Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

1039088 .. 1040184

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATTTCTTCACCGATCAAGTAAAGAAGAAATTCTCCGACAAGAAACCGGAGAGCTCTGATCCGGAGCCAAACCACAACAAAAACAAACCCGGTCACACGGAGCCAACAACACATAAACCCGGTCACGGCGAGCCAACAACACATAAACCGGTCTCCAACACCGATCCAACAACACACAGACCGGCTACGAACGCTGAGCTCATGGCTAGTGCCAAGATCGTAGCCGAAGCTGCTCAAGCCGCTGCTCGTCACGAGTCAGACAAGCTTGACAAAGCCAAAGTCGCCGGAGCCACCGCTGATATCTTAGACGCCGCTTCTAGATACGGTAAGCTCGATGAAAAGAGCGGTGTTGGTCAGTACCTTGAAAAGGCTGAACAATATCTTCACAAGTACGAAACTTCCCACTCTCACTCCTCCACCGGTGGAACTGGAAGCCACGGTAATGTTGGAGGACACGGTGGTGGAGCTGGAGCACCGGCGGCTAAGAAAGAAGATGAGAAGTCCGGAGGTGGTCATGGGTTTGGAGATTATGCTAAGATGGCTCAAGGTTTTATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

19.7

Weight (kDa)

7.25

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	348
AccIII	TCCGGA	2 cut(s)	64, 506
AciI	CCGC	5 cut(s)	243, 297, 315, 348, 482
AclWI	GGATC	2 cut(s)	56, 161
AcsI	RAATTY	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	2 cut(s)	362, 395
AfiI	CCNNNNNNNGG	2 cut(s)	128, 370
AgeI	ACCGGT	2 cut(s)	151, 422
AgsI	TTSAA	1 cut(s)	368
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	6 cut(s)	57, 202, 233, 268, 334, 470
AluI	AGCT	6 cut(s)	57, 202, 233, 268, 334, 470
Alw21I	GWGCWC	3 cut(s)	59, 204, 478
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	56, 161
Aor13HI	TCCGGA	2 cut(s)	64, 506
ApeKI	GCWGC	2 cut(s)	233, 245
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AsiGI	ACCGGT	2 cut(s)	151, 422
Asp700I	GAANNNNTTC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	93, 123
AsuHPI	GGTGA	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	59, 204
BauI	CACGAG	1 cut(s)	254
Bbv12I	GWGCWC	3 cut(s)	59, 204, 478
BbvI	GCAGC	2 cut(s)	220, 232
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	145
BcnI	CCSGG	2 cut(s)	93, 123
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	210, 321
BisI	GCNGC	5 cut(s)	234, 243, 246, 315, 483
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	5 cut(s)	235, 244, 247, 316, 484
Bme1390I	CCNGG	2 cut(s)	93, 123
BmiI	GGNNCC	3 cut(s)	69, 105, 292
BmrFI	CCNGG	2 cut(s)	93, 123
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	222, 531
BpuMI	CCSGG	2 cut(s)	93, 123
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	439
BsaWI	WCCGGW	5 cut(s)	49, 64, 151, 422, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 370
Bse118I	RCCGGY	4 cut(s)	151, 184, 422, 478
Bse1I	ACTGG	1 cut(s)	436
BseAI	TCCGGA	2 cut(s)	64, 506
BseDI	CCNNGG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	128, 370
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	220, 232
BshTI	ACCGGT	2 cut(s)	151, 422
BsiHKAI	GWGCWC	3 cut(s)	59, 204, 478
BslI	CCNNNNNNNGG	2 cut(s)	128, 370
BsmAI	GTCTC	1 cut(s)	160
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	59, 204, 478
Bsp13I	TCCGGA	2 cut(s)	64, 506
Bsp143I	GATC	4 cut(s)	16, 61, 166, 219
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	5 cut(s)	243, 297, 315, 348, 482
BspCNI	CTCAG	1 cut(s)	190
BspEI	TCCGGA	2 cut(s)	64, 506
BspLI	GGNNCC	3 cut(s)	69, 105, 292
BspPI	GGATC	2 cut(s)	56, 161
BspTNI	GGTCTC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	348
BsrFI	RCCGGY	4 cut(s)	151, 184, 422, 478
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	4 cut(s)	151, 184, 422, 478
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	4 cut(s)	16, 61, 166, 219
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	329, 443, 461
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	4 cut(s)	198, 307, 486, 537
BstDSI	CCRYGG	1 cut(s)	439
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstKTI	GATC	4 cut(s)	19, 64, 169, 222
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	4 cut(s)	16, 61, 166, 219
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 233, 239, 242, 284, 482, 542
BstSCI	CCNGG	2 cut(s)	91, 121
BstV1I	GCAGC	2 cut(s)	220, 232
BtgI	CCRYGG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	134
Cfr10I	RCCGGY	4 cut(s)	151, 184, 422, 478
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	361, 394
CspAI	ACCGGT	2 cut(s)	151, 422
CviAII	CATG	2 cut(s)	205, 518
CviQI	GTAC	2 cut(s)	361, 394
DdeI	CTNAG	4 cut(s)	198, 307, 486, 537
DpnI	GATC	4 cut(s)	18, 63, 168, 221
DpnII	GATC	4 cut(s)	16, 61, 166, 219
Ecl136II	GAGCTC	2 cut(s)	57, 202
Eco24I	GRGCYC	2 cut(s)	59, 204
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	304
Eco53kI	GAGCTC	2 cut(s)	57, 202
EcoICRI	GAGCTC	2 cut(s)	57, 202
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	59, 204
FaeI	CATG	2 cut(s)	208, 521
FaiI	YATR	6 cut(s)	117, 147, 206, 519, 534, 557
FatI	CATG	2 cut(s)	204, 517
Fnu4HI	GCNGC	5 cut(s)	234, 243, 246, 315, 483
FriOI	GRGCYC	2 cut(s)	59, 204
Fsp4HI	GCNGC	5 cut(s)	234, 243, 246, 315, 483
FspBI	CTAG	2 cut(s)	210, 321
GluI	GCNGC	5 cut(s)	234, 243, 246, 315, 483
GsuI	CTGGAG	1 cut(s)	492
HgaI	GACGC	1 cut(s)	320
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	208, 521
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	1 cut(s)	257
HphI	GGTGA	1 cut(s)	4
Hpy188I	TCNGA	3 cut(s)	40, 61, 262
Hpy188III	TCNNGA	4 cut(s)	65, 254, 321, 507
HpyCH4III	ACNGT	3 cut(s)	329, 443, 461
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 233, 239, 242, 284, 482, 542
HpyF3I	CTNAG	4 cut(s)	198, 307, 486, 537
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	208, 521
Kpn2I	TCCGGA	2 cut(s)	64, 506
Kzo9I	GATC	4 cut(s)	16, 61, 166, 219
LmnI	GCTCC	5 cut(s)	67, 103, 290, 467, 473
Lsp1109I	GCAGC	2 cut(s)	220, 232
MaeI	CTAG	2 cut(s)	210, 321
MaeIII	GTNAC	3 cut(s)	95, 125, 251
MalI	GATC	4 cut(s)	18, 63, 168, 221
MbiI	CCGCTC	1 cut(s)	348
MboI	GATC	4 cut(s)	16, 61, 166, 219
MboII	GAAGA	3 cut(s)	40, 377, 506
MhlI	GDGCHC	3 cut(s)	59, 204, 478
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	4 cut(s)	63, 183, 194, 430
MnlI	CCTC	3 cut(s)	427, 446, 503
MroI	TCCGGA	2 cut(s)	64, 506
MroXI	GAANNNNTTC	1 cut(s)	32
MslI	CAYNNNNRTG	2 cut(s)	444, 462
MspA1I	CMGCKG	2 cut(s)	245, 299
MspR9I	CCNGG	2 cut(s)	93, 123
MwoI	GCNNNNNNNGC	7 cut(s)	194, 233, 239, 242, 284, 482, 542
NciI	CCSGG	2 cut(s)	93, 123
NdeII	GATC	4 cut(s)	16, 61, 166, 219
NlaIII	CATG	2 cut(s)	208, 521
NlaIV	GGNNCC	3 cut(s)	69, 105, 292
NmuCI	GTSAC	3 cut(s)	95, 125, 251
OliI	CACNNNNGTG	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	32
PinAI	ACCGGT	2 cut(s)	151, 422
PkrI	GCNGC	5 cut(s)	235, 244, 247, 316, 484
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp124BI	GAGCTC	2 cut(s)	59, 204
PspN4I	GGNNCC	3 cut(s)	69, 105, 292
RsaI	GTAC	2 cut(s)	362, 395
RsaNI	GTAC	2 cut(s)	361, 394
RseI	CAYNNNNRTG	2 cut(s)	444, 462
SacI	GAGCTC	2 cut(s)	59, 204
SatI	GCNGC	5 cut(s)	234, 243, 246, 315, 483
Sau3AI	GATC	4 cut(s)	16, 61, 166, 219
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	93, 123
SduI	GDGCHC	3 cut(s)	59, 204, 478
SetI	ASST	9 cut(s)	59, 204, 235, 270, 336, 366, 472, 514, 553
SgrAI	CRCCGGYG	2 cut(s)	422, 478
SmiMI	CAYNNNNRTG	2 cut(s)	444, 462
SmlI	CTYRAG	2 cut(s)	237, 546
SmoI	CTYRAG	2 cut(s)	237, 546
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	5 cut(s)	243, 297, 315, 348, 482
SspMI	CTAG	2 cut(s)	210, 321
SstI	GAGCTC	2 cut(s)	59, 204
StyD4I	CCNGG	2 cut(s)	91, 121
TaaI	ACNGT	3 cut(s)	329, 443, 461
TaqI	TCGA	1 cut(s)	336
TasI	AATT	1 cut(s)	32
TauI	GCSGC	3 cut(s)	245, 317, 485
TseFI	GTSAC	3 cut(s)	95, 125, 251
TseI	GCWGC	2 cut(s)	233, 245
Tsp45I	GTSAC	3 cut(s)	95, 125, 251
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	32
XbaI	TCTAGA	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	210, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.