415
HgaI GACGC 3 cut(s) 108, 142, 337
HhaI GCGC 5 cut(s) 65, 287, 311, 437, 463
Hin1II CATG 3 cut(s) 12, 25, 256
Hin6I GCGC 5 cut(s) 63, 285, 309, 435, 461
HinP1I GCGC 5 cut(s) 63, 285, 309, 435, 461
HpaII CCGG 3 cut(s) 111, 397, 415
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 4 cut(s) 124, 135, 162, 327
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 275
Hpy99I CGWCG 4 cut(s) 124, 158, 212, 368
HpyAV CCTTC 2 cut(s) 53, 157
HpyCH4III ACNGT 4 cut(s) 183, 212, 279, 368
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 4 cut(s) 8, 77, 371, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 377, 402, 411
HpyF3I CTNAG 2 cut(s) 98, 464
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 3 cut(s) 12, 25, 256
HspAI GCGC 5 cut(s) 63, 285, 309, 435, 461
KroI GCCGGC 1 cut(s) 414
KroNI GCCGGC 1 cut(s) 416
Kzo9I GATC 8 cut(s) 83, 124, 175, 196, 204, 248, 322, 453
LmnI GCTCC 3 cut(s) 306, 340, 432
Lsp1109I GCAGC 5 cut(s) 61, 175, 178, 389, 429
LweI GCATC 1 cut(s) 86
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 383
MalI GATC 8 cut(s) 85, 126, 177, 198, 206, 250, 324, 455
MbiI CCGCTC 1 cut(s) 343
MboI GATC 8 cut(s) 83, 124, 175, 196, 204, 248, 322, 453
MflI RGATCY 5 cut(s) 83, 124, 175, 248, 322
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 1 cut(s) 484
MmeI TCCRAC 2 cut(s) 102, 140
MnlI CCTC 4 cut(s) 49, 93, 136, 459
MroNI GCCGGC 1 cut(s) 414
MseI TTAA 3 cut(s) 129, 483, 500
MslI CAYNNNNRTG 1 cut(s) 493
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 3 cut(s) 111, 397, 415
MspR9I CCNGG 2 cut(s) 318, 447
MssI GTTTAAAC 1 cut(s) 501
MvaI CCWGG 2 cut(s) 318, 447
MvnI CGCG 3 cut(s) 65, 287, 437
MwoI GCNNNNNNNGC 4 cut(s) 71, 377, 402, 411
NaeI GCCGGC 1 cut(s) 416
NcoI CCATGG 1 cut(s) 252
NdeII GATC 8 cut(s) 83, 124, 175, 196, 204, 248, 322, 453
NgoMIV GCCGGC 1 cut(s) 414
NlaIII CATG 3 cut(s) 12, 25, 256
NmuCI GTSAC 1 cut(s) 383
PaqCI CACCTGC 1 cut(s) 362
PdiI GCCGGC 1 cut(s) 416
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 9 cut(s) 20, 76, 190, 193, 345, 379, 420, 423, 444
PmeI GTTTAAAC 1 cut(s) 501
PshAI GACNNNNGTC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 316, 445
PspGI CCWGG 2 cut(s) 316, 445
PspPI GGNCC 3 cut(s) 12, 113, 314
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 5 cut(s) 83, 124, 175, 248, 322
PvuII CAGCTG 1 cut(s) 380
RseI CAYNNNNRTG 1 cut(s) 493
SaqAI TTAA 3 cut(s) 129, 483, 500
SatI GCNGC 9 cut(s) 19, 75, 189, 192, 344, 378, 419, 422, 443
Sau3AI GATC 8 cut(s) 83, 124, 175, 196, 204, 248, 322, 453
Sau96I GGNCC 3 cut(s) 12, 113, 314
ScrFI CCNGG 2 cut(s) 318, 447
SduI GDGCHC 1 cut(s) 407
SetI ASST 6 cut(s) 104, 147, 168, 376, 382, 390
SfaNI GCATC 1 cut(s) 86
SinI GGWCC 2 cut(s) 113, 314
SmiMI CAYNNNNRTG 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 1 cut(s) 484
SsiI CCGC 9 cut(s) 18, 65, 172, 194, 287, 343, 418, 421, 437
StyD4I CCNGG 2 cut(s) 316, 445
StyI CCWWGG 2 cut(s) 252, 425
TaaI ACNGT 4 cut(s) 183, 212, 279, 368
TaiI ACGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 207
TaqII GACCGA 1 cut(s) 146
TasI AATT 1 cut(s) 484
TauI GCSGC 4 cut(s) 21, 346, 421, 424
Tru1I TTAA 3 cut(s) 129, 483, 500
Tru9I TTAA 3 cut(s) 129, 483, 500
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 5 cut(s) 74, 188, 191, 377, 442
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 477
VpaK11BI GGWCC 2 cut(s) 113, 314
XmiI GTMKAC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.