RchiOBHm_Chr7g0218611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000749
Physical Location & Seq
Reverse (-)
36779462 .. 36780409
948 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19569

Sequence Viewer

Length: 948 bp
ATGTTTTCTTGGGCCTGCGGCATGGTTCTTGGGCGATGGTCTAGCTCAAGGATGGAGGAAGGCGCGGTGGTGGCTGCATCTGGATATGTGGCTTGGCTAAGGTTTGAGTCCGGTCCAGCGTTGGATCTTAGTCGGATTGGGGAGGTGTCTTGCATTGGTCGGAAGGTGTGGCAGGATCTACGGTTTGCTGCTGCGGATCGGTGGATCGACGGTGGTCTTTTGTTGTTTGATTTCGGTTTCTGTTGTAGATCCATGGGTTTTGGATGTTTGGGTCTACGGTGGTGCGTGAGGTCCGACAGGCAGGGGAGCGCTGGTACTGGGGATCTAACGCTGGTGGTGGAGCGGCAGGAGTGGTGGGGAAGCGACGGTGCAGGTGCAGCTGGTGACGTGATTTGCCGGTGGGGCTCGTTTTGCCGGCAGCGGCCTTGGTGGAGCGCGGTGCTGCCTTGGTGGATCGCGGCGCTGAGTTTTGGTGGGGAGTGGTGGTTGGGCCGGGTCCTTGTGCTTGGGCCTTGCTGTTTGGCTGGGCTTTGGTGTTTAGTTTTTTCTTCAGTTTTTGGTTTGAGTTGTTTAGTTTTTTGCAGTTTTTGGGTCTTTATGACCCCAAATAAGTCCTTCCTCCTCCGAGGTAGGGTGGTTAGTGTCATGAATTCTGGCGTTTGGTTTGAGTTAGATTGTTGGTTTTGGGTTTGTAGGGCCCAGTCTTTTGCCGGTTTTTGGCCGTGCATTTTATTATCAGCCTGTGCTGAGGTTTCCTGGGGGTCTTGGGATAGCCCGCTCAATAGTTATCTATTGTGGTTTGACCCCATCCTTGTCAATGCTACCTATTCTGGCCTTGCTACCTCGATCAGTCCTCCAATTCAACCTTCGTTTTTGTATTCATTGACAGTTCATTGTAGTGTCTTTAGAGTAAGTATGCATGGTGATAGTCAGTTGCTGCTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

35.19

Weight (kDa)

6.68

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 362
AccBSI CCGCTC 2 cut(s) 343, 778
AccI GTMKAC 1 cut(s) 274
AccII CGCG 3 cut(s) 65, 437, 458
AciI CCGC 8 cut(s) 18, 65, 194, 343, 421, 437, 458, 776
AclWI GGATC 7 cut(s) 132, 183, 204, 212, 243, 330, 461
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 1 cut(s) 316
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 631, 717
AgsI TTSAA 1 cut(s) 863
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 1 cut(s) 755
AjuI GAANNNNNNNTTGG 2 cut(s) 850, 882
AluBI AGCT 2 cut(s) 45, 380
AluI AGCT 2 cut(s) 45, 380
AlwI GGATC 7 cut(s) 132, 183, 204, 212, 243, 330, 461
AlwNI CAGNNNCTG 1 cut(s) 937
Aor51HI AGCGCT 1 cut(s) 310
AoxI GGCC 7 cut(s) 12, 422, 490, 509, 696, 719, 832
ApaI GGGCCC 1 cut(s) 700
ApeKI GCWGC 7 cut(s) 74, 188, 191, 377, 418, 442, 937
ApoI RAATTY 1 cut(s) 649
AspLEI GCGC 4 cut(s) 65, 311, 437, 463
AspS9I GGNCC 8 cut(s) 12, 113, 291, 490, 496, 509, 696, 697
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 395, 935
AvaII GGWCC 3 cut(s) 113, 291, 496
BaeGI GKGCMC 1 cut(s) 700
BanII GRGCYC 2 cut(s) 407, 700
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 7 cut(s) 61, 175, 178, 389, 429, 430, 924
BccI CCATC 3 cut(s) 30, 46, 815
BceAI ACGGC 1 cut(s) 706
BciT130I CCWGG 1 cut(s) 757
BcnI CCSGG 1 cut(s) 494
BfaI CTAG 2 cut(s) 42, 946
BfoI RGCGCY 2 cut(s) 312, 464
BfuAI ACCTGC 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 402
Bme1390I CCNGG 2 cut(s) 494, 757
Bme18I GGWCC 3 cut(s) 113, 291, 496
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 8 cut(s) 12, 113, 291, 490, 496, 509, 696, 697
BmiI GGNNCC 2 cut(s) 497, 698
BmrFI CCNGG 2 cut(s) 494, 757
BmrI ACTGGG 2 cut(s) 327, 694
BmsI GCATC 1 cut(s) 86
BmuI ACTGGG 2 cut(s) 327, 694
BoxI GACNNNNGTC 1 cut(s) 213
Bpu10I CCTNAGC 2 cut(s) 98, 747
BpuEI CTTGAG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 5 cut(s) 252, 425, 446, 625, 756
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 4 cut(s) 298, 328, 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 717
Bse118I RCCGGY 3 cut(s) 396, 414, 710
Bse1I ACTGG 2 cut(s) 322, 700
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 5 cut(s) 252, 425, 446, 625, 756
BseGI GGATG 3 cut(s) 57, 269, 807
BseLI CCNNNNNNNGG 2 cut(s) 631, 717
BseMII CTCAG 2 cut(s) 455, 738
BseNI ACTGG 2 cut(s) 322, 700
BseRI GAGGAG 1 cut(s) 611
BseSI GKGCMC 1 cut(s) 700
BseXI GCAGC 7 cut(s) 61, 175, 178, 389, 429, 430, 924
BseYI CCCAGC 1 cut(s) 524
BsgI GTGCAG 2 cut(s) 390, 396
Bsh1236I CGCG 3 cut(s) 65, 437, 458
BshFI GGCC 7 cut(s) 14, 424, 492, 511, 698, 721, 834
BsiSI CCGG 5 cut(s) 111, 397, 415, 493, 711
BslI CCNNNNNNNGG 2 cut(s) 631, 717
BsnI GGCC 7 cut(s) 14, 424, 492, 511, 698, 721, 834
Bsp120I GGGCCC 1 cut(s) 696
Bsp1286I GDGCHC 2 cut(s) 407, 700
Bsp143I GATC 8 cut(s) 124, 175, 196, 204, 248, 322, 453, 846
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 8 cut(s) 18, 65, 194, 343, 421, 437, 458, 776
BspANI GGCC 7 cut(s) 14, 424, 492, 511, 698, 721, 834
BspCNI CTCAG 2 cut(s) 456, 739
BspFNI CGCG 3 cut(s) 65, 437, 458
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 2 cut(s) 497, 698
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 7 cut(s) 132, 183, 204, 212, 243, 330, 461
BsrBI CCGCTC 2 cut(s) 343, 778
BsrFI RCCGGY 3 cut(s) 396, 414, 710
BsrI ACTGG 2 cut(s) 322, 700
BssAI RCCGGY 3 cut(s) 396, 414, 710
BssECI CCNNGG 5 cut(s) 252, 425, 446, 625, 756
BssMI GATC 8 cut(s) 124, 175, 196, 204, 248, 322, 453, 846
BssT1I CCWWGG 3 cut(s) 252, 425, 446
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 5 cut(s) 183, 212, 279, 368, 889
BstC8I GCNNGC 3 cut(s) 16, 416, 776
BstDEI CTNAG 4 cut(s) 98, 128, 464, 747
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 57, 269, 807
BstFNI CGCG 3 cut(s) 65, 437, 458
BstH2I RGCGCY 2 cut(s) 312, 464
BstHHI GCGC 4 cut(s) 65, 311, 437, 463
BstKTI GATC 8 cut(s) 127, 178, 199, 207, 251, 325, 456, 849
BstMBI GATC 8 cut(s) 124, 175, 196, 204, 248, 322, 453, 846
BstMWI GCNNNNNNNGC 4 cut(s) 71, 377, 402, 411
BstNI CCWGG 1 cut(s) 757
BstPAI GACNNNNGTC 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 492, 755
BstSLI GKGCMC 1 cut(s) 700
BstUI CGCG 3 cut(s) 65, 437, 458
BstV1I GCAGC 7 cut(s) 61, 175, 178, 389, 429, 430, 924
BstX2I RGATCY 4 cut(s) 124, 175, 248, 322
BstYI RGATCY 4 cut(s) 124, 175, 248, 322
BsuRI GGCC 7 cut(s) 14, 424, 492, 511, 698, 721, 834
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 3 cut(s) 57, 269, 807
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 16, 416, 776
CaiI CAGNNNCTG 1 cut(s) 937
CciI TCATGA 1 cut(s) 645
CfoI GCGC 4 cut(s) 65, 311, 437, 463
Cfr10I RCCGGY 3 cut(s) 396, 414, 710
Cfr13I GGNCC 8 cut(s) 12, 113, 291, 490, 496, 509, 696, 697
Csp6I GTAC 1 cut(s) 315
CviAII CATG 4 cut(s) 22, 253, 646, 920
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 4 cut(s) 98, 128, 464, 747
DpnI GATC 8 cut(s) 126, 177, 198, 206, 250, 324, 455, 848
DpnII GATC 8 cut(s) 124, 175, 196, 204, 248, 322, 453, 846
EaeI YGGCCR 1 cut(s) 719
Eco130I CCWWGG 3 cut(s) 252, 425, 446
Eco24I GRGCYC 2 cut(s) 407, 700
Eco47I GGWCC 3 cut(s) 113, 291, 496
Eco47III AGCGCT 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 534
EcoO109I RGGNCCY 2 cut(s) 496, 696
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 755
EcoT14I CCWWGG 3 cut(s) 252, 425, 446
EcoT22I ATGCAT 1 cut(s) 921
EcoT38I GRGCYC 2 cut(s) 407, 700
ErhI CCWWGG 3 cut(s) 252, 425, 446
FaeI CATG 4 cut(s) 25, 256, 649, 923
FaiI YATR 7 cut(s) 23, 87, 254, 599, 647, 917, 921
FatI CATG 4 cut(s) 21, 252, 645, 919
FauI CCCGC 1 cut(s) 783
FblI GTMKAC 1 cut(s) 274
FokI GGATG 3 cut(s) 64, 276, 794
FriOI GRGCYC 2 cut(s) 407, 700
FspBI CTAG 2 cut(s) 42, 946
GlaI GCGC 4 cut(s) 64, 310, 436, 462
GsaI CCCAGC 1 cut(s) 528
HaeII RGCGCY 2 cut(s) 312, 464
HaeIII GGCC 7 cut(s) 14, 424, 492, 511, 698, 721, 834
HapII CCGG 5 cut(s) 111, 397, 415, 493, 711
HhaI GCGC 4 cut(s) 65, 311, 437, 463
Hin1II CATG 4 cut(s) 25, 256, 649, 923
Hin6I GCGC 4 cut(s) 63, 309, 435, 461
HinP1I GCGC 4 cut(s) 63, 309, 435, 461
HinfI GANTC 1 cut(s) 107
HpaII CCGG 5 cut(s) 111, 397, 415, 493, 711
HphI GGTGA 2 cut(s) 395, 935
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 4 cut(s) 135, 162, 295, 626
Hpy188III TCNNGA 2 cut(s) 81, 646
Hpy8I GTNNAC 1 cut(s) 275
Hpy99I CGWCG 2 cut(s) 212, 368
HpyAV CCTTC 4 cut(s) 53, 157, 625, 876
HpyCH4III ACNGT 5 cut(s) 183, 212, 279, 368, 889
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 7 cut(s) 77, 153, 371, 377, 582, 726, 919
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 377, 402, 411
HpyF3I CTNAG 4 cut(s) 98, 128, 464, 747
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 4 cut(s) 25, 256, 649, 923
HspAI GCGC 4 cut(s) 63, 309, 435, 461
KroI GCCGGC 1 cut(s) 414
KroNI GCCGGC 1 cut(s) 416
Kzo9I GATC 8 cut(s) 124, 175, 196, 204, 248, 322, 453, 846
LmnI GCTCC 3 cut(s) 306, 340, 432
Lsp1109I GCAGC 7 cut(s) 61, 175, 178, 389, 429, 430, 924
LweI GCATC 1 cut(s) 86
MaeI CTAG 2 cut(s) 42, 946
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 383
MalI GATC 8 cut(s) 126, 177, 198, 206, 250, 324, 455, 848
MbiI CCGCTC 2 cut(s) 343, 778
MboI GATC 8 cut(s) 124, 175, 196, 204, 248, 322, 453, 846
MboII GAAGA 1 cut(s) 540
MflI RGATCY 4 cut(s) 124, 175, 248, 322
MhlI GDGCHC 2 cut(s) 407, 700
MluCI AATT 2 cut(s) 649, 858
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 4 cut(s) 102, 113, 140, 318
MnlI CCTC 9 cut(s) 49, 136, 282, 620, 629, 632, 742, 853, 864
Mph1103I ATGCAT 1 cut(s) 921
MroNI GCCGGC 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 2 cut(s) 380, 421
MspI CCGG 5 cut(s) 111, 397, 415, 493, 711
MspR9I CCNGG 2 cut(s) 494, 757
MvaI CCWGG 1 cut(s) 757
MvnI CGCG 3 cut(s) 65, 437, 458
MwoI GCNNNNNNNGC 4 cut(s) 71, 377, 402, 411
NaeI GCCGGC 1 cut(s) 416
NciI CCSGG 1 cut(s) 494
NcoI CCATGG 1 cut(s) 252
NdeII GATC 8 cut(s) 124, 175, 196, 204, 248, 322, 453, 846
NgoMIV GCCGGC 1 cut(s) 414
NlaIII CATG 4 cut(s) 25, 256, 649, 923
NlaIV GGNNCC 2 cut(s) 497, 698
NmuCI GTSAC 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 921
PagI TCATGA 1 cut(s) 645
PaqCI CACCTGC 1 cut(s) 362
PdiI GCCGGC 1 cut(s) 416
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 496
PshAI GACNNNNGTC 1 cut(s) 213
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 755
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 2 cut(s) 497, 698
PspOMI GGGCCC 1 cut(s) 696
PspPI GGNCC 8 cut(s) 12, 113, 291, 490, 496, 509, 696, 697
PspPPI RGGWCCY 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 937
PsuI RGATCY 4 cut(s) 124, 175, 248, 322
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 897
Sau3AI GATC 8 cut(s) 124, 175, 196, 204, 248, 322, 453, 846
Sau96I GGNCC 8 cut(s) 12, 113, 291, 490, 496, 509, 696, 697
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 494, 757
SduI GDGCHC 2 cut(s) 407, 700
SfaNI GCATC 1 cut(s) 86
SinI GGWCC 3 cut(s) 113, 291, 496
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 2 cut(s) 649, 858
SsiI CCGC 8 cut(s) 18, 65, 194, 343, 421, 437, 458, 776
SspMI CTAG 2 cut(s) 42, 946
StyD4I CCNGG 2 cut(s) 492, 755
StyI CCWWGG 3 cut(s) 252, 425, 446
TaaI ACNGT 5 cut(s) 183, 212, 279, 368, 889
TaiI ACGT 1 cut(s) 390
TaqI TCGA 2 cut(s) 207, 845
TasI AATT 2 cut(s) 649, 858
TauI GCSGC 4 cut(s) 21, 346, 424, 461
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 7 cut(s) 74, 188, 191, 377, 418, 442, 937
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 3 cut(s) 662, 870, 881
VpaK11BI GGWCC 3 cut(s) 113, 291, 496
XapI RAATTY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 2 cut(s) 42, 946
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.