Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

3804787 .. 3805236

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGGATGAAGAGGATCGATCAGGGCGAACATCGTGAGCGGAAAATGGGAGGAGCGAAGGAGAAAGGCGGGAAGCCATCGATGGGGGAGATGATGTCGAGCGCGAAAATTGTGGCGGGCGCGGCTAAAGGGGAGAAGTACGACAAAGCTGAGGTTTGCAAGGCTGCCAGCACCGTTCTAAGCGCTGCCTCCACATACGGTGGTTTCGACGAGAAGGAAGGCATGGGGAGTTACATCGGCAAGGCCGAAGGTTTGCTCCGCAAGTACGGCGGTGGTGGCACAGAGGGTGAGGGAGGTGGCCACAAAACTTCTCATTCTTCAGCTTCTGAGTCGGAGGAGAGCCGTAAAGGCAAGAAAAGCCACACTAAAAAGGATGACGGTGAGGAGGAGGGTGGGCATGGTAAATTTGGGGGCTATTTAAAGATGGCTCAAGGTTTCATGAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0002833 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043900 GO:0043902 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080134 GO:0097305 GO:0097306 GO:1900424 GO:1900426 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

15.59

Weight (kDa)

9.01

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	40
AccII	CGCG	2 cut(s)	104, 122
AciI	CCGC	6 cut(s)	40, 69, 116, 122, 259, 270
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	140, 266
AfeI	AGCGCT	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	83
AluBI	AGCT	2 cut(s)	149, 323
AluI	AGCT	2 cut(s)	149, 323
AlwI	GGATC	1 cut(s)	23
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	184
AoxI	GGCC	2 cut(s)	243, 298
ApeKI	GCWGC	2 cut(s)	164, 185
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	3 cut(s)	104, 122, 185
AsuHPI	GGTGA	2 cut(s)	299, 392
BalI	TGGCCA	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	151, 172
BccI	CCATC	3 cut(s)	76, 85, 418
BceAI	ACGGC	2 cut(s)	283, 327
BfoI	RGCGCY	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	123, 165, 186
BlsI	GCNGC	3 cut(s)	124, 166, 187
Bpu10I	CCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	414
Bsa29I	ATCGAT	2 cut(s)	18, 80
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseCI	ATCGAT	2 cut(s)	18, 80
BseGI	GGATG	2 cut(s)	12, 379
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	141, 318
BseRI	GAGGAG	4 cut(s)	66, 350, 398, 401
BseXI	GCAGC	2 cut(s)	151, 172
Bsh1236I	CGCG	2 cut(s)	104, 122
BshFI	GGCC	2 cut(s)	245, 300
BshVI	ATCGAT	2 cut(s)	18, 80
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	2 cut(s)	245, 300
Bsp143I	GATC	2 cut(s)	15, 19
BspACI	CCGC	6 cut(s)	40, 69, 116, 122, 259, 270
BspANI	GGCC	2 cut(s)	245, 300
BspCNI	CTCAG	2 cut(s)	142, 319
BspDI	ATCGAT	2 cut(s)	18, 80
BspFNI	CGCG	2 cut(s)	104, 122
BspHI	TCATGA	1 cut(s)	438
BspPI	GGATC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	40
BssMI	GATC	2 cut(s)	15, 19
Bst4CI	ACNGT	3 cut(s)	175, 200, 380
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	118, 169
BstDEI	CTNAG	3 cut(s)	150, 179, 327
BstF5I	GGATG	2 cut(s)	12, 379
BstFNI	CGCG	2 cut(s)	104, 122
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	3 cut(s)	104, 122, 185
BstKTI	GATC	2 cut(s)	18, 22
BstMBI	GATC	2 cut(s)	15, 19
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 267, 276, 348, 357
BstUI	CGCG	2 cut(s)	104, 122
BstV1I	GCAGC	2 cut(s)	151, 172
Bsu15I	ATCGAT	2 cut(s)	18, 80
BsuRI	GGCC	2 cut(s)	245, 300
BsuTUI	ATCGAT	2 cut(s)	18, 80
BtsCI	GGATG	2 cut(s)	12, 379
Cac8I	GCNNGC	2 cut(s)	118, 169
CaiI	CAGNNNCTG	1 cut(s)	326
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	3 cut(s)	104, 122, 185
ClaI	ATCGAT	2 cut(s)	18, 80
Csp6I	GTAC	2 cut(s)	139, 265
CviAII	CATG	3 cut(s)	223, 398, 439
CviQI	GTAC	2 cut(s)	139, 265
DdeI	CTNAG	3 cut(s)	150, 179, 327
DpnI	GATC	2 cut(s)	17, 21
DpnII	GATC	2 cut(s)	15, 19
DraI	TTTAAA	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco47III	AGCGCT	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	303
FaeI	CATG	3 cut(s)	226, 401, 442
FaiI	YATR	4 cut(s)	196, 224, 399, 440
FatI	CATG	3 cut(s)	222, 397, 438
FauI	CCCGC	2 cut(s)	62, 109
Fnu4HI	GCNGC	3 cut(s)	123, 165, 186
FokI	GGATG	2 cut(s)	19, 386
Fsp4HI	GCNGC	3 cut(s)	123, 165, 186
GlaI	GCGC	3 cut(s)	103, 121, 184
GluI	GCNGC	3 cut(s)	123, 165, 186
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	245, 300
HhaI	GCGC	3 cut(s)	104, 122, 185
Hin1II	CATG	3 cut(s)	226, 401, 442
Hin6I	GCGC	3 cut(s)	102, 120, 183
HinP1I	GCGC	3 cut(s)	102, 120, 183
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	2 cut(s)	299, 392
Hpy188I	TCNGA	2 cut(s)	328, 334
Hpy188III	TCNNGA	2 cut(s)	35, 439
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	5 cut(s)	52, 208, 212, 242, 436
HpyCH4III	ACNGT	3 cut(s)	175, 200, 380
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 267, 276, 348, 357
HpyF3I	CTNAG	3 cut(s)	150, 179, 327
Hsp92II	CATG	3 cut(s)	226, 401, 442
HspAI	GCGC	3 cut(s)	102, 120, 183
Kzo9I	GATC	2 cut(s)	15, 19
LmnI	GCTCC	2 cut(s)	53, 261
LpnPI	CCDG	2 cut(s)	8, 181
Lsp1109I	GCAGC	2 cut(s)	151, 172
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	17, 21
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	2 cut(s)	15, 19
MboII	GAAGA	2 cut(s)	22, 309
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	2 cut(s)	108, 404
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	312
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	300
MvnI	CGCG	2 cut(s)	104, 122
MwoI	GCNNNNNNNGC	5 cut(s)	122, 267, 276, 348, 357
NdeII	GATC	2 cut(s)	15, 19
NlaIII	CATG	3 cut(s)	226, 401, 442
PagI	TCATGA	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 204, 243
PkrI	GCNGC	3 cut(s)	124, 166, 187
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	140, 266
RsaNI	GTAC	2 cut(s)	139, 265
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	3 cut(s)	123, 165, 186
Sau3AI	GATC	2 cut(s)	15, 19
SchI	GAGTC	1 cut(s)	338
SetI	ASST	6 cut(s)	151, 156, 253, 298, 325, 436
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	2 cut(s)	108, 404
SsiI	CCGC	6 cut(s)	40, 69, 116, 122, 259, 270
TaaI	ACNGT	3 cut(s)	175, 200, 380
TaqI	TCGA	4 cut(s)	18, 80, 98, 207
TasI	AATT	2 cut(s)	108, 404
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TseI	GCWGC	2 cut(s)	164, 185
TspDTI	ATGAA	2 cut(s)	23, 427
XapI	RAATTY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.