Rroxscaffold_1G00072700

Ubiquitin associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000749
Physical Location & Seq
Reverse (-)
93745660 .. 93754538
8879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072700.1

Sequence Viewer

Length: 888 bp
ATGGGTGTTGATACTAATGACTCTCATGCAAAACCTTCTACTCATTCTGCTGTCACGTCTTGTAACTATTGTGAGCTTGCTCAGATTGCTGATCTGGAAGCAAGGTTTAAGTGCTCAACACAGGAGGTTGAAAGAGCTATTGTAGCCTGTGAGGGTGATATTCAGAAGGCTACTGAAAGCTTAAGAGCATCAAAGCAAGACCCACCTTCGATTTCACCTAAGCCAGAAGAAACTGATGGCCCTCTAGCAAACAGAGACACTAGGAGCGCCTTCAAAAGGGATGAAGCATTTGAGATGTTATTCGGTGGGTATACACAAGACGAGGCGACGTGGACCGGAGATCTTTTTTTCTACTCTATAACTGGGATTATCCTGCTTGAACGGATGAAGAGATGGAAGAGCTGCTTAGAACCATTTGAACACCGGGTGACGAGTTTTGGAGTGAGGGAGAGAACACGCCTCACGCGCGGAGACAAAACTAGAGGACATCGAGGGTGCTCTCTCCCTGCCGGACGCCGCCGGCGCCCTTGCCGCTACTTTCCGGTCCGGGAGGGGATGATAACGGGGGCTTGCGGTGTGGTTCTTGGGCAAAGGCCCGGCTCGGGGATGGAGGAAGGTGCGGTGGCTGCATCCGGATCCGAGGCGTGGCCGAGGATTGAGATCGGTCCGGCGTTGGATCTTAGTTTGATTGGGGAGGCATCTTGCGCCCGTCGGAAGGTGTGGCGGGATCTACGGTTCTTGTTGTGGATCGGTGGATCGACGGCGATCCTTTGTTGTTTGCATTCGGGTCCTATCGTAGATCCATGGGTTGTGGGTGTTTGGATCTCCGGAGGTGCGCGAGGAGAGGCAGATTGGGGAGCGCTGGTCACGGGGATCCGACGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

32.49

Weight (kDa)

8.49

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 522
AccI GTMKAC 1 cut(s) 311
AccII CGCG 3 cut(s) 466, 468, 838
AccIII TCCGGA 2 cut(s) 632, 827
AciI CCGC 7 cut(s) 468, 517, 532, 573, 620, 724, 883
AcoI YGGCCR 1 cut(s) 647
AcyI GRCGYC 2 cut(s) 514, 523
AdeI CACNNNGTG 1 cut(s) 427
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 5 cut(s) 276, 602, 603, 645, 715
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 4 cut(s) 131, 274, 380, 419
AjiI CACGTC 2 cut(s) 57, 330
AloI GAACNNNNNNTCC 2 cut(s) 719, 751
AluBI AGCT 4 cut(s) 76, 137, 180, 402
AluI AGCT 4 cut(s) 76, 137, 180, 402
Alw21I GWGCWC 2 cut(s) 116, 500
Alw26I GTCTC 2 cut(s) 249, 465
Ama87I CYCGRG 1 cut(s) 601
Aor13HI TCCGGA 2 cut(s) 632, 827
Aor51HI AGCGCT 1 cut(s) 861
AoxI GGCC 3 cut(s) 238, 593, 647
ApeKI GCWGC 2 cut(s) 402, 626
AspLEI GCGC 6 cut(s) 269, 468, 525, 707, 838, 862
AspS9I GGNCC 6 cut(s) 239, 333, 544, 594, 665, 788
AsuC2I CCSGG 3 cut(s) 425, 548, 597
AsuHPI GGTGA 3 cut(s) 167, 207, 439
AvaI CYCGRG 1 cut(s) 601
AvaII GGWCC 4 cut(s) 333, 544, 665, 788
BamHI GGATCC 2 cut(s) 635, 873
BanI GGYRCC 1 cut(s) 522
Bbv12I GWGCWC 2 cut(s) 116, 500
BbvI GCAGC 2 cut(s) 389, 613
BccI CCATC 3 cut(s) 230, 387, 601
BceAI ACGGC 1 cut(s) 777
BcnI CCSGG 3 cut(s) 425, 548, 597
BcoDI GTCTC 2 cut(s) 249, 465
BfaI CTAG 3 cut(s) 245, 261, 480
BfoI RGCGCY 3 cut(s) 270, 526, 863
BfrI CTTAAG 1 cut(s) 181
BglII AGATCT 1 cut(s) 340
BisI GCNGC 4 cut(s) 403, 517, 532, 627
BlsI GCNGC 4 cut(s) 404, 518, 533, 628
Bme1390I CCNGG 3 cut(s) 425, 548, 597
Bme18I GGWCC 4 cut(s) 333, 544, 665, 788
BmeT110I CYCGRG 1 cut(s) 601
BmgBI CACGTC 2 cut(s) 57, 330
BmgT120I GGNCC 6 cut(s) 239, 333, 544, 594, 665, 788
BmiI GGNNCC 4 cut(s) 524, 637, 789, 875
BmrFI CCNGG 3 cut(s) 425, 548, 597
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 3 cut(s) 197, 638, 707
BmuI ACTGGG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 219
BpuMI CCSGG 3 cut(s) 425, 548, 597
BsaBI GATNNNNATC 1 cut(s) 659
BsaHI GRCGYC 2 cut(s) 514, 523
BsaJI CCNNGG 3 cut(s) 639, 650, 803
BsaWI WCCGGW 4 cut(s) 335, 541, 632, 827
BsaXI ACNNNNNCTCC 2 cut(s) 849, 879
Bsc4I CCNNNNNNNGG 5 cut(s) 276, 602, 603, 645, 715
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 1 cut(s) 367
Bse8I GATNNNNATC 1 cut(s) 659
BseAI TCCGGA 2 cut(s) 632, 827
BseDI CCNNGG 3 cut(s) 639, 650, 803
BseGI GGATG 5 cut(s) 286, 390, 561, 612, 629
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 5 cut(s) 276, 602, 603, 645, 715
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 855
BseXI GCAGC 2 cut(s) 389, 613
Bsh1236I CGCG 3 cut(s) 466, 468, 838
BshFI GGCC 3 cut(s) 240, 595, 649
BshNI GGYRCC 1 cut(s) 522
BsiHKAI GWGCWC 2 cut(s) 116, 500
BsiHKCI CYCGRG 1 cut(s) 601
BslI CCNNNNNNNGG 5 cut(s) 276, 602, 603, 645, 715
BsmAI GTCTC 2 cut(s) 249, 465
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 3 cut(s) 240, 595, 649
BsoBI CYCGRG 1 cut(s) 601
Bsp1286I GDGCHC 2 cut(s) 116, 500
Bsp13I TCCGGA 2 cut(s) 632, 827
Bsp19I CCATGG 1 cut(s) 803
BspACI CCGC 7 cut(s) 468, 517, 532, 573, 620, 724, 883
BspANI GGCC 3 cut(s) 240, 595, 649
BspCNI CTCAG 1 cut(s) 94
BspEI TCCGGA 2 cut(s) 632, 827
BspFNI CGCG 3 cut(s) 466, 468, 838
BspLI GGNNCC 4 cut(s) 524, 637, 789, 875
BspQI GCTCTTC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 522
BspTI CTTAAG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 3 cut(s) 639, 650, 803
BssNAI GTATAC 1 cut(s) 312
BssNI GRCGYC 2 cut(s) 514, 523
BssT1I CCWWGG 1 cut(s) 803
Bst1107I GTATAC 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 735
Bst6I CTCTTC 2 cut(s) 383, 392
BstACI GRCGYC 2 cut(s) 514, 523
BstAFI CTTAAG 1 cut(s) 181
BstC8I GCNNGC 3 cut(s) 78, 521, 571
BstDEI CTNAG 4 cut(s) 81, 219, 406, 680
BstDSI CCRYGG 1 cut(s) 803
BstENI CCTNNNNNAGG 1 cut(s) 274
BstF5I GGATG 5 cut(s) 286, 390, 561, 612, 629
BstFNI CGCG 3 cut(s) 466, 468, 838
BstH2I RGCGCY 3 cut(s) 270, 526, 863
BstHHI GCGC 6 cut(s) 269, 468, 525, 707, 838, 862
BstMAI GTCTC 2 cut(s) 249, 465
BstMWI GCNNNNNNNGC 7 cut(s) 86, 143, 465, 522, 531, 626, 704
BstSCI CCNGG 3 cut(s) 423, 546, 595
BstUI CGCG 3 cut(s) 466, 468, 838
BstV1I GCAGC 2 cut(s) 389, 613
BstX2I RGATCY 7 cut(s) 340, 635, 676, 727, 799, 822, 873
BstYI RGATCY 7 cut(s) 340, 635, 676, 727, 799, 822, 873
BstZ17I GTATAC 1 cut(s) 312
BsuRI GGCC 3 cut(s) 240, 595, 649
BtgI CCRYGG 1 cut(s) 803
BtrI CACGTC 2 cut(s) 57, 330
BtsCI GGATG 5 cut(s) 286, 390, 561, 612, 629
Cac8I GCNNGC 3 cut(s) 78, 521, 571
CfoI GCGC 6 cut(s) 269, 468, 525, 707, 838, 862
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 6 cut(s) 239, 333, 544, 594, 665, 788
CpoI CGGWCCG 2 cut(s) 544, 665
CseI GACGC 1 cut(s) 522
CspI CGGWCCG 2 cut(s) 544, 665
CviAII CATG 2 cut(s) 26, 804
DdeI CTNAG 4 cut(s) 81, 219, 406, 680
DinI GGCGCC 1 cut(s) 524
DraIII CACNNNGTG 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 383, 392
EarI CTCTTC 2 cut(s) 383, 392
Eco130I CCWWGG 1 cut(s) 803
Eco47I GGWCC 4 cut(s) 333, 544, 665, 788
Eco47III AGCGCT 1 cut(s) 861
Eco88I CYCGRG 1 cut(s) 601
EcoNI CCTNNNNNAGG 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 788
EcoT14I CCWWGG 1 cut(s) 803
EgeI GGCGCC 1 cut(s) 524
EheI GGCGCC 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 803
FaeI CATG 2 cut(s) 29, 807
FaiI YATR 4 cut(s) 27, 312, 359, 805
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 2 cut(s) 25, 803
FauI CCCGC 1 cut(s) 717
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 4 cut(s) 403, 517, 532, 627
FokI GGATG 5 cut(s) 293, 397, 568, 616, 619
Fsp4HI GCNGC 4 cut(s) 403, 517, 532, 627
FspBI CTAG 3 cut(s) 245, 261, 480
GlaI GCGC 6 cut(s) 268, 467, 524, 706, 837, 861
GluI GCNGC 4 cut(s) 403, 517, 532, 627
HaeII RGCGCY 3 cut(s) 270, 526, 863
HaeIII GGCC 3 cut(s) 240, 595, 649
HgaI GACGC 1 cut(s) 522
HhaI GCGC 6 cut(s) 269, 468, 525, 707, 838, 862
Hin1I GRCGYC 2 cut(s) 514, 523
Hin1II CATG 2 cut(s) 29, 807
Hin6I GCGC 6 cut(s) 267, 466, 523, 705, 836, 860
HinP1I GCGC 6 cut(s) 267, 466, 523, 705, 836, 860
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 1 cut(s) 20
HphI GGTGA 3 cut(s) 167, 207, 439
Hpy166II GTNNAC 2 cut(s) 312, 333
Hpy188I TCNGA 5 cut(s) 84, 165, 640, 714, 878
Hpy188III TCNNGA 3 cut(s) 95, 633, 828
Hpy8I GTNNAC 2 cut(s) 312, 333
Hpy99I CGWCG 4 cut(s) 331, 714, 763, 882
HpyAV CCTTC 6 cut(s) 45, 160, 216, 280, 608, 709
HpyCH4III ACNGT 1 cut(s) 735
HpyCH4IV ACGT 2 cut(s) 56, 329
HpyCH4V TGCA 3 cut(s) 29, 629, 781
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 143, 465, 522, 531, 626, 704
HpyF3I CTNAG 4 cut(s) 81, 219, 406, 680
HpySE526I ACGT 2 cut(s) 56, 329
Hsp92I GRCGYC 2 cut(s) 514, 523
Hsp92II CATG 2 cut(s) 29, 807
HspAI GCGC 6 cut(s) 267, 466, 523, 705, 836, 860
KasI GGCGCC 1 cut(s) 522
Kpn2I TCCGGA 2 cut(s) 632, 827
KroI GCCGGC 1 cut(s) 519
KroNI GCCGGC 1 cut(s) 521
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 2 cut(s) 264, 857
Lsp1109I GCAGC 2 cut(s) 389, 613
LweI GCATC 3 cut(s) 197, 638, 707
MaeI CTAG 3 cut(s) 245, 261, 480
MaeII ACGT 2 cut(s) 56, 329
MaeIII GTNAC 4 cut(s) 52, 62, 427, 865
MboII GAAGA 3 cut(s) 239, 400, 409
MflI RGATCY 7 cut(s) 340, 635, 676, 727, 799, 822, 873
MhlI GDGCHC 2 cut(s) 116, 500
Mly113I GGCGCC 1 cut(s) 523
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 654, 692
MreI CGCCGGCG 1 cut(s) 519
MroI TCCGGA 2 cut(s) 632, 827
MroNI GCCGGC 1 cut(s) 519
MseI TTAA 2 cut(s) 108, 182
MspCI CTTAAG 1 cut(s) 181
MspR9I CCNGG 3 cut(s) 425, 548, 597
Mva1269I GAATGC 1 cut(s) 781
MvnI CGCG 3 cut(s) 466, 468, 838
MwoI GCNNNNNNNGC 7 cut(s) 86, 143, 465, 522, 531, 626, 704
NaeI GCCGGC 1 cut(s) 521
NarI GGCGCC 1 cut(s) 523
NciI CCSGG 3 cut(s) 425, 548, 597
NcoI CCATGG 1 cut(s) 803
NgoMIV GCCGGC 1 cut(s) 519
NlaIII CATG 2 cut(s) 29, 807
NlaIV GGNNCC 4 cut(s) 524, 637, 789, 875
NmeAIII GCCGAG 1 cut(s) 675
NmuCI GTSAC 3 cut(s) 52, 427, 865
PciSI GCTCTTC 1 cut(s) 392
PctI GAATGC 1 cut(s) 781
PdiI GCCGGC 1 cut(s) 521
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 4 cut(s) 404, 518, 533, 628
PleI GAGTC 1 cut(s) 14
PluTI GGCGCC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 788
Psp5II RGGWCCY 1 cut(s) 788
PspN4I GGNNCC 4 cut(s) 524, 637, 789, 875
PspPI GGNCC 6 cut(s) 239, 333, 544, 594, 665, 788
PspPPI RGGWCCY 1 cut(s) 788
PsuI RGATCY 7 cut(s) 340, 635, 676, 727, 799, 822, 873
Rsr2I CGGWCCG 2 cut(s) 544, 665
RsrII CGGWCCG 2 cut(s) 544, 665
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 2 cut(s) 108, 182
SatI GCNGC 4 cut(s) 403, 517, 532, 627
Sau96I GGNCC 6 cut(s) 239, 333, 544, 594, 665, 788
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 425, 548, 597
SduI GDGCHC 2 cut(s) 116, 500
SfaNI GCATC 3 cut(s) 197, 638, 707
SfoI GGCGCC 1 cut(s) 524
SgrAI CRCCGGYG 1 cut(s) 519
SinI GGWCC 4 cut(s) 333, 544, 665, 788
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SsiI CCGC 7 cut(s) 468, 517, 532, 573, 620, 724, 883
SspDI GGCGCC 1 cut(s) 522
SspMI CTAG 3 cut(s) 245, 261, 480
StyD4I CCNGG 3 cut(s) 423, 546, 595
StyI CCWWGG 1 cut(s) 803
TaaI ACNGT 1 cut(s) 735
TaiI ACGT 2 cut(s) 59, 332
TaqI TCGA 3 cut(s) 209, 490, 758
TaqII GACCGA 1 cut(s) 653
TauI GCSGC 2 cut(s) 519, 534
Tru1I TTAA 2 cut(s) 108, 182
Tru9I TTAA 2 cut(s) 108, 182
TseFI GTSAC 3 cut(s) 52, 427, 865
TseI GCWGC 2 cut(s) 402, 626
Tsp45I GTSAC 3 cut(s) 52, 427, 865
TspDTI ATGAA 2 cut(s) 297, 401
TspGWI ACGGA 1 cut(s) 397
Vha464I CTTAAG 1 cut(s) 181
VpaK11BI GGWCC 4 cut(s) 333, 544, 665, 788
XagI CCTNNNNNAGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 311
XspI CTAG 3 cut(s) 245, 261, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.