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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 5 cut(s) | 66, 390, 588, 717, 797 |
| AclWI | GGATC | 6 cut(s) | 12, 168, 273, 387, 483, 1129 |
| AcoI | YGGCCR | 1 cut(s) | 622 |
| AcuI | CTGAAG | 5 cut(s) | 150, 255, 366, 573, 696 |
| AfaI | GTAC | 1 cut(s) | 992 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 83, 84, 188, 189, 293, 294, 606, 791, 927 |
| AjnI | CCWGG | 3 cut(s) | 261, 520, 948 |
| Alw26I | GTCTC | 2 cut(s) | 313, 1073 |
| AlwI | GGATC | 6 cut(s) | 12, 168, 273, 387, 483, 1129 |
| AoxI | GGCC | 7 cut(s) | 609, 622, 750, 776, 873, 946, 969 |
| ApaI | GGGCCC | 1 cut(s) | 754 |
| AspLEI | GCGC | 4 cut(s) | 12, 730, 797, 830 |
| AspS9I | GGNCC | 9 cut(s) | 87, 192, 297, 411, 577, 609, 750, 751, 776 |
| AsuC2I | CCSGG | 3 cut(s) | 736, 748, 758 |
| AsuHPI | GGTGA | 1 cut(s) | 1082 |
| AsuNHI | GCTAGC | 1 cut(s) | 497 |
| AvaII | GGWCC | 5 cut(s) | 87, 192, 297, 411, 577 |
| BaeGI | GKGCMC | 1 cut(s) | 754 |
| BalI | TGGCCA | 1 cut(s) | 624 |
| BanII | GRGCYC | 2 cut(s) | 754, 933 |
| BccI | CCATC | 6 cut(s) | 442, 538, 633, 673, 811, 1144 |
| BceAI | ACGGC | 3 cut(s) | 756, 940, 1009 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 620, 654 |
| BciT130I | CCWGG | 3 cut(s) | 263, 522, 950 |
| BcnI | CCSGG | 3 cut(s) | 736, 748, 758 |
| BcoDI | GTCTC | 2 cut(s) | 313, 1073 |
| BfaI | CTAG | 2 cut(s) | 498, 905 |
| BfoI | RGCGCY | 2 cut(s) | 13, 831 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 608 |
| BlpI | GCTNAGC | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 6 cut(s) | 263, 522, 736, 748, 758, 950 |
| Bme18I | GGWCC | 5 cut(s) | 87, 192, 297, 411, 577 |
| BmgT120I | GGNCC | 9 cut(s) | 87, 192, 297, 411, 577, 609, 750, 751, 776 |
| BmiI | GGNNCC | 7 cut(s) | 88, 193, 298, 412, 610, 751, 752 |
| BmrFI | CCNGG | 6 cut(s) | 263, 522, 736, 748, 758, 950 |
| BmrI | ACTGGG | 5 cut(s) | 93, 198, 303, 417, 1089 |
| BmsI | GCATC | 2 cut(s) | 779, 877 |
| BmtI | GCTAGC | 1 cut(s) | 501 |
| BmuI | ACTGGG | 5 cut(s) | 93, 198, 303, 417, 1089 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1155 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 13 |
| BpuMI | CCSGG | 3 cut(s) | 736, 748, 758 |
| BsaBI | GATNNNNATC | 4 cut(s) | 165, 270, 384, 711 |
| BsaI | GGTCTC | 2 cut(s) | 313, 1073 |
| BsaJI | CCNNGG | 4 cut(s) | 747, 876, 949, 972 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 83, 84, 188, 189, 293, 294, 606, 791, 927 |
| Bse118I | RCCGGY | 1 cut(s) | 655 |
| Bse1I | ACTGG | 5 cut(s) | 88, 193, 298, 412, 1095 |
| Bse3DI | GCAATG | 1 cut(s) | 508 |
| Bse8I | GATNNNNATC | 4 cut(s) | 165, 270, 384, 711 |
| BseBI | CCWGG | 3 cut(s) | 263, 522, 950 |
| BseDI | CCNNGG | 4 cut(s) | 747, 876, 949, 972 |
| BseGI | GGATG | 4 cut(s) | 530, 625, 712, 1117 |
| BseJI | GATNNNNATC | 4 cut(s) | 165, 270, 384, 711 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 83, 84, 188, 189, 293, 294, 606, 791, 927 |
| BseMI | GCAATG | 1 cut(s) | 508 |
| BseMII | CTCAG | 3 cut(s) | 18, 27, 1169 |
| BseNI | ACTGG | 5 cut(s) | 88, 193, 298, 412, 1095 |
| BseRI | GAGGAG | 1 cut(s) | 578 |
| BseSI | GKGCMC | 1 cut(s) | 754 |
| BseYI | CCCAGC | 1 cut(s) | 605 |
| Bsh1236I | CGCG | 5 cut(s) | 66, 390, 588, 717, 797 |
| Bsh1285I | CGRYCG | 1 cut(s) | 747 |
| BshFI | GGCC | 7 cut(s) | 611, 624, 752, 778, 875, 948, 971 |
| BsiEI | CGRYCG | 1 cut(s) | 747 |
| BsiSI | CCGG | 5 cut(s) | 656, 735, 747, 758, 843 |
| BslFI | GGGAC | 5 cut(s) | 100, 205, 310, 424, 751 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 83, 84, 188, 189, 293, 294, 606, 791, 927 |
| BsmAI | GTCTC | 2 cut(s) | 313, 1073 |
| BsmFI | GGGAC | 5 cut(s) | 100, 205, 310, 424, 751 |
| BsnI | GGCC | 7 cut(s) | 611, 624, 752, 778, 875, 948, 971 |
| Bso31I | GGTCTC | 2 cut(s) | 313, 1073 |
| Bsp120I | GGGCCC | 1 cut(s) | 750 |
| Bsp1286I | GDGCHC | 2 cut(s) | 754, 933 |
| Bsp143I | GATC | 8 cut(s) | 4, 160, 265, 370, 379, 475, 571, 1121 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 13 |
| Bsp68I | TCGCGA | 3 cut(s) | 66, 390, 717 |
| BspANI | GGCC | 7 cut(s) | 611, 624, 752, 778, 875, 948, 971 |
| BspCNI | CTCAG | 3 cut(s) | 19, 26, 1168 |
| BspFNI | CGCG | 5 cut(s) | 66, 390, 588, 717, 797 |
| BspLI | GGNNCC | 7 cut(s) | 88, 193, 298, 412, 610, 751, 752 |
| BspOI | GCTAGC | 1 cut(s) | 501 |
| BspPI | GGATC | 6 cut(s) | 12, 168, 273, 387, 483, 1129 |
| BspQI | GCTCTTC | 1 cut(s) | 357 |
| BspTNI | GGTCTC | 2 cut(s) | 313, 1073 |
| BsrDI | GCAATG | 1 cut(s) | 508 |
| BsrFI | RCCGGY | 1 cut(s) | 655 |
| BsrI | ACTGG | 5 cut(s) | 88, 193, 298, 412, 1095 |
| BssAI | RCCGGY | 1 cut(s) | 655 |
| BssECI | CCNNGG | 4 cut(s) | 747, 876, 949, 972 |
| BssMI | GATC | 8 cut(s) | 4, 160, 265, 370, 379, 475, 571, 1121 |
| BssT1I | CCWWGG | 1 cut(s) | 876 |
| Bst2UI | CCWGG | 3 cut(s) | 263, 522, 950 |
| Bst4CI | ACNGT | 1 cut(s) | 545 |
| Bst6I | CTCTTC | 2 cut(s) | 357, 922 |
| BstC8I | GCNNGC | 9 cut(s) | 183, 288, 499, 639, 768, 786, 815, 895, 929 |
| BstDEI | CTNAG | 3 cut(s) | 13, 27, 1155 |
| BstF5I | GGATG | 4 cut(s) | 530, 625, 712, 1117 |
| BstFNI | CGCG | 5 cut(s) | 66, 390, 588, 717, 797 |
| BstH2I | RGCGCY | 2 cut(s) | 13, 831 |
| BstHHI | GCGC | 4 cut(s) | 12, 730, 797, 830 |
| BstKTI | GATC | 8 cut(s) | 7, 163, 268, 373, 382, 478, 574, 1124 |
| BstMAI | GTCTC | 2 cut(s) | 313, 1073 |
| BstMBI | GATC | 8 cut(s) | 4, 160, 265, 370, 379, 475, 571, 1121 |
| BstMCI | CGRYCG | 1 cut(s) | 747 |
| BstNI | CCWGG | 3 cut(s) | 263, 522, 950 |
| BstNSI | RCATGY | 2 cut(s) | 641, 770 |
| BstSCI | CCNGG | 6 cut(s) | 261, 520, 734, 746, 756, 948 |
| BstSLI | GKGCMC | 1 cut(s) | 754 |
| BstUI | CGCG | 5 cut(s) | 66, 390, 588, 717, 797 |
| BstX2I | RGATCY | 1 cut(s) | 1121 |
| BstYI | RGATCY | 1 cut(s) | 1121 |
| BsuRI | GGCC | 7 cut(s) | 611, 624, 752, 778, 875, 948, 971 |
| BtgZI | GCGATG | 1 cut(s) | 900 |
| BtsCI | GGATG | 4 cut(s) | 530, 625, 712, 1117 |
| BtsIMutI | CAGTG | 4 cut(s) | 81, 186, 291, 405 |
| BtuMI | TCGCGA | 3 cut(s) | 66, 390, 717 |
| Cac8I | GCNNGC | 9 cut(s) | 183, 288, 499, 639, 768, 786, 815, 895, 929 |
| CfoI | GCGC | 4 cut(s) | 12, 730, 797, 830 |
| Cfr10I | RCCGGY | 1 cut(s) | 655 |
| Cfr13I | GGNCC | 9 cut(s) | 87, 192, 297, 411, 577, 609, 750, 751, 776 |
| CseI | GACGC | 1 cut(s) | 917 |
| Csp6I | GTAC | 1 cut(s) | 991 |
| CviAII | CATG | 4 cut(s) | 638, 767, 1055, 1076 |
| CviQI | GTAC | 1 cut(s) | 991 |
| DdeI | CTNAG | 3 cut(s) | 13, 27, 1155 |
| DpnI | GATC | 8 cut(s) | 6, 162, 267, 372, 381, 477, 573, 1123 |
| DpnII | GATC | 8 cut(s) | 4, 160, 265, 370, 379, 475, 571, 1121 |
| EaeI | YGGCCR | 1 cut(s) | 622 |
| Eam1104I | CTCTTC | 2 cut(s) | 357, 922 |
| EarI | CTCTTC | 2 cut(s) | 357, 922 |
| EciI | GGCGGA | 3 cut(s) | 1017, 1026, 1134 |
| Eco130I | CCWWGG | 1 cut(s) | 876 |
| Eco147I | AGGCCT | 1 cut(s) | 948 |
| Eco24I | GRGCYC | 2 cut(s) | 754, 933 |
| Eco31I | GGTCTC | 2 cut(s) | 313, 1073 |
| Eco47I | GGWCC | 5 cut(s) | 87, 192, 297, 411, 577 |
| Eco57I | CTGAAG | 5 cut(s) | 150, 255, 366, 573, 696 |
| EcoO109I | RGGNCCY | 1 cut(s) | 750 |
| EcoRII | CCWGG | 3 cut(s) | 261, 520, 948 |
| EcoT14I | CCWWGG | 1 cut(s) | 876 |
| EcoT22I | ATGCAT | 1 cut(s) | 772 |
| EcoT38I | GRGCYC | 2 cut(s) | 754, 933 |
| ErhI | CCWWGG | 1 cut(s) | 876 |
| FaeI | CATG | 4 cut(s) | 641, 770, 1058, 1079 |
| FaqI | GGGAC | 5 cut(s) | 100, 205, 310, 424, 751 |
| FatI | CATG | 4 cut(s) | 637, 766, 1054, 1075 |
| FauI | CCCGC | 4 cut(s) | 190, 295, 920, 1027 |
| FokI | GGATG | 4 cut(s) | 517, 612, 719, 1124 |
| FriOI | GRGCYC | 2 cut(s) | 754, 933 |
| FspBI | CTAG | 2 cut(s) | 498, 905 |
| GlaI | GCGC | 4 cut(s) | 11, 729, 796, 829 |
| GsaI | CCCAGC | 1 cut(s) | 609 |
| HaeII | RGCGCY | 2 cut(s) | 13, 831 |
| HaeIII | GGCC | 7 cut(s) | 611, 624, 752, 778, 875, 948, 971 |
| HapII | CCGG | 5 cut(s) | 656, 735, 747, 758, 843 |
| HgaI | GACGC | 1 cut(s) | 917 |
| HhaI | GCGC | 4 cut(s) | 12, 730, 797, 830 |
| Hin1II | CATG | 4 cut(s) | 641, 770, 1058, 1079 |
| Hin6I | GCGC | 4 cut(s) | 10, 728, 795, 828 |
| HinP1I | GCGC | 4 cut(s) | 10, 728, 795, 828 |
| HindIII | AAGCTT | 1 cut(s) | 309 |
| HinfI | GANTC | 2 cut(s) | 55, 1058 |
| HpaII | CCGG | 5 cut(s) | 656, 735, 747, 758, 843 |
| HphI | GGTGA | 1 cut(s) | 1082 |
| Hpy166II | GTNNAC | 1 cut(s) | 868 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 54 |
| Hpy188III | TCNNGA | 9 cut(s) | 65, 318, 374, 389, 575, 629, 701, 716, 905 |
| Hpy8I | GTNNAC | 1 cut(s) | 868 |
| HpyAV | CCTTC | 4 cut(s) | 41, 671, 856, 938 |
| HpyCH4III | ACNGT | 1 cut(s) | 545 |
| HpyCH4IV | ACGT | 1 cut(s) | 960 |
| HpyCH4V | TGCA | 2 cut(s) | 641, 770 |
| HpyF3I | CTNAG | 3 cut(s) | 13, 27, 1155 |
| HpySE526I | ACGT | 1 cut(s) | 960 |
| Hsp92II | CATG | 4 cut(s) | 641, 770, 1058, 1079 |
| HspAI | GCGC | 4 cut(s) | 10, 728, 795, 828 |
| Kzo9I | GATC | 8 cut(s) | 4, 160, 265, 370, 379, 475, 571, 1121 |
| LguI | GCTCTTC | 1 cut(s) | 357 |
| LmnI | GCTCC | 2 cut(s) | 845, 987 |
| LweI | GCATC | 2 cut(s) | 779, 877 |
| MaeI | CTAG | 2 cut(s) | 498, 905 |
| MaeII | ACGT | 1 cut(s) | 960 |
| MaeIII | GTNAC | 1 cut(s) | 505 |
| MalI | GATC | 8 cut(s) | 6, 162, 267, 372, 381, 477, 573, 1123 |
| MboI | GATC | 8 cut(s) | 4, 160, 265, 370, 379, 475, 571, 1121 |
| MflI | RGATCY | 1 cut(s) | 1121 |
| MhlI | GDGCHC | 2 cut(s) | 754, 933 |
| MlsI | TGGCCA | 1 cut(s) | 624 |
| MluNI | TGGCCA | 1 cut(s) | 624 |
| Mox20I | TGGCCA | 1 cut(s) | 624 |
| Mph1103I | ATGCAT | 1 cut(s) | 772 |
| MscI | TGGCCA | 1 cut(s) | 624 |
| MseI | TTAA | 2 cut(s) | 1146, 1166 |
| Msp20I | TGGCCA | 1 cut(s) | 624 |
| MspA1I | CMGCKG | 5 cut(s) | 452, 605, 644, 674, 999 |
| MspI | CCGG | 5 cut(s) | 656, 735, 747, 758, 843 |
| MspR9I | CCNGG | 6 cut(s) | 263, 522, 736, 748, 758, 950 |
| MvaI | CCWGG | 3 cut(s) | 263, 522, 950 |
| MvnI | CGCG | 5 cut(s) | 66, 390, 588, 717, 797 |
| NciI | CCSGG | 3 cut(s) | 736, 748, 758 |
| NdeII | GATC | 8 cut(s) | 4, 160, 265, 370, 379, 475, 571, 1121 |
| NheI | GCTAGC | 1 cut(s) | 497 |
| NlaIII | CATG | 4 cut(s) | 641, 770, 1058, 1079 |
| NlaIV | GGNNCC | 7 cut(s) | 88, 193, 298, 412, 610, 751, 752 |
| NmeAIII | GCCGAG | 1 cut(s) | 997 |
| NmuCI | GTSAC | 1 cut(s) | 505 |
| NruI | TCGCGA | 3 cut(s) | 66, 390, 717 |
| NsiI | ATGCAT | 1 cut(s) | 772 |
| NspI | RCATGY | 2 cut(s) | 641, 770 |
| PaeI | GCATGC | 2 cut(s) | 641, 770 |
| PceI | AGGCCT | 1 cut(s) | 948 |
| PciSI | GCTCTTC | 1 cut(s) | 357 |
| PfeI | GAWTC | 2 cut(s) | 55, 1058 |
| Psp6I | CCWGG | 3 cut(s) | 261, 520, 948 |
| PspFI | CCCAGC | 1 cut(s) | 605 |
| PspGI | CCWGG | 3 cut(s) | 261, 520, 948 |
| PspN4I | GGNNCC | 7 cut(s) | 88, 193, 298, 412, 610, 751, 752 |
| PspOMI | GGGCCC | 1 cut(s) | 750 |
| PspPI | GGNCC | 9 cut(s) | 87, 192, 297, 411, 577, 609, 750, 751, 776 |
| PsuI | RGATCY | 1 cut(s) | 1121 |
| PvuII | CAGCTG | 2 cut(s) | 644, 674 |
| RruI | TCGCGA | 3 cut(s) | 66, 390, 717 |
| RsaI | GTAC | 1 cut(s) | 992 |
| RsaNI | GTAC | 1 cut(s) | 991 |
| SapI | GCTCTTC | 1 cut(s) | 357 |
| SaqAI | TTAA | 2 cut(s) | 1146, 1166 |
| Sau3AI | GATC | 8 cut(s) | 4, 160, 265, 370, 379, 475, 571, 1121 |
| Sau96I | GGNCC | 9 cut(s) | 87, 192, 297, 411, 577, 609, 750, 751, 776 |
| ScrFI | CCNGG | 6 cut(s) | 263, 522, 736, 748, 758, 950 |
| SduI | GDGCHC | 2 cut(s) | 754, 933 |
| SfaNI | GCATC | 2 cut(s) | 779, 877 |
| SinI | GGWCC | 5 cut(s) | 87, 192, 297, 411, 577 |
| SphI | GCATGC | 2 cut(s) | 641, 770 |
| SseBI | AGGCCT | 1 cut(s) | 948 |
| SspI | AATATT | 1 cut(s) | 901 |
| SspMI | CTAG | 2 cut(s) | 498, 905 |
| StuI | AGGCCT | 1 cut(s) | 948 |
| StyD4I | CCNGG | 6 cut(s) | 261, 520, 734, 746, 756, 948 |
| StyI | CCWWGG | 1 cut(s) | 876 |
| TaaI | ACNGT | 1 cut(s) | 545 |
| TaiI | ACGT | 1 cut(s) | 963 |
| TaqI | TCGA | 3 cut(s) | 317, 668, 806 |
| TauI | GCSGC | 7 cut(s) | 602, 605, 650, 1002, 1011, 1023, 1026 |
| TfiI | GAWTC | 2 cut(s) | 55, 1058 |
| Tru1I | TTAA | 2 cut(s) | 1146, 1166 |
| Tru9I | TTAA | 2 cut(s) | 1146, 1166 |
| TscAI | CASTG | 4 cut(s) | 88, 193, 298, 412 |
| TseFI | GTSAC | 1 cut(s) | 505 |
| Tsp45I | GTSAC | 1 cut(s) | 505 |
| TspDTI | ATGAA | 6 cut(s) | 60, 153, 258, 375, 723, 1071 |
| TspGWI | ACGGA | 1 cut(s) | 974 |
| TspRI | CASTG | 4 cut(s) | 88, 193, 298, 412 |
| VpaK11BI | GGWCC | 5 cut(s) | 87, 192, 297, 411, 577 |
| XbaI | TCTAGA | 1 cut(s) | 904 |
| XceI | RCATGY | 2 cut(s) | 641, 770 |
| XspI | CTAG | 2 cut(s) | 498, 905 |
| Zsp2I | ATGCAT | 1 cut(s) | 772 |