Prupe.1G282500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
28518402 .. 28519577
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G282500.1

Sequence Viewer

Length: 1176 bp
ATGGATCGGCGCTCAGCTTATACTTCTGAGGATTATGAGGAAGATGAAGGTCAGAATCAGTATCGCGAGAGAAAACCCACCACTGGGACCAGACACAAAGCTGCTGCCAAACCAGCTTACACTTCTGCTGAAGATTATGAAGAAGAAGAACAAGAACAGGATCAATATCGCCAGAGAAAGCCCGCCACTGGGACCAGACCCAAAGCTGCTGCCAAACCAGCTTACACTTCTGCTGAAGATTATGAAGAAGAAGAACAAGACCAGGATCAATATCGCCAGAGAAAGCCCGCCACTGGGACCAGACCCAAAGCTTCTTCGAGACCCTCCACAGCTTACGCTTCTGCTGAAGAAAACGAAGATGAAGAGCGAGATCAGGAGGATCAATATCGCGAGAGAAAGCACACCACTGGGACCAAACCCAAAGCTGCGAAACCATCAGCTTATACTTCCGCTGATGATGAGGAAGATGACGAGGATCAATATGGCGGTAGAAAAGCTAGCAATGTGACCAAAGCCAAACCTGGAAAGCCATCCGCAGCTTACGGTTCTGCTGAAGATTATGAGGAGGAAGATCAGGACCAATACCGCGAGAAAAAAGCCGCCGCTGGGGCCAGAGGCTATGGCCATCCCGACAAGCATGCAGCTGCGGCGAAACCGGCGAAACCATCGACAGCTGAAGGTTATGAGGACGAAGAATATCAGGAGGATGAATATCGCGAGAGGAAAGCGCACACCGGGACGGCGACCGGGGCCCACCCGGACAAGCATGCATCTGGGCCGAAGCCAGCCAAAGGCGCGAAGCCATCGACCAGCGAGCTGATGTCCAGCGCCAAGATTATCGCCGGAGCAGCGAAAGGCGAGAAGGTGGACAAGGCCAAGGTCTGCGATGCTGCGAGCAATATTCTAGACGCTGCCTCTTCCTACGGCGGGCTCAATGAGAAAGAAGGCCTGGGCAGCTACGTCAGCAAGGCCGAGGATATGCTCCGTAAGTACGGCAGCGGCGGAAGCGGCGGAGGAAGCGGCGGCGATACTGCGGGAAAGGAAAAAAAGCAGCATGAATCGGGTAGCGGTGAGCATGAGACCAAGAAGAAACCCAGTAAAACTGATGAGGATGAGGGCGGATCTGGTGGATTTGGAGATTATTTTAAGATGGCTCAGGGTTTCTTAAAGGGTTGA

Protein Analysis

392

Amino Acids

42.46

Weight (kDa)

5.26

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 66, 390, 588, 717, 797
AclWI GGATC 6 cut(s) 12, 168, 273, 387, 483, 1129
AcoI YGGCCR 1 cut(s) 622
AcuI CTGAAG 5 cut(s) 150, 255, 366, 573, 696
AfaI GTAC 1 cut(s) 992
AfiI CCNNNNNNNGG 9 cut(s) 83, 84, 188, 189, 293, 294, 606, 791, 927
AjnI CCWGG 3 cut(s) 261, 520, 948
Alw26I GTCTC 2 cut(s) 313, 1073
AlwI GGATC 6 cut(s) 12, 168, 273, 387, 483, 1129
AoxI GGCC 7 cut(s) 609, 622, 750, 776, 873, 946, 969
ApaI GGGCCC 1 cut(s) 754
AspLEI GCGC 4 cut(s) 12, 730, 797, 830
AspS9I GGNCC 9 cut(s) 87, 192, 297, 411, 577, 609, 750, 751, 776
AsuC2I CCSGG 3 cut(s) 736, 748, 758
AsuHPI GGTGA 1 cut(s) 1082
AsuNHI GCTAGC 1 cut(s) 497
AvaII GGWCC 5 cut(s) 87, 192, 297, 411, 577
BaeGI GKGCMC 1 cut(s) 754
BalI TGGCCA 1 cut(s) 624
BanII GRGCYC 2 cut(s) 754, 933
BccI CCATC 6 cut(s) 442, 538, 633, 673, 811, 1144
BceAI ACGGC 3 cut(s) 756, 940, 1009
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BciT130I CCWGG 3 cut(s) 263, 522, 950
BcnI CCSGG 3 cut(s) 736, 748, 758
BcoDI GTCTC 2 cut(s) 313, 1073
BfaI CTAG 2 cut(s) 498, 905
BfoI RGCGCY 2 cut(s) 13, 831
BglI GCCNNNNNGGC 1 cut(s) 608
BlpI GCTNAGC 1 cut(s) 13
Bme1390I CCNGG 6 cut(s) 263, 522, 736, 748, 758, 950
Bme18I GGWCC 5 cut(s) 87, 192, 297, 411, 577
BmgT120I GGNCC 9 cut(s) 87, 192, 297, 411, 577, 609, 750, 751, 776
BmiI GGNNCC 7 cut(s) 88, 193, 298, 412, 610, 751, 752
BmrFI CCNGG 6 cut(s) 263, 522, 736, 748, 758, 950
BmrI ACTGGG 5 cut(s) 93, 198, 303, 417, 1089
BmsI GCATC 2 cut(s) 779, 877
BmtI GCTAGC 1 cut(s) 501
BmuI ACTGGG 5 cut(s) 93, 198, 303, 417, 1089
Bpu10I CCTNAGC 1 cut(s) 1155
Bpu1102I GCTNAGC 1 cut(s) 13
BpuMI CCSGG 3 cut(s) 736, 748, 758
BsaBI GATNNNNATC 4 cut(s) 165, 270, 384, 711
BsaI GGTCTC 2 cut(s) 313, 1073
BsaJI CCNNGG 4 cut(s) 747, 876, 949, 972
Bsc4I CCNNNNNNNGG 9 cut(s) 83, 84, 188, 189, 293, 294, 606, 791, 927
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 5 cut(s) 88, 193, 298, 412, 1095
Bse3DI GCAATG 1 cut(s) 508
Bse8I GATNNNNATC 4 cut(s) 165, 270, 384, 711
BseBI CCWGG 3 cut(s) 263, 522, 950
BseDI CCNNGG 4 cut(s) 747, 876, 949, 972
BseGI GGATG 4 cut(s) 530, 625, 712, 1117
BseJI GATNNNNATC 4 cut(s) 165, 270, 384, 711
BseLI CCNNNNNNNGG 9 cut(s) 83, 84, 188, 189, 293, 294, 606, 791, 927
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 3 cut(s) 18, 27, 1169
BseNI ACTGG 5 cut(s) 88, 193, 298, 412, 1095
BseRI GAGGAG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 754
BseYI CCCAGC 1 cut(s) 605
Bsh1236I CGCG 5 cut(s) 66, 390, 588, 717, 797
Bsh1285I CGRYCG 1 cut(s) 747
BshFI GGCC 7 cut(s) 611, 624, 752, 778, 875, 948, 971
BsiEI CGRYCG 1 cut(s) 747
BsiSI CCGG 5 cut(s) 656, 735, 747, 758, 843
BslFI GGGAC 5 cut(s) 100, 205, 310, 424, 751
BslI CCNNNNNNNGG 9 cut(s) 83, 84, 188, 189, 293, 294, 606, 791, 927
BsmAI GTCTC 2 cut(s) 313, 1073
BsmFI GGGAC 5 cut(s) 100, 205, 310, 424, 751
BsnI GGCC 7 cut(s) 611, 624, 752, 778, 875, 948, 971
Bso31I GGTCTC 2 cut(s) 313, 1073
Bsp120I GGGCCC 1 cut(s) 750
Bsp1286I GDGCHC 2 cut(s) 754, 933
Bsp143I GATC 8 cut(s) 4, 160, 265, 370, 379, 475, 571, 1121
Bsp1720I GCTNAGC 1 cut(s) 13
Bsp68I TCGCGA 3 cut(s) 66, 390, 717
BspANI GGCC 7 cut(s) 611, 624, 752, 778, 875, 948, 971
BspCNI CTCAG 3 cut(s) 19, 26, 1168
BspFNI CGCG 5 cut(s) 66, 390, 588, 717, 797
BspLI GGNNCC 7 cut(s) 88, 193, 298, 412, 610, 751, 752
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 6 cut(s) 12, 168, 273, 387, 483, 1129
BspQI GCTCTTC 1 cut(s) 357
BspTNI GGTCTC 2 cut(s) 313, 1073
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 5 cut(s) 88, 193, 298, 412, 1095
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 4 cut(s) 747, 876, 949, 972
BssMI GATC 8 cut(s) 4, 160, 265, 370, 379, 475, 571, 1121
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 3 cut(s) 263, 522, 950
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 2 cut(s) 357, 922
BstC8I GCNNGC 9 cut(s) 183, 288, 499, 639, 768, 786, 815, 895, 929
BstDEI CTNAG 3 cut(s) 13, 27, 1155
BstF5I GGATG 4 cut(s) 530, 625, 712, 1117
BstFNI CGCG 5 cut(s) 66, 390, 588, 717, 797
BstH2I RGCGCY 2 cut(s) 13, 831
BstHHI GCGC 4 cut(s) 12, 730, 797, 830
BstKTI GATC 8 cut(s) 7, 163, 268, 373, 382, 478, 574, 1124
BstMAI GTCTC 2 cut(s) 313, 1073
BstMBI GATC 8 cut(s) 4, 160, 265, 370, 379, 475, 571, 1121
BstMCI CGRYCG 1 cut(s) 747
BstNI CCWGG 3 cut(s) 263, 522, 950
BstNSI RCATGY 2 cut(s) 641, 770
BstSCI CCNGG 6 cut(s) 261, 520, 734, 746, 756, 948
BstSLI GKGCMC 1 cut(s) 754
BstUI CGCG 5 cut(s) 66, 390, 588, 717, 797
BstX2I RGATCY 1 cut(s) 1121
BstYI RGATCY 1 cut(s) 1121
BsuRI GGCC 7 cut(s) 611, 624, 752, 778, 875, 948, 971
BtgZI GCGATG 1 cut(s) 900
BtsCI GGATG 4 cut(s) 530, 625, 712, 1117
BtsIMutI CAGTG 4 cut(s) 81, 186, 291, 405
BtuMI TCGCGA 3 cut(s) 66, 390, 717
Cac8I GCNNGC 9 cut(s) 183, 288, 499, 639, 768, 786, 815, 895, 929
CfoI GCGC 4 cut(s) 12, 730, 797, 830
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 9 cut(s) 87, 192, 297, 411, 577, 609, 750, 751, 776
CseI GACGC 1 cut(s) 917
Csp6I GTAC 1 cut(s) 991
CviAII CATG 4 cut(s) 638, 767, 1055, 1076
CviQI GTAC 1 cut(s) 991
DdeI CTNAG 3 cut(s) 13, 27, 1155
DpnI GATC 8 cut(s) 6, 162, 267, 372, 381, 477, 573, 1123
DpnII GATC 8 cut(s) 4, 160, 265, 370, 379, 475, 571, 1121
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 2 cut(s) 357, 922
EarI CTCTTC 2 cut(s) 357, 922
EciI GGCGGA 3 cut(s) 1017, 1026, 1134
Eco130I CCWWGG 1 cut(s) 876
Eco147I AGGCCT 1 cut(s) 948
Eco24I GRGCYC 2 cut(s) 754, 933
Eco31I GGTCTC 2 cut(s) 313, 1073
Eco47I GGWCC 5 cut(s) 87, 192, 297, 411, 577
Eco57I CTGAAG 5 cut(s) 150, 255, 366, 573, 696
EcoO109I RGGNCCY 1 cut(s) 750
EcoRII CCWGG 3 cut(s) 261, 520, 948
EcoT14I CCWWGG 1 cut(s) 876
EcoT22I ATGCAT 1 cut(s) 772
EcoT38I GRGCYC 2 cut(s) 754, 933
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 4 cut(s) 641, 770, 1058, 1079
FaqI GGGAC 5 cut(s) 100, 205, 310, 424, 751
FatI CATG 4 cut(s) 637, 766, 1054, 1075
FauI CCCGC 4 cut(s) 190, 295, 920, 1027
FokI GGATG 4 cut(s) 517, 612, 719, 1124
FriOI GRGCYC 2 cut(s) 754, 933
FspBI CTAG 2 cut(s) 498, 905
GlaI GCGC 4 cut(s) 11, 729, 796, 829
GsaI CCCAGC 1 cut(s) 609
HaeII RGCGCY 2 cut(s) 13, 831
HaeIII GGCC 7 cut(s) 611, 624, 752, 778, 875, 948, 971
HapII CCGG 5 cut(s) 656, 735, 747, 758, 843
HgaI GACGC 1 cut(s) 917
HhaI GCGC 4 cut(s) 12, 730, 797, 830
Hin1II CATG 4 cut(s) 641, 770, 1058, 1079
Hin6I GCGC 4 cut(s) 10, 728, 795, 828
HinP1I GCGC 4 cut(s) 10, 728, 795, 828
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 2 cut(s) 55, 1058
HpaII CCGG 5 cut(s) 656, 735, 747, 758, 843
HphI GGTGA 1 cut(s) 1082
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 2 cut(s) 28, 54
Hpy188III TCNNGA 9 cut(s) 65, 318, 374, 389, 575, 629, 701, 716, 905
Hpy8I GTNNAC 1 cut(s) 868
HpyAV CCTTC 4 cut(s) 41, 671, 856, 938
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 1 cut(s) 960
HpyCH4V TGCA 2 cut(s) 641, 770
HpyF3I CTNAG 3 cut(s) 13, 27, 1155
HpySE526I ACGT 1 cut(s) 960
Hsp92II CATG 4 cut(s) 641, 770, 1058, 1079
HspAI GCGC 4 cut(s) 10, 728, 795, 828
Kzo9I GATC 8 cut(s) 4, 160, 265, 370, 379, 475, 571, 1121
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 2 cut(s) 845, 987
LweI GCATC 2 cut(s) 779, 877
MaeI CTAG 2 cut(s) 498, 905
MaeII ACGT 1 cut(s) 960
MaeIII GTNAC 1 cut(s) 505
MalI GATC 8 cut(s) 6, 162, 267, 372, 381, 477, 573, 1123
MboI GATC 8 cut(s) 4, 160, 265, 370, 379, 475, 571, 1121
MflI RGATCY 1 cut(s) 1121
MhlI GDGCHC 2 cut(s) 754, 933
MlsI TGGCCA 1 cut(s) 624
MluNI TGGCCA 1 cut(s) 624
Mox20I TGGCCA 1 cut(s) 624
Mph1103I ATGCAT 1 cut(s) 772
MscI TGGCCA 1 cut(s) 624
MseI TTAA 2 cut(s) 1146, 1166
Msp20I TGGCCA 1 cut(s) 624
MspA1I CMGCKG 5 cut(s) 452, 605, 644, 674, 999
MspI CCGG 5 cut(s) 656, 735, 747, 758, 843
MspR9I CCNGG 6 cut(s) 263, 522, 736, 748, 758, 950
MvaI CCWGG 3 cut(s) 263, 522, 950
MvnI CGCG 5 cut(s) 66, 390, 588, 717, 797
NciI CCSGG 3 cut(s) 736, 748, 758
NdeII GATC 8 cut(s) 4, 160, 265, 370, 379, 475, 571, 1121
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 4 cut(s) 641, 770, 1058, 1079
NlaIV GGNNCC 7 cut(s) 88, 193, 298, 412, 610, 751, 752
NmeAIII GCCGAG 1 cut(s) 997
NmuCI GTSAC 1 cut(s) 505
NruI TCGCGA 3 cut(s) 66, 390, 717
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 2 cut(s) 641, 770
PaeI GCATGC 2 cut(s) 641, 770
PceI AGGCCT 1 cut(s) 948
PciSI GCTCTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 55, 1058
Psp6I CCWGG 3 cut(s) 261, 520, 948
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 3 cut(s) 261, 520, 948
PspN4I GGNNCC 7 cut(s) 88, 193, 298, 412, 610, 751, 752
PspOMI GGGCCC 1 cut(s) 750
PspPI GGNCC 9 cut(s) 87, 192, 297, 411, 577, 609, 750, 751, 776
PsuI RGATCY 1 cut(s) 1121
PvuII CAGCTG 2 cut(s) 644, 674
RruI TCGCGA 3 cut(s) 66, 390, 717
RsaI GTAC 1 cut(s) 992
RsaNI GTAC 1 cut(s) 991
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 1146, 1166
Sau3AI GATC 8 cut(s) 4, 160, 265, 370, 379, 475, 571, 1121
Sau96I GGNCC 9 cut(s) 87, 192, 297, 411, 577, 609, 750, 751, 776
ScrFI CCNGG 6 cut(s) 263, 522, 736, 748, 758, 950
SduI GDGCHC 2 cut(s) 754, 933
SfaNI GCATC 2 cut(s) 779, 877
SinI GGWCC 5 cut(s) 87, 192, 297, 411, 577
SphI GCATGC 2 cut(s) 641, 770
SseBI AGGCCT 1 cut(s) 948
SspI AATATT 1 cut(s) 901
SspMI CTAG 2 cut(s) 498, 905
StuI AGGCCT 1 cut(s) 948
StyD4I CCNGG 6 cut(s) 261, 520, 734, 746, 756, 948
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 1 cut(s) 963
TaqI TCGA 3 cut(s) 317, 668, 806
TauI GCSGC 7 cut(s) 602, 605, 650, 1002, 1011, 1023, 1026
TfiI GAWTC 2 cut(s) 55, 1058
Tru1I TTAA 2 cut(s) 1146, 1166
Tru9I TTAA 2 cut(s) 1146, 1166
TscAI CASTG 4 cut(s) 88, 193, 298, 412
TseFI GTSAC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 6 cut(s) 60, 153, 258, 375, 723, 1071
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 4 cut(s) 88, 193, 298, 412
VpaK11BI GGWCC 5 cut(s) 87, 192, 297, 411, 577
XbaI TCTAGA 1 cut(s) 904
XceI RCATGY 2 cut(s) 641, 770
XspI CTAG 2 cut(s) 498, 905
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.