MD16G1064100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
4528468 .. 4530264
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1064100.v1.1.491

Sequence Viewer

Length: 1581 bp
ATGGATCGGCATCATGGTTCTGAAGATTACGAGGAGGAAGAAGGAGCTCATAGTCAACCCCGCCAGAGAAATATGACCAAATCGAAACCTGCTGGAGGAGGGTACGTAGACGAAGATGACCAAAGCCAACATCGGCAGATAAAACCAGCTTACGGCGGTTCTCGCGAAGAGTATGGCGACGAAGAAGATCGAGACCGACATGGTGAGAGAAAATCCAGCAAACCGAAATCATCAGCAGCTTACAGTTCGAGGGAAGATGAAGATGAATATGACGAGAGAAAACCCAACAAGCCGAAAGCCTCTGCGAAAGCAGCTTACGGTTCGACGGAAGATGAAGATGAGTACGGCGAGAGAAACCACAATAAGCCGAAAGCCGCTGCGAAAGCGGCTTACGGTTCGAGGGAAGATGAAGATGAATACGGCGAGACAAAACCCAACAAGCCGAAAGCCGCTCCGAAAACTGCTTACGGTTCAACGGGAGATGAAGATGAATACGGCGAGACAAAACCCAACAAACCGAAAGCCGCTCCGAAAACTGCTTACGGTTCAACGGAAGATGAAGATGAATACGATGAAGATGAATACGGCGAGACAAAACCCAACAAGCCGAAAGCCGCTGCGAAAACGGCTTACGGTTCAACGGAAGATGAAGATGAATACGGCGAGCGAAAATCCAACAAGCCGAAAACCGTTGCGAAAGCGGCGGCGACTTACGGTTCGACGGAAGATGAAGATGAATACGGCGAGAGGAAACCCAACAAGCCGAAAGCTGCTGTGAAAGCGGCTTACGGTTCAAGTGAAGAGTATGGGGGAGAAGATGATCAGGATGAATATGGCCAAAGAAAACCTGGCAAACCAAAGGCCGCTGCGAAACAAGCTTATGGTTCTGAGGGTTATGGAGATGAAGATGATCAGGAACATCGCGAAAAAAAACCTAGCTCGGGTTCTGCCGGGAAAGCAGCCAAAGGCGCGAAACCTGAAAAAGATGGGGATGTGGAGGATGATCAATACCTCGAGAAAAAAGCTGTTGCTGCTAAACCATCAAAGTCAACTTATGGGGATGAAAAGGATGAGCAGAGTGAACATCGTGAGCGGAAAGTGGGCACTGACGGGAAACATGTTGGTGGTGTGGGGGCGGAGAAAGCGAAAGCGGGAGGAGCGAAGGAGAAAGGTGAAAAGCCATCAATGGGGGAGGTGATGTCGAGTGCGAAGATTGTGGCGGGCGCTAATAAAGGGGACAAGTTCGACAAAGCTGAGGTTTGCAAGGCTGCCAGTACCATTCTAGGTGCTGCCTCTGCGTACGGCGGTTTCGACGACAAAGAAGGCATCGGGAGTTACCTCAGCAAGGCAGAGGATATGCTTCGCAAGTATGGTGGCGGCGGCCAAGAAGGTGAGGGAGGTGGCCCCAAAACTTCTGTTTCTCATTCTTCAGCTTCTGAGGAGAAGAAGAAGAAAAGTAATGATTCAAATGAGAGCGGTGGGGGCCCGAAGAAGCCCACTAAAAAGGATGACGGTGAAGAGGATGGTGGTGGTGGAGTTGGGGGCTATCTGAAGATGGCTCAGGGTTTCTGGAAGGGCTAA

Protein Analysis

527

Amino Acids

56.45

Weight (kDa)

5.17

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
AccBSI CCGCTC 4 cut(s) 452, 527, 1093, 1476
AccI GTMKAC 1 cut(s) 108
AccII CGCG 3 cut(s) 165, 924, 971
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 835, 1381
AcuI CTGAAG 3 cut(s) 42, 1413, 1571
AfaI GTAC 4 cut(s) 104, 344, 1276, 1301
AfiI CCNNNNNNNGG 5 cut(s) 95, 152, 941, 1187, 1345
AflIII ACRYGT 1 cut(s) 1117
AgsI TTSAA 5 cut(s) 474, 549, 639, 795, 1467
AjnI CCWGG 1 cut(s) 847
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 4 cut(s) 186, 419, 494, 584
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 1436
Ama87I CYCGRG 2 cut(s) 940, 1013
AoxI GGCC 5 cut(s) 835, 861, 1381, 1402, 1483
ApaI GGGCCC 1 cut(s) 1487
ArsI GACNNNNNNTTYG 2 cut(s) 700, 732
AspLEI GCGC 2 cut(s) 971, 1226
AspS9I GGNCC 3 cut(s) 1403, 1483, 1484
AsuC2I CCSGG 1 cut(s) 952
AsuHPI GGTGA 5 cut(s) 215, 1184, 1207, 1403, 1526
AvaI CYCGRG 2 cut(s) 940, 1013
BaeGI GKGCMC 2 cut(s) 1106, 1487
BalI TGGCCA 1 cut(s) 837
BanII GRGCYC 2 cut(s) 49, 1487
Bbv12I GWGCWC 1 cut(s) 49
BbvCI CCTCAGC 2 cut(s) 1254, 1340
BccI CCATC 5 cut(s) 980, 1048, 1189, 1517, 1549
BceAI ACGGC 9 cut(s) 169, 361, 436, 511, 601, 642, 676, 757, 1318
BciT130I CCWGG 1 cut(s) 849
BclI TGATCA 3 cut(s) 820, 910, 1003
BcnI CCSGG 1 cut(s) 952
BcoDI GTCTC 4 cut(s) 186, 419, 494, 584
BfaI CTAG 2 cut(s) 936, 1283
BfoI RGCGCY 1 cut(s) 1227
BfuAI ACCTGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 849, 952
BmeT110I CYCGRG 2 cut(s) 940, 1013
BmgT120I GGNCC 3 cut(s) 1403, 1483, 1484
BmiI GGNNCC 3 cut(s) 1405, 1484, 1485
BmrFI CCNGG 2 cut(s) 849, 952
BmsI GCATC 2 cut(s) 19, 1335
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 3 cut(s) 1254, 1340, 1560
BpuMI CCSGG 1 cut(s) 952
BsaAI YACGTR 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 186
BsaXI ACNNNNNCTCC 4 cut(s) 90, 120, 1184, 1214
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 152, 941, 1187, 1345
Bse1I ACTGG 1 cut(s) 1272
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 849
BseGI GGATG 7 cut(s) 832, 997, 1006, 1066, 1075, 1513, 1528
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 5 cut(s) 95, 152, 941, 1187, 1345
BseMII CTCAG 5 cut(s) 879, 1245, 1354, 1428, 1574
BseNI ACTGG 1 cut(s) 1272
BseRI GAGGAG 4 cut(s) 47, 111, 1170, 1454
BseSI GKGCMC 2 cut(s) 1106, 1487
Bsh1236I CGCG 3 cut(s) 165, 924, 971
BshFI GGCC 5 cut(s) 837, 863, 1383, 1404, 1485
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 2 cut(s) 940, 1013
BsiSI CCGG 1 cut(s) 951
BsiWI CGTACG 1 cut(s) 1299
BslFI GGGAC 1 cut(s) 1250
BslI CCNNNNNNNGG 5 cut(s) 95, 152, 941, 1187, 1345
BsmAI GTCTC 4 cut(s) 186, 419, 494, 584
BsmFI GGGAC 1 cut(s) 1250
BsnI GGCC 5 cut(s) 837, 863, 1383, 1404, 1485
Bso31I GGTCTC 1 cut(s) 186
BsoBI CYCGRG 2 cut(s) 940, 1013
Bsp120I GGGCCC 1 cut(s) 1483
Bsp1286I GDGCHC 3 cut(s) 49, 1106, 1487
Bsp143I GATC 5 cut(s) 4, 187, 820, 910, 1003
Bsp68I TCGCGA 2 cut(s) 165, 924
BspANI GGCC 5 cut(s) 837, 863, 1383, 1404, 1485
BspCNI CTCAG 5 cut(s) 880, 1246, 1353, 1429, 1573
BspFNI CGCG 3 cut(s) 165, 924, 971
BspLI GGNNCC 3 cut(s) 1405, 1484, 1485
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 186
BsrBI CCGCTC 4 cut(s) 452, 527, 1093, 1476
BsrI ACTGG 1 cut(s) 1272
BssMI GATC 5 cut(s) 4, 187, 820, 910, 1003
Bst2UI CCWGG 1 cut(s) 849
Bst6I CTCTTC 3 cut(s) 162, 795, 1512
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 665, 1222
BstDEI CTNAG 5 cut(s) 888, 1254, 1340, 1437, 1560
BstENI CCTNNNNNAGG 2 cut(s) 93, 1343
BstF5I GGATG 7 cut(s) 832, 997, 1006, 1066, 1075, 1513, 1528
BstFNI CGCG 3 cut(s) 165, 924, 971
BstH2I RGCGCY 1 cut(s) 1227
BstHHI GCGC 2 cut(s) 971, 1226
BstKTI GATC 5 cut(s) 7, 190, 823, 913, 1006
BstMAI GTCTC 4 cut(s) 186, 419, 494, 584
BstMBI GATC 5 cut(s) 4, 187, 820, 910, 1003
BstNI CCWGG 1 cut(s) 849
BstNSI RCATGY 1 cut(s) 1121
BstSCI CCNGG 2 cut(s) 847, 950
BstSLI GKGCMC 2 cut(s) 1106, 1487
BstSNI TACGTA 1 cut(s) 106
BstUI CGCG 3 cut(s) 165, 924, 971
BsuRI GGCC 5 cut(s) 837, 863, 1383, 1404, 1485
BtgZI GCGATG 1 cut(s) 905
BtsCI GGATG 7 cut(s) 832, 997, 1006, 1066, 1075, 1513, 1528
BtsIMutI CAGTG 1 cut(s) 1104
BtuMI TCGCGA 2 cut(s) 165, 924
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 665, 1222
CaiI CAGNNNCTG 1 cut(s) 1436
CfoI GCGC 2 cut(s) 971, 1226
Cfr13I GGNCC 3 cut(s) 1403, 1483, 1484
Csp6I GTAC 4 cut(s) 103, 343, 1275, 1300
CspCI CAANNNNNGTGG 2 cut(s) 1354, 1389
CviAII CATG 3 cut(s) 14, 200, 1118
CviQI GTAC 4 cut(s) 103, 343, 1275, 1300
DdeI CTNAG 5 cut(s) 888, 1254, 1340, 1437, 1560
DpnI GATC 5 cut(s) 6, 189, 822, 912, 1005
DpnII GATC 5 cut(s) 4, 187, 820, 910, 1003
EaeI YGGCCR 2 cut(s) 835, 1381
Eam1104I CTCTTC 3 cut(s) 162, 795, 1512
EarI CTCTTC 3 cut(s) 162, 795, 1512
EciI GGCGGA 1 cut(s) 1151
Ecl136II GAGCTC 1 cut(s) 47
Eco105I TACGTA 1 cut(s) 106
Eco24I GRGCYC 2 cut(s) 49, 1487
Eco31I GGTCTC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 47
Eco57I CTGAAG 3 cut(s) 42, 1413, 1571
Eco88I CYCGRG 2 cut(s) 940, 1013
EcoICRI GAGCTC 1 cut(s) 47
EcoNI CCTNNNNNAGG 2 cut(s) 93, 1343
EcoO109I RGGNCCY 1 cut(s) 1483
EcoRII CCWGG 1 cut(s) 847
EcoT38I GRGCYC 2 cut(s) 49, 1487
FaeI CATG 3 cut(s) 17, 203, 1121
FaqI GGGAC 1 cut(s) 1250
FatI CATG 3 cut(s) 13, 199, 1117
FauI CCCGC 3 cut(s) 68, 1144, 1213
FbaI TGATCA 3 cut(s) 820, 910, 1003
FblI GTMKAC 1 cut(s) 108
FokI GGATG 7 cut(s) 839, 1004, 1013, 1073, 1082, 1520, 1535
FriOI GRGCYC 2 cut(s) 49, 1487
FspBI CTAG 2 cut(s) 936, 1283
GlaI GCGC 2 cut(s) 970, 1225
GsuI CTGGAG 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 1227
HaeIII GGCC 5 cut(s) 837, 863, 1383, 1404, 1485
HapII CCGG 1 cut(s) 951
HhaI GCGC 2 cut(s) 971, 1226
Hin1II CATG 3 cut(s) 17, 203, 1121
Hin6I GCGC 2 cut(s) 969, 1224
HinP1I GCGC 2 cut(s) 969, 1224
HincII GTYRAC 2 cut(s) 56, 1050
HindII GTYRAC 2 cut(s) 56, 1050
HindIII AAGCTT 1 cut(s) 876
HinfI GANTC 1 cut(s) 1463
HpaII CCGG 1 cut(s) 951
HphI GGTGA 5 cut(s) 215, 1184, 1207, 1403, 1526
Hpy166II GTNNAC 4 cut(s) 56, 109, 1050, 1082
Hpy188I TCNGA 6 cut(s) 22, 456, 531, 889, 1438, 1551
Hpy188III TCNNGA 9 cut(s) 164, 191, 824, 914, 923, 1015, 1088, 1330, 1570
Hpy8I GTNNAC 4 cut(s) 56, 109, 1050, 1082
Hpy99I CGWCG 4 cut(s) 182, 328, 724, 1316
HpyAV CCTTC 5 cut(s) 35, 1156, 1316, 1382, 1567
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 1263
HpyF3I CTNAG 5 cut(s) 888, 1254, 1340, 1437, 1560
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 17, 203, 1121
HspAI GCGC 2 cut(s) 969, 1224
Ksp22I TGATCA 3 cut(s) 820, 910, 1003
Kzo9I GATC 5 cut(s) 4, 187, 820, 910, 1003
LmnI GCTCC 4 cut(s) 44, 457, 532, 1157
LweI GCATC 2 cut(s) 19, 1335
MaeI CTAG 2 cut(s) 936, 1283
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 1334
MalI GATC 5 cut(s) 6, 189, 822, 912, 1005
MbiI CCGCTC 4 cut(s) 452, 527, 1093, 1476
MboI GATC 5 cut(s) 4, 187, 820, 910, 1003
MhlI GDGCHC 3 cut(s) 49, 1106, 1487
MlsI TGGCCA 1 cut(s) 837
MluNI TGGCCA 1 cut(s) 837
MmeI TCCRAC 1 cut(s) 699
Mox20I TGGCCA 1 cut(s) 837
MscI TGGCCA 1 cut(s) 837
MslI CAYNNNNRTG 1 cut(s) 1122
Msp20I TGGCCA 1 cut(s) 837
MspA1I CMGCKG 3 cut(s) 377, 617, 866
MspI CCGG 1 cut(s) 951
MspR9I CCNGG 2 cut(s) 849, 952
MvaI CCWGG 1 cut(s) 849
MvnI CGCG 3 cut(s) 165, 924, 971
NciI CCSGG 1 cut(s) 952
NdeII GATC 5 cut(s) 4, 187, 820, 910, 1003
NlaIII CATG 3 cut(s) 17, 203, 1121
NlaIV GGNNCC 3 cut(s) 1405, 1484, 1485
NruI TCGCGA 2 cut(s) 165, 924
NspI RCATGY 1 cut(s) 1121
PaeR7I CTCGAG 1 cut(s) 1013
PciI ACATGT 1 cut(s) 1117
PcsI WCGNNNNNNNCGW 1 cut(s) 1308
PfeI GAWTC 1 cut(s) 1463
Pfl23II CGTACG 1 cut(s) 1299
Ppu21I YACGTR 1 cut(s) 106
PscI ACATGT 1 cut(s) 1117
Psp124BI GAGCTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 847
PspGI CCWGG 1 cut(s) 847
PspLI CGTACG 1 cut(s) 1299
PspN4I GGNNCC 3 cut(s) 1405, 1484, 1485
PspOMI GGGCCC 1 cut(s) 1483
PspPI GGNCC 3 cut(s) 1403, 1483, 1484
PstNI CAGNNNCTG 1 cut(s) 1436
RruI TCGCGA 2 cut(s) 165, 924
RsaI GTAC 4 cut(s) 104, 344, 1276, 1301
RsaNI GTAC 4 cut(s) 103, 343, 1275, 1300
RseI CAYNNNNRTG 1 cut(s) 1122
SacI GAGCTC 1 cut(s) 49
Sau3AI GATC 5 cut(s) 4, 187, 820, 910, 1003
Sau96I GGNCC 3 cut(s) 1403, 1483, 1484
ScrFI CCNGG 2 cut(s) 849, 952
SduI GDGCHC 3 cut(s) 49, 1106, 1487
SfaNI GCATC 2 cut(s) 19, 1335
Sfr274I CTCGAG 1 cut(s) 1013
SlaI CTCGAG 1 cut(s) 1013
SmiMI CAYNNNNRTG 1 cut(s) 1122
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
SnaBI TACGTA 1 cut(s) 106
SspMI CTAG 2 cut(s) 936, 1283
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 847, 950
TaiI ACGT 1 cut(s) 108
TaqII GACCGA 1 cut(s) 210
TfiI GAWTC 1 cut(s) 1463
TscAI CASTG 1 cut(s) 1111
TspGWI ACGGA 4 cut(s) 341, 566, 656, 737
TspRI CASTG 1 cut(s) 1111
XagI CCTNNNNNAGG 2 cut(s) 93, 1343
XceI RCATGY 1 cut(s) 1121
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XhoI CTCGAG 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 2 cut(s) 936, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.