Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006553.1

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Forward (+)

85994 .. 86542

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006553.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgaccaccctctctcttcctcctccgagtttcaatcctctaaaactcgctcccaaatccctcattccccccaaaccggcctccgtctccgcctccgaacccgacccgtcctttacagaaaccccaaccctaggtccaaacccgacccaatcccccaccacgctcctccacctcgctttcaaccaagaccacacctgcttctccgccgccaccgactccggcttccgcgtctacacctgcgaccccttccgccacttccacagcgacccctccggtctacgcggcggccttggattcgtccagatgctcttccactgccactacttcgccgtcttcggcggcggaccagacccgttctgccccccccccccccccccccctgagatcgcggtggaccttgatgtgctagcgagggcggacctgctccagttcttgaggaaggaatgtgaggagcgaggtgctatgatcgtttctcaagccccaaattggagagagagtctgagactcggatcggagagagagagagagaagggtagttttggaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

182

Amino Acids

19.91

Weight (kDa)

6.05

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	203, 245
Acc36I	ACCTGC	3 cut(s)	203, 245, 429
AccI	GTMKAC	2 cut(s)	231, 277
AccII	CGCG	3 cut(s)	228, 282, 389
AclWI	GGATC	1 cut(s)	517
AfiI	CCNNNNNNNGG	3 cut(s)	76, 131, 486
AgsI	TTSAA	2 cut(s)	34, 181
Alw26I	GTCTC	2 cut(s)	91, 496
AlwI	GGATC	1 cut(s)	517
AoxI	GGCC	2 cut(s)	78, 286
AspA2I	CCTAGG	1 cut(s)	130
AspS9I	GGNCC	4 cut(s)	134, 344, 394, 418
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	4 cut(s)	134, 344, 394, 418
AvrII	CCTAGG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	91, 496
BfaI	CTAG	2 cut(s)	131, 407
BfuAI	ACCTGC	3 cut(s)	203, 245, 429
BisI	GCNGC	4 cut(s)	207, 283, 286, 340
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	4 cut(s)	208, 284, 287, 341
Bme18I	GGWCC	4 cut(s)	134, 344, 394, 418
BmgT120I	GGNCC	4 cut(s)	134, 344, 394, 418
BmsI	GCATC	1 cut(s)	294
BmtI	GCTAGC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	454, 459
BsaJI	CCNNGG	2 cut(s)	130, 289
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 131, 486
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	130, 289
BseLI	CCNNNNNNNGG	3 cut(s)	76, 131, 486
BseMII	CTCAG	2 cut(s)	372, 491
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	3 cut(s)	12, 155, 464
Bsh1236I	CGCG	3 cut(s)	228, 282, 389
BshFI	GGCC	2 cut(s)	80, 288
BsiSI	CCGG	3 cut(s)	77, 219, 273
BslI	CCNNNNNNNGG	3 cut(s)	76, 131, 486
BsmAI	GTCTC	2 cut(s)	91, 496
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	80, 288
Bsp143I	GATC	3 cut(s)	384, 465, 509
BspANI	GGCC	2 cut(s)	80, 288
BspCNI	CTCAG	2 cut(s)	373, 492
BspFNI	CGCG	3 cut(s)	228, 282, 389
BspMI	ACCTGC	3 cut(s)	203, 245, 429
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	1 cut(s)	517
BspQI	GCTCTTC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	130, 289
BssMI	GATC	3 cut(s)	384, 465, 509
BssT1I	CCWWGG	2 cut(s)	130, 289
Bst6I	CTCTTC	2 cut(s)	21, 314
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	381, 500
BstFNI	CGCG	3 cut(s)	228, 282, 389
BstKTI	GATC	3 cut(s)	387, 468, 512
BstMAI	GTCTC	2 cut(s)	91, 496
BstMBI	GATC	3 cut(s)	384, 465, 509
BstUI	CGCG	3 cut(s)	228, 282, 389
BstV2I	GAAGAC	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	80, 288
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	3 cut(s)	203, 245, 429
Cac8I	GCNNGC	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	4 cut(s)	134, 344, 394, 418
CseI	GACGC	1 cut(s)	217
CviJI	RGCY	4 cut(s)	80, 222, 288, 479
CviKI_1	RGCY	4 cut(s)	80, 222, 288, 479
DdeI	CTNAG	2 cut(s)	381, 500
DpnI	GATC	3 cut(s)	386, 467, 511
DpnII	GATC	3 cut(s)	384, 465, 509
Eam1104I	CTCTTC	2 cut(s)	21, 314
EarI	CTCTTC	2 cut(s)	21, 314
EciI	GGCGGA	5 cut(s)	79, 193, 239, 357, 431
Eco130I	CCWWGG	2 cut(s)	130, 289
Eco47I	GGWCC	4 cut(s)	134, 344, 394, 418
EcoT14I	CCWWGG	2 cut(s)	130, 289
ErhI	CCWWGG	2 cut(s)	130, 289
Esp3I	CGTCTC	1 cut(s)	91
FaiI	YATR	1 cut(s)	464
FblI	GTMKAC	2 cut(s)	231, 277
Fnu4HI	GCNGC	4 cut(s)	207, 283, 286, 340
Fsp4HI	GCNGC	4 cut(s)	207, 283, 286, 340
FspBI	CTAG	2 cut(s)	131, 407
GluI	GCNGC	4 cut(s)	207, 283, 286, 340
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	80, 288
HapII	CCGG	3 cut(s)	77, 219, 273
HgaI	GACGC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	215, 294, 496, 504
HpaII	CCGG	3 cut(s)	77, 219, 273
Hpy166II	GTNNAC	3 cut(s)	232, 278, 394
Hpy188I	TCNGA	5 cut(s)	27, 97, 501, 509, 514
Hpy188III	TCNNGA	2 cut(s)	301, 433
Hpy8I	GTNNAC	3 cut(s)	232, 278, 394
HpyAV	CCTTC	3 cut(s)	256, 433, 523
HpyF3I	CTNAG	2 cut(s)	381, 500
Kzo9I	GATC	3 cut(s)	384, 465, 509
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	4 cut(s)	55, 168, 429, 451
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	131, 407
MalI	GATC	3 cut(s)	386, 467, 511
MboI	GATC	3 cut(s)	384, 465, 509
MboII	GAAGA	3 cut(s)	8, 301, 325
MluCI	AATT	1 cut(s)	484
MlyI	GAGTC	3 cut(s)	209, 498, 505
MspI	CCGG	3 cut(s)	77, 219, 273
MvnI	CGCG	3 cut(s)	228, 282, 389
NdeII	GATC	3 cut(s)	384, 465, 509
NheI	GCTAGC	1 cut(s)	406
PaqCI	CACCTGC	2 cut(s)	203, 245
PciSI	GCTCTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	208, 284, 287, 341
PleI	GAGTC	3 cut(s)	209, 498, 504
PpsI	GAGTC	3 cut(s)	209, 498, 504
PspPI	GGNCC	4 cut(s)	134, 344, 394, 418
SapI	GCTCTTC	1 cut(s)	314
SatI	GCNGC	4 cut(s)	207, 283, 286, 340
Sau3AI	GATC	3 cut(s)	384, 465, 509
Sau96I	GGNCC	4 cut(s)	134, 344, 394, 418
SchI	GAGTC	3 cut(s)	209, 498, 505
SetI	ASST	7 cut(s)	136, 174, 197, 239, 399, 423, 460
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	4 cut(s)	134, 344, 394, 418
SmlI	CTYRAG	2 cut(s)	433, 474
SmoI	CTYRAG	2 cut(s)	433, 474
Sse9I	AATT	1 cut(s)	484
SspMI	CTAG	2 cut(s)	131, 407
StyI	CCWWGG	2 cut(s)	130, 289
TasI	AATT	1 cut(s)	484
TauI	GCSGC	4 cut(s)	209, 285, 288, 342
TfiI	GAWTC	1 cut(s)	294
TscAI	CASTG	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	320
VpaK11BI	GGWCC	4 cut(s)	134, 344, 394, 418
XmaJI	CCTAGG	1 cut(s)	130
XmiI	GTMKAC	2 cut(s)	231, 277
XspI	CTAG	2 cut(s)	131, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.