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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 97 |
| AccBSI | CCGCTC | 4 cut(s) | 452, 527, 1093, 1476 |
| AccI | GTMKAC | 1 cut(s) | 108 |
| AccII | CGCG | 3 cut(s) | 165, 924, 971 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcoI | YGGCCR | 2 cut(s) | 835, 1381 |
| AcuI | CTGAAG | 3 cut(s) | 42, 1413, 1571 |
| AfaI | GTAC | 4 cut(s) | 104, 344, 1276, 1301 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 95, 152, 941, 1187, 1345 |
| AflIII | ACRYGT | 1 cut(s) | 1117 |
| AgsI | TTSAA | 5 cut(s) | 474, 549, 639, 795, 1467 |
| AjnI | CCWGG | 1 cut(s) | 847 |
| Alw21I | GWGCWC | 1 cut(s) | 49 |
| Alw26I | GTCTC | 4 cut(s) | 186, 419, 494, 584 |
| AlwI | GGATC | 1 cut(s) | 12 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1436 |
| Ama87I | CYCGRG | 2 cut(s) | 940, 1013 |
| AoxI | GGCC | 5 cut(s) | 835, 861, 1381, 1402, 1483 |
| ApaI | GGGCCC | 1 cut(s) | 1487 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 700, 732 |
| AspLEI | GCGC | 2 cut(s) | 971, 1226 |
| AspS9I | GGNCC | 3 cut(s) | 1403, 1483, 1484 |
| AsuC2I | CCSGG | 1 cut(s) | 952 |
| AsuHPI | GGTGA | 5 cut(s) | 215, 1184, 1207, 1403, 1526 |
| AvaI | CYCGRG | 2 cut(s) | 940, 1013 |
| BaeGI | GKGCMC | 2 cut(s) | 1106, 1487 |
| BalI | TGGCCA | 1 cut(s) | 837 |
| BanII | GRGCYC | 2 cut(s) | 49, 1487 |
| Bbv12I | GWGCWC | 1 cut(s) | 49 |
| BbvCI | CCTCAGC | 2 cut(s) | 1254, 1340 |
| BccI | CCATC | 5 cut(s) | 980, 1048, 1189, 1517, 1549 |
| BceAI | ACGGC | 9 cut(s) | 169, 361, 436, 511, 601, 642, 676, 757, 1318 |
| BciT130I | CCWGG | 1 cut(s) | 849 |
| BclI | TGATCA | 3 cut(s) | 820, 910, 1003 |
| BcnI | CCSGG | 1 cut(s) | 952 |
| BcoDI | GTCTC | 4 cut(s) | 186, 419, 494, 584 |
| BfaI | CTAG | 2 cut(s) | 936, 1283 |
| BfoI | RGCGCY | 1 cut(s) | 1227 |
| BfuAI | ACCTGC | 1 cut(s) | 97 |
| Bme1390I | CCNGG | 2 cut(s) | 849, 952 |
| BmeT110I | CYCGRG | 2 cut(s) | 940, 1013 |
| BmgT120I | GGNCC | 3 cut(s) | 1403, 1483, 1484 |
| BmiI | GGNNCC | 3 cut(s) | 1405, 1484, 1485 |
| BmrFI | CCNGG | 2 cut(s) | 849, 952 |
| BmsI | GCATC | 2 cut(s) | 19, 1335 |
| BpmI | CTGGAG | 1 cut(s) | 114 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1254, 1340, 1560 |
| BpuMI | CCSGG | 1 cut(s) | 952 |
| BsaAI | YACGTR | 1 cut(s) | 106 |
| BsaBI | GATNNNNATC | 1 cut(s) | 9 |
| BsaI | GGTCTC | 1 cut(s) | 186 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 90, 120, 1184, 1214 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 95, 152, 941, 1187, 1345 |
| Bse1I | ACTGG | 1 cut(s) | 1272 |
| Bse8I | GATNNNNATC | 1 cut(s) | 9 |
| BseBI | CCWGG | 1 cut(s) | 849 |
| BseGI | GGATG | 7 cut(s) | 832, 997, 1006, 1066, 1075, 1513, 1528 |
| BseJI | GATNNNNATC | 1 cut(s) | 9 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 95, 152, 941, 1187, 1345 |
| BseMII | CTCAG | 5 cut(s) | 879, 1245, 1354, 1428, 1574 |
| BseNI | ACTGG | 1 cut(s) | 1272 |
| BseRI | GAGGAG | 4 cut(s) | 47, 111, 1170, 1454 |
| BseSI | GKGCMC | 2 cut(s) | 1106, 1487 |
| Bsh1236I | CGCG | 3 cut(s) | 165, 924, 971 |
| BshFI | GGCC | 5 cut(s) | 837, 863, 1383, 1404, 1485 |
| BsiHKAI | GWGCWC | 1 cut(s) | 49 |
| BsiHKCI | CYCGRG | 2 cut(s) | 940, 1013 |
| BsiSI | CCGG | 1 cut(s) | 951 |
| BsiWI | CGTACG | 1 cut(s) | 1299 |
| BslFI | GGGAC | 1 cut(s) | 1250 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 95, 152, 941, 1187, 1345 |
| BsmAI | GTCTC | 4 cut(s) | 186, 419, 494, 584 |
| BsmFI | GGGAC | 1 cut(s) | 1250 |
| BsnI | GGCC | 5 cut(s) | 837, 863, 1383, 1404, 1485 |
| Bso31I | GGTCTC | 1 cut(s) | 186 |
| BsoBI | CYCGRG | 2 cut(s) | 940, 1013 |
| Bsp120I | GGGCCC | 1 cut(s) | 1483 |
| Bsp1286I | GDGCHC | 3 cut(s) | 49, 1106, 1487 |
| Bsp143I | GATC | 5 cut(s) | 4, 187, 820, 910, 1003 |
| Bsp68I | TCGCGA | 2 cut(s) | 165, 924 |
| BspANI | GGCC | 5 cut(s) | 837, 863, 1383, 1404, 1485 |
| BspCNI | CTCAG | 5 cut(s) | 880, 1246, 1353, 1429, 1573 |
| BspFNI | CGCG | 3 cut(s) | 165, 924, 971 |
| BspLI | GGNNCC | 3 cut(s) | 1405, 1484, 1485 |
| BspMI | ACCTGC | 1 cut(s) | 97 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspTNI | GGTCTC | 1 cut(s) | 186 |
| BsrBI | CCGCTC | 4 cut(s) | 452, 527, 1093, 1476 |
| BsrI | ACTGG | 1 cut(s) | 1272 |
| BssMI | GATC | 5 cut(s) | 4, 187, 820, 910, 1003 |
| Bst2UI | CCWGG | 1 cut(s) | 849 |
| Bst6I | CTCTTC | 3 cut(s) | 162, 795, 1512 |
| BstBAI | YACGTR | 1 cut(s) | 106 |
| BstC8I | GCNNGC | 2 cut(s) | 665, 1222 |
| BstDEI | CTNAG | 5 cut(s) | 888, 1254, 1340, 1437, 1560 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 93, 1343 |
| BstF5I | GGATG | 7 cut(s) | 832, 997, 1006, 1066, 1075, 1513, 1528 |
| BstFNI | CGCG | 3 cut(s) | 165, 924, 971 |
| BstH2I | RGCGCY | 1 cut(s) | 1227 |
| BstHHI | GCGC | 2 cut(s) | 971, 1226 |
| BstKTI | GATC | 5 cut(s) | 7, 190, 823, 913, 1006 |
| BstMAI | GTCTC | 4 cut(s) | 186, 419, 494, 584 |
| BstMBI | GATC | 5 cut(s) | 4, 187, 820, 910, 1003 |
| BstNI | CCWGG | 1 cut(s) | 849 |
| BstNSI | RCATGY | 1 cut(s) | 1121 |
| BstSCI | CCNGG | 2 cut(s) | 847, 950 |
| BstSLI | GKGCMC | 2 cut(s) | 1106, 1487 |
| BstSNI | TACGTA | 1 cut(s) | 106 |
| BstUI | CGCG | 3 cut(s) | 165, 924, 971 |
| BsuRI | GGCC | 5 cut(s) | 837, 863, 1383, 1404, 1485 |
| BtgZI | GCGATG | 1 cut(s) | 905 |
| BtsCI | GGATG | 7 cut(s) | 832, 997, 1006, 1066, 1075, 1513, 1528 |
| BtsIMutI | CAGTG | 1 cut(s) | 1104 |
| BtuMI | TCGCGA | 2 cut(s) | 165, 924 |
| BveI | ACCTGC | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 2 cut(s) | 665, 1222 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1436 |
| CfoI | GCGC | 2 cut(s) | 971, 1226 |
| Cfr13I | GGNCC | 3 cut(s) | 1403, 1483, 1484 |
| Csp6I | GTAC | 4 cut(s) | 103, 343, 1275, 1300 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1354, 1389 |
| CviAII | CATG | 3 cut(s) | 14, 200, 1118 |
| CviQI | GTAC | 4 cut(s) | 103, 343, 1275, 1300 |
| DdeI | CTNAG | 5 cut(s) | 888, 1254, 1340, 1437, 1560 |
| DpnI | GATC | 5 cut(s) | 6, 189, 822, 912, 1005 |
| DpnII | GATC | 5 cut(s) | 4, 187, 820, 910, 1003 |
| EaeI | YGGCCR | 2 cut(s) | 835, 1381 |
| Eam1104I | CTCTTC | 3 cut(s) | 162, 795, 1512 |
| EarI | CTCTTC | 3 cut(s) | 162, 795, 1512 |
| EciI | GGCGGA | 1 cut(s) | 1151 |
| Ecl136II | GAGCTC | 1 cut(s) | 47 |
| Eco105I | TACGTA | 1 cut(s) | 106 |
| Eco24I | GRGCYC | 2 cut(s) | 49, 1487 |
| Eco31I | GGTCTC | 1 cut(s) | 186 |
| Eco53kI | GAGCTC | 1 cut(s) | 47 |
| Eco57I | CTGAAG | 3 cut(s) | 42, 1413, 1571 |
| Eco88I | CYCGRG | 2 cut(s) | 940, 1013 |
| EcoICRI | GAGCTC | 1 cut(s) | 47 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 93, 1343 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1483 |
| EcoRII | CCWGG | 1 cut(s) | 847 |
| EcoT38I | GRGCYC | 2 cut(s) | 49, 1487 |
| FaeI | CATG | 3 cut(s) | 17, 203, 1121 |
| FaqI | GGGAC | 1 cut(s) | 1250 |
| FatI | CATG | 3 cut(s) | 13, 199, 1117 |
| FauI | CCCGC | 3 cut(s) | 68, 1144, 1213 |
| FbaI | TGATCA | 3 cut(s) | 820, 910, 1003 |
| FblI | GTMKAC | 1 cut(s) | 108 |
| FokI | GGATG | 7 cut(s) | 839, 1004, 1013, 1073, 1082, 1520, 1535 |
| FriOI | GRGCYC | 2 cut(s) | 49, 1487 |
| FspBI | CTAG | 2 cut(s) | 936, 1283 |
| GlaI | GCGC | 2 cut(s) | 970, 1225 |
| GsuI | CTGGAG | 1 cut(s) | 114 |
| HaeII | RGCGCY | 1 cut(s) | 1227 |
| HaeIII | GGCC | 5 cut(s) | 837, 863, 1383, 1404, 1485 |
| HapII | CCGG | 1 cut(s) | 951 |
| HhaI | GCGC | 2 cut(s) | 971, 1226 |
| Hin1II | CATG | 3 cut(s) | 17, 203, 1121 |
| Hin6I | GCGC | 2 cut(s) | 969, 1224 |
| HinP1I | GCGC | 2 cut(s) | 969, 1224 |
| HincII | GTYRAC | 2 cut(s) | 56, 1050 |
| HindII | GTYRAC | 2 cut(s) | 56, 1050 |
| HindIII | AAGCTT | 1 cut(s) | 876 |
| HinfI | GANTC | 1 cut(s) | 1463 |
| HpaII | CCGG | 1 cut(s) | 951 |
| HphI | GGTGA | 5 cut(s) | 215, 1184, 1207, 1403, 1526 |
| Hpy166II | GTNNAC | 4 cut(s) | 56, 109, 1050, 1082 |
| Hpy188I | TCNGA | 6 cut(s) | 22, 456, 531, 889, 1438, 1551 |
| Hpy188III | TCNNGA | 9 cut(s) | 164, 191, 824, 914, 923, 1015, 1088, 1330, 1570 |
| Hpy8I | GTNNAC | 4 cut(s) | 56, 109, 1050, 1082 |
| Hpy99I | CGWCG | 4 cut(s) | 182, 328, 724, 1316 |
| HpyAV | CCTTC | 5 cut(s) | 35, 1156, 1316, 1382, 1567 |
| HpyCH4IV | ACGT | 1 cut(s) | 105 |
| HpyCH4V | TGCA | 1 cut(s) | 1263 |
| HpyF3I | CTNAG | 5 cut(s) | 888, 1254, 1340, 1437, 1560 |
| HpySE526I | ACGT | 1 cut(s) | 105 |
| Hsp92II | CATG | 3 cut(s) | 17, 203, 1121 |
| HspAI | GCGC | 2 cut(s) | 969, 1224 |
| Ksp22I | TGATCA | 3 cut(s) | 820, 910, 1003 |
| Kzo9I | GATC | 5 cut(s) | 4, 187, 820, 910, 1003 |
| LmnI | GCTCC | 4 cut(s) | 44, 457, 532, 1157 |
| LweI | GCATC | 2 cut(s) | 19, 1335 |
| MaeI | CTAG | 2 cut(s) | 936, 1283 |
| MaeII | ACGT | 1 cut(s) | 105 |
| MaeIII | GTNAC | 1 cut(s) | 1334 |
| MalI | GATC | 5 cut(s) | 6, 189, 822, 912, 1005 |
| MbiI | CCGCTC | 4 cut(s) | 452, 527, 1093, 1476 |
| MboI | GATC | 5 cut(s) | 4, 187, 820, 910, 1003 |
| MhlI | GDGCHC | 3 cut(s) | 49, 1106, 1487 |
| MlsI | TGGCCA | 1 cut(s) | 837 |
| MluNI | TGGCCA | 1 cut(s) | 837 |
| MmeI | TCCRAC | 1 cut(s) | 699 |
| Mox20I | TGGCCA | 1 cut(s) | 837 |
| MscI | TGGCCA | 1 cut(s) | 837 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1122 |
| Msp20I | TGGCCA | 1 cut(s) | 837 |
| MspA1I | CMGCKG | 3 cut(s) | 377, 617, 866 |
| MspI | CCGG | 1 cut(s) | 951 |
| MspR9I | CCNGG | 2 cut(s) | 849, 952 |
| MvaI | CCWGG | 1 cut(s) | 849 |
| MvnI | CGCG | 3 cut(s) | 165, 924, 971 |
| NciI | CCSGG | 1 cut(s) | 952 |
| NdeII | GATC | 5 cut(s) | 4, 187, 820, 910, 1003 |
| NlaIII | CATG | 3 cut(s) | 17, 203, 1121 |
| NlaIV | GGNNCC | 3 cut(s) | 1405, 1484, 1485 |
| NruI | TCGCGA | 2 cut(s) | 165, 924 |
| NspI | RCATGY | 1 cut(s) | 1121 |
| PaeR7I | CTCGAG | 1 cut(s) | 1013 |
| PciI | ACATGT | 1 cut(s) | 1117 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1308 |
| PfeI | GAWTC | 1 cut(s) | 1463 |
| Pfl23II | CGTACG | 1 cut(s) | 1299 |
| Ppu21I | YACGTR | 1 cut(s) | 106 |
| PscI | ACATGT | 1 cut(s) | 1117 |
| Psp124BI | GAGCTC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 1 cut(s) | 847 |
| PspGI | CCWGG | 1 cut(s) | 847 |
| PspLI | CGTACG | 1 cut(s) | 1299 |
| PspN4I | GGNNCC | 3 cut(s) | 1405, 1484, 1485 |
| PspOMI | GGGCCC | 1 cut(s) | 1483 |
| PspPI | GGNCC | 3 cut(s) | 1403, 1483, 1484 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1436 |
| RruI | TCGCGA | 2 cut(s) | 165, 924 |
| RsaI | GTAC | 4 cut(s) | 104, 344, 1276, 1301 |
| RsaNI | GTAC | 4 cut(s) | 103, 343, 1275, 1300 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1122 |
| SacI | GAGCTC | 1 cut(s) | 49 |
| Sau3AI | GATC | 5 cut(s) | 4, 187, 820, 910, 1003 |
| Sau96I | GGNCC | 3 cut(s) | 1403, 1483, 1484 |
| ScrFI | CCNGG | 2 cut(s) | 849, 952 |
| SduI | GDGCHC | 3 cut(s) | 49, 1106, 1487 |
| SfaNI | GCATC | 2 cut(s) | 19, 1335 |
| Sfr274I | CTCGAG | 1 cut(s) | 1013 |
| SlaI | CTCGAG | 1 cut(s) | 1013 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1122 |
| SmlI | CTYRAG | 1 cut(s) | 1013 |
| SmoI | CTYRAG | 1 cut(s) | 1013 |
| SnaBI | TACGTA | 1 cut(s) | 106 |
| SspMI | CTAG | 2 cut(s) | 936, 1283 |
| SstI | GAGCTC | 1 cut(s) | 49 |
| StyD4I | CCNGG | 2 cut(s) | 847, 950 |
| TaiI | ACGT | 1 cut(s) | 108 |
| TaqII | GACCGA | 1 cut(s) | 210 |
| TfiI | GAWTC | 1 cut(s) | 1463 |
| TscAI | CASTG | 1 cut(s) | 1111 |
| TspGWI | ACGGA | 4 cut(s) | 341, 566, 656, 737 |
| TspRI | CASTG | 1 cut(s) | 1111 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 93, 1343 |
| XceI | RCATGY | 1 cut(s) | 1121 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 845 |
| XhoI | CTCGAG | 1 cut(s) | 1013 |
| XmiI | GTMKAC | 1 cut(s) | 108 |
| XspI | CTAG | 2 cut(s) | 936, 1283 |